View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7045_high_10 (Length: 241)

Name: NF7045_high_10
Description: NF7045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7045_high_10
NF7045_high_10
[»] chr8 (1 HSPs)
chr8 (2-223)||(44376998-44377220)
[»] chr6 (2 HSPs)
chr6 (1-220)||(8113728-8113948)
chr6 (66-220)||(8302555-8302710)
[»] chr3 (1 HSPs)
chr3 (1-223)||(41419115-41419337)
[»] chr7 (1 HSPs)
chr7 (8-210)||(33260904-33261106)


Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 44376998 - 44377220
Alignment:
Q  2 ttcaaagtcattgttatggagtaaattcaattgatcaaccattggtgaattgagaagagcaatataatttggacggatcttaatttgatccttctttaat 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44376998 ttcaaagtcattgttatggagtaaattcaattgatcaaccattggtgaattgagaagagcaatataatttggacggatcttaatttgatccttctttaat 44377097  T
Q  102 aattatacattcgtattattgttataatgttaaaggaaaaaattcggttatctg-aaaaatggatattccattaataatagtttcaagcttgcaataaat 200  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  44377098 aattatacattcgtattattgttattatgttaaaggaaaaaattcggttatctgaaaaaatggatattccattaataatagtttcaagcttgcaataaat 44377197  T
Q  201 ggatgacaaacaaaagaaaagat 223  Q
    ||||| |||||||||||||||||    
T  44377198 ggatggcaaacaaaagaaaagat 44377220  T

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Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 8113728 - 8113948
Alignment:
Q  1 tttcaaagtcattgttatggagtaaattcaattgatcaaccattggtgaattgagaagagcaatataatttggacggatcttaatttgatccttctttaa 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8113728 tttcaaagtcattgttatggagtaaattcatttgatcaaccattggtgaattgagaagagcaatataatttggacggatcttaatttgatccttctttaa 8113827  T
Q  101 taattatacattcgtattattgttataatgttaaaggaaaaaattcggttatctg-aaaaatggatattccattaataatagtttcaagcttgcaataaa 199  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  8113828 taattatacattcgtattattgttattatgttaaaggaaaaaattcggttatctgaaaaaatggatattccattaataatagtttcaagcttacaataaa 8113927  T
Q  200 tggatgacaaacaaaagaaaa 220  Q
    |||||||||||||||||||||    
T  8113928 tggatgacaaacaaaagaaaa 8113948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 66 - 220
Target Start/End: Complemental strand, 8302710 - 8302555
Alignment:
Q  66 taatttggacggatcttaatttgatccttctttaataattatacattcgtattattgttataatgttaaaggaaaaaattcggttatctg---------a 156  Q
    |||||||||||||||||||||||| ||| |||| |||||||||||||| |||||||        ||||||||||||||||| | ||| ||         |    
T  8302710 taatttggacggatcttaatttgaccctcctttgataattatacattcatattatt--------gttaaaggaaaaaattcagctatgtgaagaagaaaa 8302619  T
Q  157 aaaatggatattccattaataatagtttcaagcttgcaataaatggatgacaaacaaaagaaaa 220  Q
    ||||  ||||||| |||||||||||||||||||||||| ||||||| |||||||||||| ||||    
T  8302618 aaaaaagatattcgattaataatagtttcaagcttgcactaaatggttgacaaacaaaaaaaaa 8302555  T

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Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 41419115 - 41419337
Alignment:
Q  1 tttcaaagtcattgttatggagtaaattcaattgatcaaccattggtgaattgagaagagcaatataatttggacggatcttaatttgatccttctttaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41419115 tttcaaagtcattgttatggagtaaattcaattgatcaaccattggtgaattgagaagagcaatataatttggacggattttaatttgatccttctttaa 41419214  T
Q  101 taattatacattcgtattattgttataatgttaaaggaaaaaattcggttatctgaaaaatggatattccattaataatagtttcaagcttgcaataaat 200  Q
    ||||||||||||||||||||||||||  |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41419215 taattatacattcgtattattgttattgtgttaaagaaaaaaattcgattatctgaaaaatggatattccattaataatagtttcaagcttgcaataaat 41419314  T
Q  201 ggatgacaaacaaaagaaaagat 223  Q
    ||||||||||||||| |||||||    
T  41419315 ggatgacaaacaaaaaaaaagat 41419337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 33261106 - 33260904
Alignment:
Q  8 gtcattgttatggagtaaattcaattgatcaaccattggtgaattgagaagagcaatataatttggacggatcttaatttgatccttctttaataattat 107  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  33261106 gtcattgttatggagtaaattcaattgatcaaccataggtgaattgagaagagcaatataatttggacggatcttaatttgatcctcctttgataattat 33261007  T
Q  108 acattcgtattattgttataatgttaaaggaaaaaattcggttatctgaaaaatggatattccattaataatagtttcaagcttgcaataaatggatgac 207  Q
    |||||| |||||||||||| ||||||||||||||||||  ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33261006 acattcatattattgttattatgttaaaggaaaaaattaagttatctaaaaaatggatattcgattaataatagtttcaagcttgcaataaatggatgac 33260907  T
Q  208 aaa 210  Q
    |||    
T  33260906 aaa 33260904  T

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