View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7045_low_7 (Length: 367)

Name: NF7045_low_7
Description: NF7045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7045_low_7
NF7045_low_7
[»] chr8 (4 HSPs)
chr8 (13-345)||(23582718-23583050)
chr8 (13-184)||(40271700-40271871)
chr8 (13-160)||(7232694-7232841)
chr8 (13-161)||(38615414-38615562)
[»] chr3 (4 HSPs)
chr3 (13-334)||(48100724-48101045)
chr3 (17-153)||(10534589-10534725)
chr3 (13-161)||(33286146-33286294)
chr3 (13-161)||(34012536-34012684)
[»] chr1 (6 HSPs)
chr1 (13-334)||(9933442-9933763)
chr1 (21-214)||(45033382-45033575)
chr1 (74-214)||(45028534-45028674)
chr1 (21-214)||(24208754-24208947)
chr1 (17-153)||(25625025-25625161)
chr1 (17-64)||(50690260-50690307)
[»] scaffold0009 (2 HSPs)
scaffold0009 (13-232)||(30622-30841)
scaffold0009 (17-153)||(90665-90801)
[»] chr6 (3 HSPs)
chr6 (13-184)||(16593435-16593606)
chr6 (75-216)||(21878045-21878186)
chr6 (21-214)||(33164770-33164963)
[»] scaffold0134 (1 HSPs)
scaffold0134 (13-189)||(39583-39759)
[»] chr4 (4 HSPs)
chr4 (13-86)||(18392254-18392327)
chr4 (13-161)||(16657975-16658123)
chr4 (13-161)||(36648918-36649066)
chr4 (13-161)||(1852469-1852617)
[»] scaffold0169 (1 HSPs)
scaffold0169 (13-161)||(21300-21448)
[»] scaffold0163 (1 HSPs)
scaffold0163 (13-161)||(32201-32349)
[»] chr7 (1 HSPs)
chr7 (13-161)||(7083580-7083728)
[»] chr5 (1 HSPs)
chr5 (21-160)||(12183215-12183354)


Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 13 - 345
Target Start/End: Complemental strand, 23583050 - 23582718
Alignment:
Q  13 catcacctacaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacatacagcgaataatgttaacatcacaagg 112  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||  ||||||||| ||||| |||||||| ||||||||||||||    
T  23583050 catcacctacaagacgagctttgtaacgctcgaaacaaccattagatttcttttgatgaagaaaaatccatatacatcgaataatattaacatcacaagg 23582951  T
Q  113 tcgaggaaccaaatcccacgtgttatttctaataagagcattaaattcagactgcattgtggctttccaattagggttaaatagagctagtttgggattt 212  Q
    ||| ||||||||| ||||| ||||| || ||||||||||||||||||||||||||||||  |||||||||||||||| |||||| |||||||||| ||||    
T  23582950 tcgtggaaccaaaacccacatgttaattataataagagcattaaattcagactgcattgcagctttccaattagggtcaaatagggctagtttggaattt 23582851  T
Q  213 ttgggaagaggtgagatggtcggatcatcaatggtaacagaaaggttaaaaaactttctaggtttgtagatatcccacatgctacgggtggccattgttc 312  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||| | | |||||||||||||||||||||||    
T  23582850 ttgggaagaggggagatggtcggatcatcaatggtaacagaaaggttaaaaagatttctaggtttgcagatacctcgcatgctacgggtggccattgttc 23582751  T
Q  313 gagtgggaggtgcaggttgggccaatggtgtag 345  Q
    ||||| ||||||||||||||| |||| ||||||    
T  23582750 gagtgcgaggtgcaggttggggcaattgtgtag 23582718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 13 - 184
Target Start/End: Original strand, 40271700 - 40271871
Alignment:
Q  13 catcacctacaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacatacagcgaataatgttaacatcacaagg 112  Q
    ||||||||||||||||||||||||||||||||||  | |||| ||| || || ||||| | ||||||||||||||| |||||||  ||| ||||||||||    
T  40271700 catcacctacaagacgagctttataacgctcaaaggagccatcagaatttttcttatgcctaaaaatccacatacatcgaataagattagcatcacaagg 40271799  T
Q  113 tcgaggaaccaaatcccacgtgttatttctaataagagcattaaattcagactgcattgtggctttccaatt 184  Q
     |||||||| ||||||||||| |||||||||||||| |||| ||| ||||| ||||||| || |||||||||    
