View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7045_high_5 (Length: 332)
Name: NF7045_high_5
Description: NF7045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7045_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 82 - 314
Target Start/End: Complemental strand, 30266596 - 30266367
Alignment:
| Q |
82 |
tgtattattaatacaaaaaagaggtaactgttttgagagaaaaggtatagaaactgtgtgcatgtgaaggtggatgaacgtgaacgtggttactcactca |
181 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30266596 |
tgtattattaatacaaaaaagaggtaactgttttgagagaaaaggtatagaaactgtgtgcatgtgaaggtggatgaacgtgaacgtgg----tcactca |
30266501 |
T |
|
| Q |
182 |
ctcactatgcaactttttcacgcggtttagtaaaatttgaacaatggtggtgatatatggtagg-aaaaaga-tttgtttttcaaataccaaaaatccgg |
279 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||| |
|
|
| T |
30266500 |
ctcaccatgcaactttttcacgcggtttagtaaaatttgaacaatggtggtgatatatggtaggaaaaaagattttgtttttcaaat-ccaaaaatccgg |
30266402 |
T |
|
| Q |
280 |
tgtaagtgatatgattaagggtagaagaacaagat |
314 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| |
|
|
| T |
30266401 |
tgtgagtgatatgattaagggtagaagaacaagat |
30266367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University