View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7045_low_14 (Length: 250)

Name: NF7045_low_14
Description: NF7045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7045_low_14
NF7045_low_14
[»] chr8 (2 HSPs)
chr8 (8-237)||(44376691-44376920)
chr8 (8-216)||(36402249-36402462)
[»] chr6 (5 HSPs)
chr6 (15-237)||(8113428-8113650)
chr6 (13-61)||(709375-709423)
chr6 (13-60)||(2138530-2138577)
chr6 (31-216)||(10966162-10966355)
chr6 (13-60)||(10965283-10965330)
[»] chr3 (6 HSPs)
chr3 (8-237)||(41418808-41419037)
chr3 (29-100)||(43454069-43454141)
chr3 (13-60)||(43453492-43453539)
chr3 (8-50)||(42020844-42020886)
chr3 (168-224)||(43454000-43454054)
chr3 (26-66)||(35982561-35982601)
[»] chr7 (4 HSPs)
chr7 (44-237)||(33261196-33261387)
chr7 (13-216)||(24873804-24874012)
chr7 (25-98)||(27917760-27917834)
chr7 (13-50)||(27918567-27918604)
[»] chr4 (5 HSPs)
chr4 (8-216)||(21280083-21280296)
chr4 (24-216)||(21280400-21280597)
chr4 (29-98)||(45141052-45141122)
chr4 (168-223)||(45140981-45141035)
chr4 (29-60)||(45140523-45140554)
[»] chr1 (3 HSPs)
chr1 (13-216)||(5491122-5491330)
chr1 (8-216)||(13415556-13415771)
chr1 (23-60)||(5490573-5490610)
[»] scaffold0006 (1 HSPs)
scaffold0006 (20-216)||(285238-285441)
[»] chr2 (1 HSPs)
chr2 (8-84)||(7754060-7754137)
[»] chr5 (1 HSPs)
chr5 (187-224)||(38406867-38406904)


Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 44376691 - 44376920
Alignment:
Q  8 cgaagaaaataccaataaattaaatagatggttcagatttattcaaattaaaaagagaacatgtctaacttttcacattcaacattatcctcaaatagat 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| | |    
T  44376691 cgaaaaaaataccaataaattaaatagatggttcagatttattcaaattaaaaggagaacatgtttaacttttcacattcaacattatcctcaaatggct 44376790  T
Q  108 ttcatttatgttatactataattcttctatcaaaatgagatgttatctttacttccaatgatcatgcactcaaaccataaaaatatgagatcaaattatg 207  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44376791 ttcatttatgttatactataattcttctatcaaaatgagatactatctttacttccaatgatcatgcactcaaaccataaaaatatgagatcaaattatg 44376890  T
Q  208 aaccctaaactaaaaaatttgatgtttaat 237  Q
    || |||||||||||||||||||||||||||    
T  44376891 aatcctaaactaaaaaatttgatgtttaat 44376920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 216
Target Start/End: Original strand, 36402249 - 36402462
Alignment:
Q  8 cgaagaaaataccaataaattaaatagatggttcagatttattcaaattaaaaag-agaacatgtctaacttttcacattcaacattatcctcaaataga 106  Q
    |||| |||| ||||||| |||||||| |||||| | ||| ||||||||||| | | |||||||||| |||||||||||||||| |||||||||| || |     
T  36402249 cgaaaaaaacaccaatagattaaataaatggtttaaattcattcaaattaagagggagaacatgtcaaacttttcacattcaatattatcctcagatggt 36402348  T
Q  107 tttcatttatgtt-----atactataattcttctatcaaaatgagatgttatctttacttccaatgatcatgcactcaaaccataaaaatatgagatcaa 201  Q
    ||||| |||||||      | |||  |||||||  ||||||| |||   | ||||||||||||||||| ||||||||||||||| ||||| ||| |||||    
T  36402349 tttcacttatgtttacaattcctactattcttccttcaaaataagacactctctttacttccaatgattatgcactcaaaccat-aaaatctgatatcaa 36402447  T
Q  202 attatgaaccctaaa 216  Q
    |||||||| ||||||    
T  36402448 attatgaatcctaaa 36402462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 8113428 - 8113650
Alignment:
Q  15 aataccaataaattaaatagatggttcagatttattcaaattaaaaagagaacatgtctaacttttcacattcaacattatcctcaaatagatttcattt 114  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||| | ||||||||    