T  40271800 acgaggaactaaatcccacgtcttatttctaataagtgcatcaaactcagattgcattgcggatttccaatt 40271871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 160
Target Start/End: Original strand, 7232694 - 7232841
Alignment:
Q  13 catcacctacaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacatacagcgaataatgttaacatcacaagg 112  Q
    ||||||||||||| ||||||||||| | ||||||  | ||||  ||||||||||| ||||  || ||||||||| |||||||||  |||||||     ||    
T  7232694 catcacctacaagtcgagctttatacctctcaaatgacccatctgatttctttttgtgacggaatatccacatagagcgaataaaattaacattttgtgg 7232793  T
Q  113 tcgaggaaccaaatcccacgtgttatttctaataagagcattaaattc 160  Q
     ||||| ||||| ||||| || |||||| |||||||||||| ||||||    
T  7232794 acgaggtaccaattcccatgtcttatttttaataagagcatcaaattc 7232841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 38615414 - 38615562
Alignment:
Q  13 catcacctacaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacatacagcgaataatgttaacatcacaagg 112  Q
    ||||||||||||| || |||||||  | |||||||  ||| | |||||| | |||||| | ||||||||||||  | |||||||  |||||||||   ||    
T  38615414 catcacctacaagtcgggctttatgcctctcaaaagtaccgtcagatttttctttatgtctaaaaatccacatggaccgaataacattaacatcaggtgg 38615513  T
Q  113 tcgaggaaccaaatcccacgtgttatttctaataagagcattaaattca 161  Q
    |||||| || |  ||||||||  ||||| |||| ||||||||| |||||    
T  38615514 tcgaggtactaggtcccacgtcctatttttaattagagcattatattca 38615562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 334
Target Start/End: Original strand, 48100724 - 48101045
Alignment:
Q  13 catcacctacaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacatacagcgaataatgttaacatcacaagg 112  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||    
T  48100724 catcaccgacaagacgagctttgtaacgctcaaaacaaccattagatttctttttatgacgaaaaatccacatacagcgaataacattaacatcacaagg 48100823  T
Q  113 tcgaggaaccaaatcccacgtgttatttctaataagagcattaaattcagactgcattgtggctttccaattagggttaaatagagctagtttgggattt 212  Q
    ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||| || ||||| ||||||    
T  48100824 tcgtggaaccaaatcccacgtattatttctaataagagcattaaattcagactgcattgcggctttccaattagggtcagatagggcaagttttggattt 48100923  T
Q  213 ttgggaagaggtgagatggtcggatcatcaatggtaacagaaaggttaaaaaactttctaggtttgtagatatcccacatgctacgggtggccattgttc 312  Q
    |||||||||||||| || ||||||||||||||||||||||| |||||||| | |||| |||||||||||||| ||  ||||||||| |||||||| || |    
T  48100924 ttgggaagaggtgaaatagtcggatcatcaatggtaacagagaggttaaagagctttttaggtttgtagataccctgcatgctacgagtggccatagtcc 48101023  T
Q  313 gagtgggaggtgcaggttgggc 334  Q
    |||||||||||||||| |||||    
T  48101024 gagtgggaggtgcaggctgggc 48101045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 153
Target Start/End: Original strand, 10534589 - 10534725
Alignment:
Q  17 acctacaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacatacagcgaataatgttaacatcacaaggtcga 116  Q
    |||||||| ||||||||| || ||||||||| |||||| ||||||||| || || |  |||||||||| ||  |||||||  ||| ||| | | || |||    
T  10534589 acctacaaaacgagctttgtatcgctcaaaagaaccatcagatttcttcttgtgcctgaaaatccacaaacttcgaataacattagcattagagggacga 10534688  T
Q  117 ggaaccaaatcccacgtgttatttctaataagagcat 153  Q
    ||||| || |||||||| ||||||  |||||||||||    
T  10534689 ggaactaattcccacgtcttattttcaataagagcat 10534725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 33286294 - 33286146
Alignment:
Q  13 catcacctacaagacgagctttataacgctcaaaacaaccattagatttctttttatgac-aaaaaatccacatacagcgaataatgttaacatcacaag 111  Q
    ||||||||||||| || |||||||  | ||||||  |||||| ||| || | |||||| | |||||||||||||| |  |||||||||||||||||   |    
