View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7045_low_1 (Length: 899)
Name: NF7045_low_1
Description: NF7045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7045_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 624; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 624; E-Value: 0
Query Start/End: Original strand, 25 - 884
Target Start/End: Complemental strand, 19810138 - 19809275
Alignment:
| Q |
25 |
aggtcaagggctgtaggaacagcaaccacatttccaacttgcatgtacctctgtttgatagtgctgcaaagtttataacaatctggaaatccttgcagcc |
124 |
Q |
| |
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||||||||||| | ||||||| |||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
19810138 |
aggtcaagggccattggaacagtaaccgcatttccaacttacatgtacctctgtttgatagggctgcaaagtttataacaatctggaaatccttgtagcc |
19810039 |
T |
|
| Q |
125 |
ttacattctctcgaacgctatgaactctgtcttcttttgggttgagaagagaccgattatgagattatgcccttgttgccacaacgtggacacaatttca |
224 |
Q |
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||||||||||||| | ||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
19810038 |
ttacattctctcggaggctatgaactctgccttcttttgggtcgagaagagaccagttatgagattatgcccttgttgccacagcgtggacacaacttca |
19809939 |
T |
|
| Q |
225 |
tcccaccaaagtcgaccaaatggcttaaaggaggttccgcgaacaaatgtcatgacacataatctggaaccaaaggcttcccagattttagcaccttcaa |
324 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19809938 |
tcccaccaaagtcgaccaaatagcttaaaggaggttccgcgaacaaatgtcatggcacataatctggaaccaaaggcttcccagattttagcaccttcaa |
19809839 |
T |
|
| Q |
325 |
ctccaccgaggctttgagttaggataaggatcctttgttttgtttcatgattagagtattcatcctgtaaactctaaatcattcctatatattatttgaa |
424 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19809838 |
ctccaccgaggctttgagttaggataaggatcctttgttttgtttcatgattagagtattcatcctgtaaactctaaatcattcctatatattatttgaa |
19809739 |
T |
|
| Q |
425 |
atcttgaaccattaaattgaatgctattggttgattttcgttcatagttgcattttcaacttaaatcaatcgggcttaattcataatcatttccgttttg |
524 |
Q |
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|||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
19809738 |
atcttgaaccatta----gaatgctattggttgattttcattcatggttgcattttcaacttaattcaatcgggcttaattcataatca-ttccgttttg |
19809644 |
T |
|
| Q |
525 |
taatcgaattagattaggcctcaactcataataattatcatttcttttannnnnnngtgttcccgcagtcatatacgaaacacagtcgagccctaaccct |
624 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
19809643 |
taatcgaattagattaggcctcaactcataataattatcatttctttta--tttttgtgttcccgtagtcatatacgaaacacagtcgagccctaaccct |
19809546 |
T |
|
| Q |
625 |
gaatctcctttctatttcttaccttttatgagttttcttcataatttcatccttcaaattcttctcatttttgctgctgaaatagattgaaacaaaacac |
724 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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|
| T |
19809545 |
gaatctcctatctatttcttaccttttatgagttttcttcataatttcatccttcaaattcttctcatttctgctgctgaaaaagattgaaacaaaacac |
19809446 |
T |
|
| Q |
725 |
tgcttttgctttgacttcaattgaaaccaaaaaattgaaaccaatttattcac------aagcaactttatgtttcttcacacttcaaagta-tgcatag |
817 |
Q |
| |
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|| |||||||| |||||||||| ||||| ||||||| | |||||||||||||| |||||| ||||||||||||||||||||||| || |||| || |
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| T |
19809445 |
tgattttgcttggacttcaattcaaacccaaaaatttataccaatttattcacaagttgaagcaattttatgtttcttcacacttcaaattattgcacag |
19809346 |
T |
|
| Q |
818 |
ggtgcaattttacaac----atctcacaacttgaaattacaacaaacttgcaattccacactcctaatgcc |
884 |
Q |
| |
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|||||||||||||||| || | |||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
19809345 |
ggtgcaattttacaacatatatataacaacttgaaattacaacgaacttgcaattccacactcctaatgcc |
19809275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 70 - 174
Target Start/End: Original strand, 9389878 - 9389982