T  8113428 aataccaataaattaaatagatggttcaaatttattcaaattaaaaggagaacatgtcttacttttcacattcaacattatcatcaaatggctttcattt 8113527  T
Q  115 atgttatactataattcttctatcaaaatgagatgttatctttacttccaatgatcatgcactcaaaccataaaaatatgagatcaaattatgaacccta 214  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8113528 atgttatactataattcttctatcaaaatgagatgctatctttacttccaatgatcatgcactcaaaccataaaaatatgagatcaaattatgaacccta 8113627  T
Q  215 aactaaaaaatttgatgtttaat 237  Q
    |||||||||||||||||||||||    
T  8113628 aactaaaaaatttgatgtttaat 8113650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 709375 - 709423
Alignment:
Q  13 aaaataccaataaattaaatagatggttcagatttattcaaattaaaaa 61  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  709375 aaaataccaatagattaaatagatggttcagatttattcaaattaaaaa 709423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 2138530 - 2138577
Alignment:
Q  13 aaaataccaataaattaaatagatggttcagatttattcaaattaaaa 60  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||    
T  2138530 aaaataccaataaattaaatagatggttgagatttattcaaattaaaa 2138577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 216
Target Start/End: Complemental strand, 10966355 - 10966162
Alignment:
Q  31 atagatggttcagatttattcaaattaaaaag-agaacatgtctaacttttcacattcaacattatcctcaaatagatttcatttatgtt--------at 121  Q
    |||||||||||| ||||||| ||||||||| | |||| ||||  |||||||||||||||| ||||||||||| | | ||||| |||| ||         |    
T  10966355 atagatggttcaaatttatttaaattaaaagggagaatatgtgcaacttttcacattcaatattatcctcaactggttttcaattatctttacaattcct 10966256  T
Q  122 actataattcttctatcaaaatgagatgttatctttacttccaatgatcatgcactcaaaccataaaaatatgagatcaaattatgaaccctaaa 216  Q
    ||| ||||||||   ||||||||||||  | ||||| | ||| || ||||| |||||||||||| ||||| ||| ||||||||||||||||||||    
T  10966255 actctaattctttgttcaaaatgagatactctcttttcctccgattatcatacactcaaaccat-aaaatttgaaatcaaattatgaaccctaaa 10966162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 10965283 - 10965330
Alignment:
Q  13 aaaataccaataaattaaatagatggttcagatttattcaaattaaaa 60  Q
    ||||||||| || ||||||||||||||||| ||||||| |||||||||    
T  10965283 aaaataccattagattaaatagatggttcaaatttatttaaattaaaa 10965330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 41418808 - 41419037
Alignment:
Q  8 cgaagaaaataccaataaattaaatagatggttcagatttattcaaattaaaaagagaacatgtctaacttttcacattcaacattatcctcaaatagat 107  Q
    |||| ||||||||| || |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||   |    
T  41418808 cgaaaaaaataccattagattaaataaatggttcagatttattcaaattaaaaggagaacatgtctaacttttcacattcaacgttatcctcaaatgact 41418907  T
Q  108 ttcatttatgttatactataattcttctatcaaaatgagatgttatctttacttccaatgatcatgcactcaaaccataaaaatatgagatcaaattatg 207  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41418908 ttcatttatgttatactataattcttctatcaaaatgagatgctatctttacttccaatgatcatgcactcaaaccataaaaatatgagatcaaattatg 41419007  T
Q  208 aaccctaaactaaaaaatttgatgtttaat 237  Q
    |||||| ||| |||||||||||||||||||    
T  41419008 aaccctgaacaaaaaaatttgatgtttaat 41419037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 43454141 - 43454069
Alignment:
Q  29 aaatagatggttcagatttattcaaatt-aaaaagagaacatgtctaacttttcacattcaacattatcctca 100  Q
    |||||||||||||||||||||||||||| ||| |||||| ||||  |||||||||||||||| ||||||||||    
