View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7045_low_16 (Length: 241)
Name: NF7045_low_16
Description: NF7045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7045_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 44376998 - 44377220
Alignment:
| Q |
2 |
ttcaaagtcattgttatggagtaaattcaattgatcaaccattggtgaattgagaagagcaatataatttggacggatcttaatttgatccttctttaat |
101 |
Q |
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| T |
44376998 |
ttcaaagtcattgttatggagtaaattcaattgatcaaccattggtgaattgagaagagcaatataatttggacggatcttaatttgatccttctttaat |
44377097 |
T |
|
| Q |
102 |
aattatacattcgtattattgttataatgttaaaggaaaaaattcggttatctg-aaaaatggatattccattaataatagtttcaagcttgcaataaat |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44377098 |
aattatacattcgtattattgttattatgttaaaggaaaaaattcggttatctgaaaaaatggatattccattaataatagtttcaagcttgcaataaat |
44377197 |
T |
|
| Q |
201 |
ggatgacaaacaaaagaaaagat |
223 |
Q |
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||||| ||||||||||||||||| |
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| T |
44377198 |
ggatggcaaacaaaagaaaagat |
44377220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 8113728 - 8113948
Alignment:
| Q |
1 |
tttcaaagtcattgttatggagtaaattcaattgatcaaccattggtgaattgagaagagcaatataatttggacggatcttaatttgatccttctttaa |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8113728 |
tttcaaagtcattgttatggagtaaattcatttgatcaaccattggtgaattgagaagagcaatataatttggacggatcttaatttgatccttctttaa |
8113827 |
T |
|
| Q |
101 |
taattatacattcgtattattgttataatgttaaaggaaaaaattcggttatctg-aaaaatggatattccattaataatagtttcaagcttgcaataaa |
199 |
Q |
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| T |
8113828 |
taattatacattcgtattattgttattatgttaaaggaaaaaattcggttatctgaaaaaatggatattccattaataatagtttcaagcttacaataaa |
8113927 |
T |
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| Q |
200 |
tggatgacaaacaaaagaaaa |
220 |
Q |
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||||||||||||||||||||| |
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| T |
8113928 |
tggatgacaaacaaaagaaaa |
8113948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 66 - 220
Target Start/End: Complemental strand, 8302710 - 8302555
Alignment:
| Q |
66 |
taatttggacggatcttaatttgatccttctttaataattatacattcgtattattgttataatgttaaaggaaaaaattcggttatctg---------a |
156 |
Q |
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|||||||||||||||||||||||| ||| |||| |||||||||||||| ||||||| ||||||||||||||||| | ||| || | |
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| T |
8302710 |
taatttggacggatcttaatttgaccctcctttgataattatacattcatattatt--------gttaaaggaaaaaattcagctatgtgaagaagaaaa |
8302619 |
T |
|
| Q |
157 |
aaaatggatattccattaataatagtttcaagcttgcaataaatggatgacaaacaaaagaaaa |
220 |
Q |
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|||| ||||||| |||||||||||||||||||||||| ||||||| |||||||||||| |||| |
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| T |
8302618 |
aaaaaagatattcgattaataatagtttcaagcttgcactaaatggttgacaaacaaaaaaaaa |
8302555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 41419115 - 41419337
Alignment:
| Q |
1 |
tttcaaagtcattgttatggagtaaattcaattgatcaaccattggtgaattgagaagagcaatataatttggacggatcttaatttgatccttctttaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
41419115 |
tttcaaagtcattgttatggagtaaattcaattgatcaaccattggtgaattgagaagagcaatataatttggacggattttaatttgatccttctttaa |
41419214 |
T |
|
| Q |
101 |
taattatacattcgtattattgttataatgttaaaggaaaaaattcggttatctgaaaaatggatattccattaataatagtttcaagcttgcaataaat |
200 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41419215 |
taattatacattcgtattattgttattgtgttaaagaaaaaaattcgattatctgaaaaatggatattccattaataatagtttcaagcttgcaataaat |
41419314 |
T |
|
| Q |
201 |
ggatgacaaacaaaagaaaagat |
223 |
Q |
| |
|
||||||||||||||| ||||||| |
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| T |
41419315 |
ggatgacaaacaaaaaaaaagat |
41419337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 33261106 - 33260904
Alignment:
| Q |
8 |
gtcattgttatggagtaaattcaattgatcaaccattggtgaattgagaagagcaatataatttggacggatcttaatttgatccttctttaataattat |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
33261106 |
gtcattgttatggagtaaattcaattgatcaaccataggtgaattgagaagagcaatataatttggacggatcttaatttgatcctcctttgataattat |
33261007 |
T |
|
| Q |
108 |
acattcgtattattgttataatgttaaaggaaaaaattcggttatctgaaaaatggatattccattaataatagtttcaagcttgcaataaatggatgac |
207 |
Q |
| |
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|||||| |||||||||||| |||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
33261006 |
acattcatattattgttattatgttaaaggaaaaaattaagttatctaaaaaatggatattcgattaataatagtttcaagcttgcaataaatggatgac |
33260907 |
T |
|
| Q |
208 |
aaa |
210 |
Q |
| |
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||| |
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|
| T |
33260906 |
aaa |
33260904 |
T |
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