View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7045_low_6 (Length: 401)
Name: NF7045_low_6
Description: NF7045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7045_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 4652887 - 4653273
Alignment:
| Q |
1 |
ttcgactttcgtgtttagggtgcaaaaacaagccattctaccgtgttatggcttctgatagcagatctccaagagatggaaagcacctcgaagttcttgg |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4652887 |
ttcgactttcatgtttagggtgcaaaaacaagccattctaccgtgttatggcttctgatagcagatctccaagagatggaaagcacctcgaagttcttgg |
4652986 |
T |
|
| Q |
101 |
ttactataatcccttacctggtcaagatggtggcaaaagaatgggtatcaactttgatagagtcaagtaagtagtcattaatactgatagaaatggaaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4652987 |
ttactataatcccttacctggtcaagatggtggcaaaagaatgggtatcaactttgatagagtcaagtaagtagtcattaatactgatagaaatggaaag |
4653086 |
T |
|
| Q |
201 |
cacactcgtcagtgctcgtcatgacactaacacatgtgattgcactcagttaaataatttttcaaattatcattgatgtcgacgtgtctatgtaagtaca |
300 |
Q |
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| T |
4653087 |
cacactcgtcagtgcccgtcatgacactaacacatgtgattgtactcatttaaataatttttcaaattatcattgatgtcgacgtgtctatggaagtaca |
4653186 |
T |
|
| Q |
301 |
tgatgtatgtgtcggtgattccatgacctttttgattgaatgcgattacattcaattaattcattttttcaatatattactgatgtc |
387 |
Q |
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| T |
4653187 |
tgatgtatgtgtcggtgattccatgacctttttgattgaatgcgattacattcaattaattcattttttcaatatattactgatgtc |
4653273 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 13 - 185
Target Start/End: Original strand, 17426931 - 17427103
Alignment:
| Q |
13 |
gtttagggtgcaaaaacaagccattctaccgtgttatggcttctgatagcagatctccaagagatggaaagcacctcgaagttcttggttactataatcc |
112 |
Q |
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| T |
17426931 |
gtttaggatgcaaaaacaaaccattttaccgtgttatggctgctgatagcagatctccgagagatggaaagcacctcgaagttcttggttactataatcc |
17427030 |
T |
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| Q |
113 |
cttacctggtcaagatggtggcaaaagaatgggtatcaactttgatagagtcaagtaagtagtcattaatact |
185 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
17427031 |
cttacctggtcaagatggtggcaaaagaatgggtatcaactttgatagagtcaagtaagtagttattaatact |
17427103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 202 - 270
Target Start/End: Original strand, 17428840 - 17428908
Alignment:
| Q |
202 |
acactcgtcagtgctcgtcatgacactaacacatgtgattgcactcagttaaataatttttcaaattat |
270 |
Q |
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| T |
17428840 |
acactcgtaagtgcccgttatgacactaacacatgtgattgcattcaattagttaattttttaaattat |
17428908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 339 - 372
Target Start/End: Complemental strand, 24362371 - 24362338
Alignment:
| Q |
339 |
aatgcgattacattcaattaattcattttttcaa |
372 |
Q |
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|||| ||||||||||||||||||||||||||||| |
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| T |
24362371 |
aatgtgattacattcaattaattcattttttcaa |
24362338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 372
Target Start/End: Original strand, 10764088 - 10764120
Alignment:
| Q |
340 |
atgcgattacattcaattaattcattttttcaa |
372 |
Q |
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|||||||||| |||||||||||||||||||||| |
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| T |
10764088 |
atgcgattacgttcaattaattcattttttcaa |
10764120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 372
Target Start/End: Original strand, 1118412 - 1118440
Alignment:
| Q |
344 |
gattacattcaattaattcattttttcaa |
372 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
1118412 |
gattacattcaattaattcattttttcaa |
1118440 |
T |
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