View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7045_low_2 (Length: 575)
Name: NF7045_low_2
Description: NF7045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7045_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 52 - 558
Target Start/End: Complemental strand, 42895567 - 42895060
Alignment:
| Q |
52 |
caaaacacatcaaattatcaaaataattttatttagctaaggaagggggaggnnnnnnnnn-ggtggaaaaaaggttggcatttatcatctgacgtaata |
150 |
Q |
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| T |
42895567 |
caaaacacatcaaatgatcaaaataattttatttagctaaggaagggggaggaaaaaaaataggtggaaaaaaggttggcatttatcatctgacgtaata |
42895468 |
T |
|
| Q |
151 |
tctccgtcattatgctcaactgtctcaattactcttgcatttatgtgatttaaatggtcttaatagaatggccannnnnnnnncaatgcttggaactacc |
250 |
Q |
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| T |
42895467 |
tctccgtcattatgctcaactgtctcaattactcttgcatttatgtgatttaaatggtcttaatagaatggccatttttttttcaatgcttggaactacc |
42895368 |
T |
|
| Q |
251 |
caacccaacccactctctataccatccattgttttgtagttttactcatcctcctcctcctaacacaatcaaattttcttatactatacgacatacaact |
350 |
Q |
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| T |
42895367 |
caacccaacccactctctataccatcctttgttttgtagttttactcatcctcctcctcctaacacaatcaaattttcttatactatacgacatacaact |
42895268 |
T |
|
| Q |
351 |
ttcacgttattgctctcattatactcgtggatacacatgacctagaaatgatggatattaaaatatatttttcttattaaaaaatcaaacactattataa |
450 |
Q |
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| T |
42895267 |
ttcacgttattgttctcattatactcgtggatacacatgacctagaaatgatggatattaaaatatatttttcttattaaaaactcaaacactattataa |
42895168 |
T |
|
| Q |
451 |
gaaaaattcccccattgactacctataggggatctgaatgaaatcagaaaattaaatttgctatgatgatcgaaattgttagcaagcaatcttaaataaa |
550 |
Q |
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| T |
42895167 |
gaaaaattcccccattgactacctataggggatctgaatgaaattagaaaattaaatttgctatgatgatcgaaattgttagcaagcaatcttaaataaa |
42895068 |
T |
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| Q |
551 |
gtcaactt |
558 |
Q |
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| T |
42895067 |
gtcaactt |
42895060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 147 - 217
Target Start/End: Original strand, 25581381 - 25581451
Alignment:
| Q |
147 |
aatatctccgtcattatgctcaactgtctcaattactcttgcatttatgtgatttaaatggtcttaataga |
217 |
Q |
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||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25581381 |
aatatctccttcattattctcaactgtctcaattactcttgcatttatgtgatttaaatggtcttaataga |
25581451 |
T |
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