T  43454141 aaatagatggttcagatttattcaaattcaaagagagaatatgtgcaacttttcacattcaatattatcctca 43454069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 43453492 - 43453539
Alignment:
Q  13 aaaataccaataaattaaatagatggttcagatttattcaaattaaaa 60  Q
    |||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  43453492 aaaataccaatagattaaatagatggttcaaatttatttaaattaaaa 43453539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 42020886 - 42020844
Alignment:
Q  8 cgaagaaaataccaataaattaaatagatggttcagatttatt 50  Q
    |||| |||||||||||| |||||||||||||||||||||||||    
T  42020886 cgaaaaaaataccaatagattaaatagatggttcagatttatt 42020844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 43454054 - 43454000
Alignment:
Q  168 atcatgcactcaaaccataaaaatatgagatcaaattatgaaccctaaactaaaaaa 224  Q
    |||||||||||||| ||||||  | |||||||||||||||||||||||| |||||||    
T  43454054 atcatgcactcaaatcataaa--tctgagatcaaattatgaaccctaaattaaaaaa 43454000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 35982561 - 35982601
Alignment:
Q  26 attaaatagatggttcagatttattcaaattaaaaagagaa 66  Q
    |||||||| ||||||||||||||||| ||||||||| ||||    
T  35982561 attaaatacatggttcagatttattcgaattaaaaatagaa 35982601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 44 - 237
Target Start/End: Complemental strand, 33261387 - 33261196
Alignment:
Q  44 atttattcaaattaaaaag-agaacatgtctaacttttcacattcaacattatcctcaaatagatttcatttatgttatactataattcttctatcaaaa 142  Q
    ||||||| ||||||||| | ||||||||||||||||||||||||||| ||||||||||||| | ||||| ||    |||||| ||||| |||||||||||    
T  33261387 atttatttaaattaaaatggagaacatgtctaacttttcacattcaatattatcctcaaatggctttcactt----tatactctaattattctatcaaaa 33261292  T
Q  143 tgagatgttatctttacttc--caatgatcatgcactcaaaccataaaaatatgagatcaaattatgaaccctaaactaaaaaatttgatgtttaat 237  Q
    ||||||  | ||||||| ||  |||| ||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  33261291 tgagatactctctttacctctccaattatcatgcactctaaccataaaa-taggagatcaaattatgaaccctaaactaaaaaatttgatgtttaat 33261196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 216
Target Start/End: Original strand, 24873804 - 24874012
Alignment:
Q  13 aaaataccaataaattaaatagatggttcagatttattcaaattaaaaag-agaacatgtctaacttttcacattcaacattatcctcaaatagatttca 111  Q
    |||| ||||||| ||||||||  ||||| ||||||||||||||||||| | |||||||||| |||||||||||||||| |||||||||| || | ||| |    
T  24873804 aaaacaccaatagattaaataagtggtttagatttattcaaattaaaagggagaacatgtcaaacttttcacattcaatattatcctcatatggttttga 24873903  T
Q  112 tttatgtt-----atactataattcttctatcaaaatgagatgttatctttacttccaatgatcatgcactcaaaccataaaaatatgagatcaaattat 206  Q
     |||||||      | |||  |||||||  ||||||| ||||  | ||||||||||||||||| ||| ||||||||||| ||||| ||| ||||||||||    
T  24873904 gttatgtttacaattcctactattcttccttcaaaataagatactctctttacttccaatgattatggactcaaaccat-aaaatctgatatcaaattat 24874002  T
Q  207 gaaccctaaa 216  Q
    ||||||||||    
T  24874003 gaaccctaaa 24874012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 27917760 - 27917834
Alignment:
Q  25 aattaaatagatggttcagatttattcaaattaaaaaga-gaacatgtctaacttttcacattcaacattatcct 98  Q
    ||||||||| ||| ||||||||||||||||||||||| | |||||| |  |||| |||||||||||  |||||||    