Alignment:
| Q |
70 |
tacctctgtttgatagtgctgcaaagtttataacaatctggaaatccttgcagccttacattctctcgaacgctatgaactctgtcttcttttgggttga |
169 |
Q |
| |
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||||||||||||| || || ||||| ||||| || |||||||||||||| |||||| |||||||||||| ||| |||||||||||| || ||| | || |
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| T |
9389878 |
tacctctgtttgacagggccacaaagcttatagcagtctggaaatccttgtagccttgcattctctcgaatactaagaactctgtcttgttctggatgga |
9389977 |
T |
|
| Q |
170 |
gaaga |
174 |
Q |
| |
|
||||| |
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|
| T |
9389978 |
gaaga |
9389982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 248
Target Start/End: Original strand, 9390264 - 9390299
Alignment:
| Q |
213 |
gacacaatttcatcccaccaaagtcgaccaaatggc |
248 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |
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|
| T |
9390264 |
gacacaatttcgtcccaccaaagtcgaccaaatggc |
9390299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 157
Target Start/End: Original strand, 1337692 - 1337779
Alignment:
| Q |
70 |
tacctctgtttgatagtgctgcaaagtttataacaatctggaaatccttgcagccttacattctctcgaacgctatgaactctgtctt |
157 |
Q |
| |
|
||||||||||||| || || ||||| ||||| || |||||||||||||| |||||| |||||||||||| |||| |||||||||||| |
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| T |
1337692 |
tacctctgtttgacagggccacaaagcttatagcagtctggaaatccttgtagccttgcattctctcgaatgctaagaactctgtctt |
1337779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 209 - 248
Target Start/End: Original strand, 1338094 - 1338133
Alignment:
| Q |
209 |
cgtggacacaatttcatcccaccaaagtcgaccaaatggc |
248 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||| |
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| T |
1338094 |
cgtggacacaatttcgtcccaccaaagtcgaccaaatggc |
1338133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 174
Target Start/End: Original strand, 31939505 - 31939609
Alignment:
| Q |
70 |
tacctctgtttgatagtgctgcaaagtttataacaatctggaaatccttgcagccttacattctctcgaacgctatgaactctgtcttcttttgggttga |
169 |
Q |
| |
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||||||||||||| || || ||||| ||||| || |||||||||||||| |||||| |||||||||| | ||| |||||||||||| || ||| | || |
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|
| T |
31939505 |
tacctctgtttgacagggccacaaagcttatagcagtctggaaatccttgtagccttgcattctctcgtatactaagaactctgtcttgttctggatgga |
31939604 |
T |
|
| Q |
170 |
gaaga |
174 |
Q |
| |
|
||||| |
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|
| T |
31939605 |
gaaga |
31939609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 248
Target Start/End: Original strand, 31939911 - 31939946
Alignment:
| Q |
213 |
gacacaatttcatcccaccaaagtcgaccaaatggc |
248 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |
|
|
| T |
31939911 |
gacacaatttcgtcccaccaaagtcgaccaaatggc |
31939946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 210 - 248
Target Start/End: Original strand, 5639983 - 5640021
Alignment:
| Q |
210 |
gtggacacaatttcatcccaccaaagtcgaccaaatggc |
248 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||| |
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|
| T |
5639983 |
gtggacacaatttcgtcccaccaaagtcgaccaaatggc |
5640021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 5639592 - 5639658
Alignment:
| Q |
91 |
caaagtttataacaatctggaaatccttgcagccttacattctctcgaacgctatgaactctgtctt |
157 |
Q |
| |
|
||||||||||| ||||| |||||||| || |||||| |||||||||||| | || | |||||||||| |
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|
| T |
5639592 |
caaagtttatagcaatcaggaaatccctgaagccttgcattctctcgaatggtaagtactctgtctt |
5639658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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