View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7045_low_11 (Length: 317)
Name: NF7045_low_11
Description: NF7045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7045_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 394163 - 394472
Alignment:
| Q |
1 |
attgtggcacttgtatatgtgccgcatctcctttagactggagctacatcagtaagtactgtgcctttgttgaggaagccagggtttatggaaaatcaaa |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
394163 |
attgtggcacttgtatatgtgccacatctcctttagactggagctacatcagtaagtactgtgcctttgttgaggaagccaggttttatggaaaatcaaa |
394262 |
T |
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| Q |
101 |
aggcagatgtatttgtgaggcgagttctaaggtggaagctgttagtaggcccaaataattaggcccatatgtatttgttagtgtgctgtgtgtctaaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
394263 |
aggcagatgtatttgtgaggcgagttctaaggtggaagctgttagtaggcccaaataattaggcccatatgtatttgttagtgtgctgtgtgtctaaatg |
394362 |
T |
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| Q |
201 |
gataaaggatggcacatgtaaacaatcaggttatttttattattggttagggaagggagatactaggatctctaactcttagtggttggttgtgtctcac |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
394363 |
gataaaggatggcacatgtaaacaatcaggttatttttattattggttagggaagggagatactaggatctctaattcttagtggttggttgtgtctcac |
394462 |
T |
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| Q |
301 |
aggttctgct |
310 |
Q |
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| ||||||| |
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| T |
394463 |
actttctgct |
394472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 232
Target Start/End: Original strand, 22775905 - 22775987
Alignment:
| Q |
152 |
caaataattaggcccatatgtatttgttagtgtgctgtgtgtcta--aatggataaaggatggcacatgtaaacaatcaggtt |
232 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| || ||| || |||||||||| |||||||| || ||||| |
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| T |
22775905 |
caaataattaggcccatatgtatttgttagtgtgttgtgtgtttatgaatagaataaggatggcatatgtaaaccattaggtt |
22775987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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