T  27917760 aattaaatacatgcttcagatttattcaaattaaaaataggaacatatacaactattcacattcaatcttatcct 27917834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 27918604 - 27918567
Alignment:
Q  13 aaaataccaataaattaaatagatggttcagatttatt 50  Q
    |||||||||||| ||||||||||||||||| |||||||    
T  27918604 aaaataccaatagattaaatagatggttcatatttatt 27918567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 216
Target Start/End: Original strand, 21280083 - 21280296
Alignment:
Q  8 cgaagaaaataccaataaattaaatagatggttcagatttattcaaattaaaaag-agaacatgtctaacttttcacattcaacattatcctcaaataga 106  Q
    |||| |||| ||||||| |||||||| |||||| ||||| ||||||||||||| | |||||||||| |||||||||||||||| |||||||| | || |     
T  21280083 cgaaaaaaacaccaatagattaaataaatggtttagattcattcaaattaaaagggagaacatgtcaaacttttcacattcaatattatcctgagatggt 21280182  T
Q  107 tttcatttatgtt-----atactataattcttctatcaaaatgagatgttatctttacttccaatgatcatgcactcaaaccataaaaatatgagatcaa 201  Q
    ||||| |||||||      | |||  |||||||  ||||||||||||  | ||||||||||||||||| ||||||||||||||| ||||| ||| |||||    
T  21280183 tttcacttatgtttacaattcctactattcttccttcaaaatgagatactctctttacttccaatgattatgcactcaaaccat-aaaatctgatatcaa 21280281  T
Q  202 attatgaaccctaaa 216  Q
    |||||||||||||||    
T  21280282 attatgaaccctaaa 21280296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 24 - 216
Target Start/End: Original strand, 21280400 - 21280597
Alignment:
Q  24 aaattaaatagatggttcagatttattcaaattaaaaag-agaacatgtctaacttttcacattcaacattatcctcaaatagatttcatttatgtt--- 119  Q
    |||||||||| |||||| ||||| | ||||||||||| | |||||||||| |||||||||||||||| |||||||||| || | ||||| |||||||       
T  21280400 aaattaaataaatggtttagattcagtcaaattaaaagggagaacatgtcaaacttttcacattcaatattatcctcagatggttttcacttatgtttac 21280499  T
Q  120 --atactataattcttctatcaaaatgagatgttatctttacttccaatgatcatgcactcaaaccataaaaatatgagatcaaattatgaaccctaaa 216  Q
       | |||  |||||||  ||||||| ||||  | ||||||||||||||||| ||||||||||||||| ||||| ||| ||||||||||||||||||||    
T  21280500 aattcctactattcttccttcaaaataagatactctctttacttccaatgattatgcactcaaaccat-aaaatctgatatcaaattatgaaccctaaa 21280597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 45141122 - 45141052
Alignment:
Q  29 aaatagatggttcagatttattcaaattaaaa-agagaacatgtctaacttttcacattcaacattatcct 98  Q
    |||||||||||||||||||||||| ||||||| ||| |||||||  |||||||||||||||| ||||||||    
T  45141122 aaatagatggttcagatttattcagattaaaagagataacatgtgcaacttttcacattcaatattatcct 45141052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 45141035 - 45140981
Alignment:
Q  168 atcatgcactcaaaccataaaaatatgagatcaaattatgaaccctaaactaaaaa 223  Q
    |||||||||||||||||||||| | ||| |||||||||||||||||||| ||||||    
T  45141035 atcatgcactcaaaccataaaa-tctgatatcaaattatgaaccctaaattaaaaa 45140981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 60
Target Start/End: Original strand, 45140523 - 45140554
Alignment:
Q  29 aaatagatggttcagatttattcaaattaaaa 60  Q
    ||||||||||||||||||||||||||||||||    
T  45140523 aaatagatggttcagatttattcaaattaaaa 45140554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 13 - 216
Target Start/End: Complemental strand, 5491330 - 5491122
Alignment:
Q  13 aaaataccaataaattaaatagatggttcagatttattcaaattaaaaag-agaacatgtctaacttttcacattcaacattatcctcaaatagatttca 111  Q
    |||| |||||||||||||||| |||||| ||||| | ||||||||||| | |||||||||| |||||||||||||||| |||||||||| || | |||||    
