View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7044_low_9 (Length: 234)
Name: NF7044_low_9
Description: NF7044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7044_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 49107114 - 49106916
Alignment:
| Q |
19 |
atagaaagggcaatgtttgtagcttagagtaataaatattgtttggattaataaccatggaaattccctcaattgattgtgatgataatgtcaagtaacg |
118 |
Q |
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| T |
49107114 |
atagaaagggcaatgtttgtagcttagagtaataaatattgtttggattaataaccatggaaattccctcaattgattgtgatgataatgtcaagtaacg |
49107015 |
T |
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| Q |
119 |
gagaattttgtagcataaaagtattacaagttatgaagtaaattccctaattgtgaaagtagccttacacttttcaaactcaaaactcatagttagtat |
217 |
Q |
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| T |
49107014 |
gagaattttgtagcataaaagtattacaagttatgaagtaaattccctaattgtgaaagtagccttacacttttcaaactcaaaactcatagttagtat |
49106916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 50112053 - 50112228
Alignment:
| Q |
19 |
atagaaagggcaatgtttgtagcttagagtaataaatattgtttggattaataaccatggaaattccctcaattgattgtgatgataatgtcaagtaacg |
118 |
Q |
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| T |
50112053 |
atagaaagcgcaatgtttatagcttaaagtaataagtattgtttgaattaataacaagggaaattaactcagatgattgtgatgataatgtcaagtaaaa |
50112152 |
T |
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| Q |
119 |
gagaattttgtagcataaaagtattacaagttatgaagtaaattccctaattgtgaaagtagccttacacttttca |
194 |
Q |
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| T |
50112153 |
gagaattttgtagcataaaagaatcacaagttatgaagtgaattcccaaattgtgaacgtagccttaaactcttca |
50112228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 92 - 217
Target Start/End: Complemental strand, 50078011 - 50077886
Alignment:
| Q |
92 |
tgattgtgatgataatgtcaagtaacggagaattttgtagcataaaagtattacaagttatgaagtaaattccctaattgtgaaagtagccttacacttt |
191 |
Q |
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| T |
50078011 |
tgattgtgatgataatgtcaagtaatagagaattttgtagcataaaagaatcacaagttctgaagtgaattccctgattatgaacgtagccttaaacttt |
50077912 |
T |
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| Q |
192 |
tcaaactcaaaactcatagttagtat |
217 |
Q |
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| T |
50077911 |
tcaaactcaaaactcatagttagtat |
50077886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 92 - 217
Target Start/End: Complemental strand, 10796421 - 10796296
Alignment:
| Q |
92 |
tgattgtgatgataatgtcaagtaacggagaattttgtagcataaaagtattacaagttatgaagtaaattccctaattgtgaaagtagccttacacttt |
191 |
Q |
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| T |
10796421 |
tgattgtgatgataatgtcaagtaatagagaattttgtagcataaaagaatcacaagttctgaagtgaattccctgattatgaacgtagccttaaacttt |
10796322 |
T |
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| Q |
192 |
tcaaactcaaaactcatagttagtat |
217 |
Q |
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|||||||||||||||||||||||||| |
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| T |
10796321 |
tcaaactcaaaactcatagttagtat |
10796296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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