View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7045_low_4 (Length: 413)
Name: NF7045_low_4
Description: NF7045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7045_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 18 - 405
Target Start/End: Complemental strand, 30574677 - 30574288
Alignment:
| Q |
18 |
aaacaaatttgcattacaaagcattttgatattctctg--agttgtgaggaatattcaagttttcaaagagtatttgtgagaacaaaattttatctcaat |
115 |
Q |
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| T |
30574677 |
aaacaaatttgcattacaaagcattttgatattctctgtgagttgtgaggaatattcaagttttcaaagagtatttgtgagaacaaaatttgatctcaat |
30574578 |
T |
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| Q |
116 |
tattgagacgatactaactggtgtttgatatattggcaaacgtgaagatagctagaatcatctttgttaaaatacagtgtaatgctatatttgagatttt |
215 |
Q |
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| T |
30574577 |
tattaagacgatactaactggtgtttgatatattggcaaacgtgaagatagctagaatcatctttgttaaaatacagtgtaatgctatatttgagatttt |
30574478 |
T |
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| Q |
216 |
agatggacaaccataacatttgcataagttattatgctaaagtttcacatgcatcaagatgttccttatagaaaaatctgtcaatgtctgctgctatatt |
315 |
Q |
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| T |
30574477 |
agatggacacccataacatttgcataagttattatgctaaagtttcacatgcatcaagatgttccttatagaaaaatctgtcaatgtctgctgctatatt |
30574378 |
T |
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| Q |
316 |
ttaaagcaaaagaccatattacaagtctgctgcttttctatttccaacgacagtctgctacagcctacagccactttgattcactgatct |
405 |
Q |
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| T |
30574377 |
ttaaagcaaaaaaccatattacaagtctgctgcttttctatttccaaggacagtctgctacagcctacagccactttgattcactgatct |
30574288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 178 - 332
Target Start/End: Complemental strand, 30570610 - 30570457
Alignment:
| Q |
178 |
tttgttaaaatacagtgtaatgctatatttgagattttagatggacaaccataacatttgcataagttattatgctaaagtttcacatgcatcaagatgt |
277 |
Q |
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| T |
30570610 |
tttgttaaaatacaatgtaatgctatatttgagattttagatggacaaccataacatttgcatcagttattatgctaaagtttcacatgcatc-agatgt |
30570512 |
T |
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| Q |
278 |
tccttatagaaaaatctgtcaatgtctgctgctatattttaaagcaaaagaccat |
332 |
Q |
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| T |
30570511 |
tccttgtagaaaaatctgtcaatgtctgctgctacattttaaagcaaaagaccat |
30570457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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