T  5491330 aaaacaccaataaattaaataaatggtttagattcagtcaaattaaaagggagaacatgtcaaacttttcacattcaatattatcctcagatggttttca 5491231  T
Q  112 tttatgtt-----atactataattcttctatcaaaatgagatgttatctttacttccaatgatcatgcactcaaaccataaaaatatgagatcaaattat 206  Q
     |||||||      | |||  |||||||  ||||||| ||||  | ||||||||||||||||| ||||||||||||||| ||||| ||| ||||||||||    
T  5491230 cttatgtttacaattcctactattcttccttcaaaataagatactctctttacttccaatgattatgcactcaaaccat-aaaatctgatatcaaattat 5491132  T
Q  207 gaaccctaaa 216  Q
    ||||||||||    
T  5491131 gaaccctaaa 5491122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 8 - 216
Target Start/End: Original strand, 13415556 - 13415771
Alignment:
Q  8 cgaagaaaataccaataaattaaatagatggttcagatttattcaaattaaaaag-agaacatgtctaacttttcacattcaacattatcctcaaataga 106  Q
    |||| |||| ||||||| |||||||| |||||| ||||| ||||||||||||| | |||||||||| |||||||||||||||  || |||||| |||       
T  13415556 cgaaaaaaacaccaatagattaaataaatggtttagattcattcaaattaaaagggagaacatgtcaaacttttcacattcagtatcatcctcgaatgat 13415655  T
Q  107 tttcatttatgtta--------tactataattcttctatcaaaatgagatgttatctttacttccaatgatcatgcactcaaaccataaaaatatgagat 198  Q
    ||||| |||||||         |||| | |||||||  ||||||||||||  | ||||||||||||||||| |||||||||||||||  |||| ||| ||    
T  13415656 tttcacttatgtttacaattcctactctgattcttccttcaaaatgagatactctctttacttccaatgattatgcactcaaaccat--aaatctgatat 13415753  T
Q  199 caaattatgaaccctaaa 216  Q
    ||||||||||||||||||    
T  13415754 caaattatgaaccctaaa 13415771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 5490573 - 5490610
Alignment:
Q  23 taaattaaatagatggttcagatttattcaaattaaaa 60  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  5490573 taaataaaatagatggttaagatttattcaaattaaaa 5490610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 285238 - 285441
Alignment:
Q  20 caataaattaaatagatggttcagatttattcaaattaaaaag-agaacatgtctaacttttcacattcaacattatcctcaaatagatttcatttatgt 118  Q
    ||||| |||||||| || ||| ||||| ||||||||||||| | |||||||||| |||||||||||||||| |||||||| | ||   ||||| ||||||    
T  285238 caatagattaaataaattgtttagattcattcaaattaaaagggagaacatgtcaaacttttcacattcaatattatcctaagatgattttcacttatgt 285337  T
Q  119 ta--------tactataattcttctatcaaaatgagatgttatctttacttccaatgatcatgcactcaaaccataaaaatatgagatcaaattatgaac 210  Q
    |         |||| | |||| ||  ||||||||||||  | ||||||||||||||||| |||||||||||||||  |||| ||| ||||||||||||||    
T  285338 ttacaattcctactctgattcatccttcaaaatgagatactctctttacttccaatgattatgcactcaaaccat--aaatctgatatcaaattatgaac 285435  T
Q  211 cctaaa 216  Q
    ||||||    
T  285436 cctaaa 285441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 7754060 - 7754137
Alignment:
Q  8 cgaagaaaataccaataaattaaatagatggttcagatttattcaaattaaaa-agagaacatgtctaacttttcaca 84  Q
    |||| ||||||||||||||| |||||||| |||||||||||||||||||||||  ||||| |||| ||||||||||||    
T  7754060 cgaaaaaaataccaataaataaaatagatagttcagatttattcaaattaaaagggagaatatgtgtaacttttcaca 7754137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 38406904 - 38406867
Alignment:
Q  187 aaaatatgagatcaaattatgaaccctaaactaaaaaa 224  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  38406904 aaaatctgagatcaaattatgaaccctaaattaaaaaa 38406867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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