T  33286294 catcacctacaagtcgggctttatgcctctcaaatgaaccatcagagttttctttatgtctaaaaaatccacatagattgaataatgttaacatcaggtg 33286195  T
Q  112 gtcgaggaaccaaatcccacgtgttatttctaataagagcattaaattca 161  Q
    |||| || || ||||| ||||| | |||| |||| ||||||||| |||||    
T  33286194 gtcgtggtactaaatctcacgtctcattt-taattagagcattatattca 33286146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 34012684 - 34012536
Alignment:
Q  13 catcacctacaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacatacagcgaataatgttaacatcacaagg 112  Q
    ||||||||||||| || |||||||  | |||||||  ||| | |||||| | |||||| | ||||||||||||  | |||||||  |||||||||   ||    
T  34012684 catcacctacaagtcgggctttatgcctctcaaaagtaccgtcagatttttctttatgtctaaaaatccacatggaccgaataacattaacatcaggtgg 34012585  T
Q  113 tcgaggaaccaaatcccacgtgttatttctaataagagcattaaattca 161  Q
    |||||| || |  ||||||||  ||||| |||| ||||||||| |||||    
T  34012584 tcgaggtactaggtcccacgtcctatttttaattagagcattatattca 34012536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 334
Target Start/End: Original strand, 9933442 - 9933763
Alignment:
Q  13 catcacctacaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacatacagcgaataatgttaacatcacaagg 112  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||    
T  9933442 catcaccgacaagacgagctttgtaacgctcaaaacaaccattagatttctttttatgacgaaaaatccacatacagcgaataacattaacatcacaagg 9933541  T
Q  113 tcgaggaaccaaatcccacgtgttatttctaataagagcattaaattcagactgcattgtggctttccaattagggttaaatagagctagtttgggattt 212  Q
    ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||| || ||||| ||||||    
T  9933542 tcgtggaaccaaatcccacgtattatttctaataagagcattaaattcagactgcattgcggctttccaattagggtcagatagggcaagttttggattt 9933641  T
Q  213 ttgggaagaggtgagatggtcggatcatcaatggtaacagaaaggttaaaaaactttctaggtttgtagatatcccacatgctacgggtggccattgttc 312  Q
    |||||||||||||| || ||||||||||||||||||||||| |||||||| | |||| |||||||||||||| ||  ||||||||| |||||||| || |    
T  9933642 ttgggaagaggtgaaatagtcggatcatcaatggtaacagagaggttaaagagctttttaggtttgtagataccctgcatgctacgagtggccatagtcc 9933741  T
Q  313 gagtgggaggtgcaggttgggc 334  Q
    |||||||||||||||| |||||    
T  9933742 gagtgggaggtgcaggctgggc 9933763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 21 - 214
Target Start/End: Complemental strand, 45033575 - 45033382
Alignment:
Q  21 acaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacatacagcgaataatgttaacatcacaaggtcgaggaa 120  Q
    ||||| ||||| ||||| ||||||||| | |||| | | || || |||||   ||||||||||||||| |||||||  ||| |||| | ||| |||||||    
T  45033575 acaaggcgagccttatagcgctcaaaagacccatcataatttttcttatgtttaaaaatccacatacatcgaataagattagcatctctagggcgaggaa 45033476  T
Q  121 ccaaatcccacgtgttatttctaataagagcattaaattcagactgcattgtggctttccaattagggttaaatagagctagtttgggattttt 214  Q
    | ||||||||||| |||||||||||||| |||| ||| ||||| ||||||| || ||||||||| ||||   |||  ||||||||| |||||||    
T  45033475 ctaaatcccacgtcttatttctaataagtgcatcaaactcagattgcattgcggatttccaattcgggtccgataaggctagtttgtgattttt 45033382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 74 - 214
Target Start/End: Complemental strand, 45028674 - 45028534
Alignment:
Q  74 aaaaatccacatacagcgaataatgttaacatcacaaggtcgaggaaccaaatcccacgtgttatttctaataagagcattaaattcagactgcattgtg 173  Q
    ||||||||||||||| |||||||  ||| |||| | ||| |||||||| ||||||||||| |||||||||||||| |||| ||| ||||| ||||||| |    
T  45028674 aaaaatccacatacatcgaataagattagcatctctagggcgaggaactaaatcccacgtcttatttctaataagtgcatcaaactcagattgcattgcg 45028575  T
