View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7045_low_19 (Length: 220)

Name: NF7045_low_19
Description: NF7045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7045_low_19
NF7045_low_19
[»] scaffold0047 (1 HSPs)
scaffold0047 (27-196)||(57543-57715)
[»] chr7 (1 HSPs)
chr7 (135-199)||(14710571-14710635)
[»] scaffold0285 (1 HSPs)
scaffold0285 (135-198)||(9106-9169)
[»] chr2 (4 HSPs)
chr2 (135-198)||(1925195-1925258)
chr2 (149-199)||(25815358-25815408)
chr2 (135-199)||(21187611-21187675)
chr2 (138-175)||(19704733-19704770)
[»] chr1 (3 HSPs)
chr1 (135-196)||(16765249-16765310)
chr1 (135-199)||(14715188-14715252)
chr1 (149-197)||(18491406-18491454)
[»] scaffold0021 (1 HSPs)
scaffold0021 (149-200)||(325-376)
[»] chr8 (2 HSPs)
chr8 (135-198)||(19463376-19463439)
chr8 (135-198)||(19561055-19561118)
[»] chr3 (4 HSPs)
chr3 (135-198)||(29899685-29899748)
chr3 (135-198)||(8334215-8334278)
chr3 (135-199)||(10205548-10205612)
chr3 (139-199)||(16202736-16202796)
[»] chr5 (2 HSPs)
chr5 (135-199)||(22370668-22370732)
chr5 (135-198)||(19304542-19304605)
[»] chr4 (1 HSPs)
chr4 (139-198)||(17735954-17736013)


Alignment Details
Target: scaffold0047 (Bit Score: 122; Significance: 9e-63; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 27 - 196
Target Start/End: Original strand, 57543 - 57715
Alignment:
Q  27 aaaaactgtcctgctttccta--cgacaacggatttgagcggtaacaaaa-atatgtacaataattatacactaccacaacacaatatgaaatctgttcc 123  Q
    |||||| ||||||||||||||  |||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  57543 aaaaaccgtcctgctttcctatacgacaacgaatttgagcggtaacaaaaaatatgtacaattattatacactaccacaacacaatatgaaatccgttcc 57642  T
Q  124 ttatagagccataccagaacggttcttttaccttccaaaaattaggcgttgtcgtagagccaaaaggttgtag 196  Q
    |||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||| |||||||    
T  57643 ttatagagccataccagaacggtttttttacctttaaaaaattaggcgttgtcgtagagccaaaatgttgtag 57715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 135 - 199
Target Start/End: Complemental strand, 14710635 - 14710571
Alignment:
Q  135 taccagaacggttcttttaccttccaaaaattaggcgttgtcgtagagccaaaaggttgtagtgt 199  Q
    ||||| ||||||| ||||||||||||||| |||||||||||||||| ||||||| ||||||||||    
T  14710635 taccaaaacggtttttttaccttccaaaatttaggcgttgtcgtagggccaaaatgttgtagtgt 14710571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0285 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 135 - 198
Target Start/End: Original strand, 9106 - 9169
Alignment:
Q  135 taccagaacggttcttttaccttccaaaaattaggcgttgtcgtagagccaaaaggttgtagtg 198  Q
    |||||||||  || ||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  9106 taccagaacaatttttttaccttccaaaatttaggcgttgtcgtagagccaaaatgttgtagtg 9169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 135 - 198
Target Start/End: Original strand, 1925195 - 1925258
Alignment:
Q  135 taccagaacggttcttttaccttccaaaaattaggcgttgtcgtagagccaaaaggttgtagtg 198  Q
    ||||| ||||||| ||||||||||||||| |||||||||||||||| ||||||| |||||||||    
T  1925195 taccaaaacggtttttttaccttccaaaatttaggcgttgtcgtagggccaaaatgttgtagtg 1925258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 199
Target Start/End: Original strand, 25815358 - 25815408
Alignment:
Q  149 ttttaccttccaaaaattaggcgttgtcgtagagccaaaaggttgtagtgt 199  Q
    ||||||||||||||| |||||||||||||||| ||||||| ||||||||||    
T  25815358 ttttaccttccaaaatttaggcgttgtcgtagggccaaaatgttgtagtgt 25815408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 21187611 - 21187675
Alignment:
Q  135 taccagaacggttcttttaccttccaaaaattaggcgttgtcgtagagccaaaaggttgtagtgt 199  Q
    ||||| ||| ||| |||||| ||| |||||||||||||||||||| |||||||| ||||||||||    
T  21187611 taccaaaacagtttttttacattcaaaaaattaggcgttgtcgtaaagccaaaatgttgtagtgt 21187675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 175
Target Start/End: Complemental strand, 19704770 - 19704733
Alignment:
Q  138 cagaacggttcttttaccttccaaaaattaggcgttgt 175  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  19704770 cagaacggtttttttaccttccaaaatttaggcgttgt 19704733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 16765249 - 16765310
Alignment:
Q  135 taccagaacggttcttttaccttccaaaaattaggcgttgtcgtagagccaaaaggttgtag 196  Q
    |||||||||  || ||||||||||||||| |||||||||||||||||||||||| |||||||    
T  16765249 taccagaacaatttttttaccttccaaaatttaggcgttgtcgtagagccaaaatgttgtag 16765310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 14715188 - 14715252
Alignment:
Q  135 taccagaacggttcttttaccttccaaaaattaggcgttgtcgtagagccaaaaggttgtagtgt 199  Q
    |||||| |||||| |||||| |||||||| |||||||||||||||| ||||||| ||||||||||    
T  14715188 taccaggacggtttttttactttccaaaatttaggcgttgtcgtagggccaaaatgttgtagtgt 14715252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 18491406 - 18491454
Alignment:
Q  149 ttttaccttccaaaaattaggcgttgtcgtagagccaaaaggttgtagt 197  Q
    ||||||| || |||||||||||||||||||||  |||||| ||||||||    
T  18491406 ttttaccgtcaaaaaattaggcgttgtcgtaggcccaaaatgttgtagt 18491454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 149 - 200
Target Start/End: Original strand, 325 - 376
Alignment:
Q  149 ttttaccttccaaaaattaggcgttgtcgtagagccaaaaggttgtagtgtg 200  Q
    ||||||||||||||| |||||||||||||||| ||||||| |||||||||||    
T  325 ttttaccttccaaaatttaggcgttgtcgtagggccaaaatgttgtagtgtg 376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 135 - 198
Target Start/End: Complemental strand, 19463439 - 19463376
Alignment:
Q  135 taccagaacggttcttttaccttccaaaaattaggcgttgtcgtagagccaaaaggttgtagtg 198  Q
    |||||| | |||| ||||||||||| ||| |||||||||||||||||||||||| |||||||||    
T  19463439 taccaggagggtttttttaccttccgaaatttaggcgttgtcgtagagccaaaatgttgtagtg 19463376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 135 - 198
Target Start/End: Complemental strand, 19561118 - 19561055
Alignment:
Q  135 taccagaacggttcttttaccttccaaaaattaggcgttgtcgtagagccaaaaggttgtagtg 198  Q
    |||||| | |||| ||||||||||| ||| |||||||||||||||||||||||| |||||||||    
T  19561118 taccaggagggtttttttaccttccgaaatttaggcgttgtcgtagagccaaaatgttgtagtg 19561055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 135 - 198
Target Start/End: Complemental strand, 29899748 - 29899685
Alignment:
Q  135 taccagaacggttcttttaccttccaaaaattaggcgttgtcgtagagccaaaaggttgtagtg 198  Q
    |||||| |||||| |||||| |||||||| |||||||||||||||| ||||||| |||||||||    
T  29899748 taccaggacggtttttttactttccaaaatttaggcgttgtcgtagggccaaaatgttgtagtg 29899685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 198
Target Start/End: Complemental strand, 8334278 - 8334215
Alignment:
Q  135 taccagaacggttcttttaccttccaaaaattaggcgttgtcgtagagccaaaaggttgtagtg 198  Q
    ||||| ||| ||| |||||| ||||| |||||||||||| |||||||||||||| |||||||||    
T  8334278 taccaaaacagttattttacattccataaattaggcgttctcgtagagccaaaatgttgtagtg 8334215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 199
Target Start/End: Complemental strand, 10205612 - 10205548
Alignment:
Q  135 taccagaacggttcttttaccttccaaaaattaggcgttgtcgtagagccaaaaggttgtagtgt 199  Q
    ||||||||| ||| ||||||||| ||||| ||||| ||| |||||||||||||| ||| ||||||    
T  10205612 taccagaacagtttttttacctttcaaaatttaggtgttctcgtagagccaaaatgttatagtgt 10205548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 16202796 - 16202736
Alignment:
Q  139 agaacggttcttttaccttccaaaaattaggcgttgtcgtagagccaaaaggttgtagtgt 199  Q
    ||||| ||| |||||||||| |||||||||||||||| ||||||| |||| ||||| ||||    
T  16202796 agaacagtttttttaccttcaaaaaattaggcgttgttgtagagctaaaatgttgttgtgt 16202736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 199
Target Start/End: Complemental strand, 22370732 - 22370668
Alignment:
Q  135 taccagaacggttcttttaccttccaaaaattaggcgttgtcgtagagccaaaaggttgtagtgt 199  Q
    ||||| ||||||| ||||||||| ||||| |||||||||||||||| | ||||| ||||||||||    
T  22370732 taccaaaacggtttttttacctttcaaaatttaggcgttgtcgtagggtcaaaatgttgtagtgt 22370668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 198
Target Start/End: Complemental strand, 19304605 - 19304542
Alignment:
Q  135 taccagaacggttcttttaccttccaaaaattaggcgttgtcgtagagccaaaaggttgtagtg 198  Q
    |||||||||  || ||||||||||||||| ||||||||||| |||| |||||||  ||||||||    
T  19304605 taccagaacaatttttttaccttccaaaatttaggcgttgttgtagggccaaaatattgtagtg 19304542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 17735954 - 17736013
Alignment:
Q  139 agaacggttcttttaccttccaaaaattaggcgttgtcgtagagccaaaaggttgtagtg 198  Q
    ||||| ||| ||||||| || ||||||||| ||||||||||| ||||||| |||||||||    
T  17735954 agaacagtttttttaccgtcaaaaaattagacgttgtcgtagggccaaaatgttgtagtg 17736013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University