Q  174 gctttccaattagggttaaatagagctagtttgggattttt 214  Q
    | ||||||||| ||||   |||  ||||||||| |||||||    
T  45028574 gatttccaattcgggtacgataaggctagtttgtgattttt 45028534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 214
Target Start/End: Complemental strand, 24208947 - 24208754
Alignment:
Q  21 acaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacatacagcgaataatgttaacatcacaaggtcgaggaa 120  Q
    ||||| ||||| ||||| ||||||||| | |||| ||| || || |||||   ||||||||||||||| |||||||  ||| |||| | ||| |||||||    
T  24208947 acaaggcgagccttatagcgctcaaaagacccatcagaatttttcttatgtttaaaaatccacatacatcgaataagattagcatctctagggcgaggaa 24208848  T
Q  121 ccaaatcccacgtgttatttctaataagagcattaaattcagactgcattgtggctttccaattagggttaaatagagctagtttgggattttt 214  Q
    | ||||||||| | |||||||||||||| |||| ||| ||||| |||||||  | ||||||||| ||||   |||  ||||||||| |||||||    
T  24208847 ctaaatcccacatcttatttctaataagtgcatcaaactcagattgcattgcagatttccaattcgggtccgataaggctagtttgtgattttt 24208754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 153
Target Start/End: Original strand, 25625025 - 25625161
Alignment:
Q  17 acctacaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacatacagcgaataatgttaacatcacaaggtcga 116  Q
    |||||||||||||||||| || ||||| ||| |||||| ||||||||| || || |  |||||||||| ||  |||||||  ||| ||| | | || |||    
T  25625025 acctacaagacgagctttgtatcgctccaaagaaccatcagatttcttcttgtgcctgaaaatccacaaacttcgaataacattagcattagagggacga 25625124  T
Q  117 ggaaccaaatcccacgtgttatttctaataagagcat 153  Q
    ||||| || |||||||| ||||||  |||||||||||    
T  25625125 ggaactaattcccacgtcttattttcaataagagcat 25625161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 50690307 - 50690260
Alignment:
Q  17 acctacaagacgagctttataacgctcaaaacaaccattagatttctt 64  Q
    |||||||||||||||||| |||||||||||  |||||| |||||||||    
T  50690307 acctacaagacgagctttgtaacgctcaaatgaaccatcagatttctt 50690260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 13 - 232
Target Start/End: Complemental strand, 30841 - 30622
Alignment:
Q  13 catcacctacaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacatacagcgaataatgttaacatcacaagg 112  Q
    |||||||||| |||||||||||||||||||||||| | |||| ||| || || ||||| | ||||||||||||| | |||||||  ||| ||||||||||    
T  30841 catcacctactagacgagctttataacgctcaaaagagccatcagaatttttcttatgcctaaaaatccacataaatcgaataagattagcatcacaagg 30742  T
Q  113 tcgaggaaccaaatcccacgtgttatttctaataagagcattaaattcagactgcattgtggctttccaattagggttaaatagagctagtttgggattt 212  Q
     |||||||| ||||||||||| ||||||| ||||||||||| ||||||||| ||||||| || ||||||||| ||||   |||  ||||||||||| |||    
T  30741 acgaggaactaaatcccacgtcttatttcgaataagagcatcaaattcagattgcattgcggatttccaattcgggtctgataaggctagtttggggttt 30642  T
Q  213 ttgggaagaggtgagatggt 232  Q
    || || || || ||||||||    
T  30641 ttaggtaggggagagatggt 30622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 153
Target Start/End: Complemental strand, 90801 - 90665
Alignment:
Q  17 acctacaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacatacagcgaataatgttaacatcacaaggtcga 116  Q
    |||||||||||||||||| || ||||||||| || ||| ||||||||| || || |  |||||||||| ||  |||||||  ||| ||| | | || |||    
T  90801 acctacaagacgagctttgtatcgctcaaaagaaacatcagatttcttcttgtgcctgaaaatccacaaacttcgaataacattagcattagagggacga 90702  T
Q  117 ggaaccaaatcccacgtgttatttctaataagagcat 153  Q
    ||||| || |||||||| ||||||  |||||||||||    
T  90701 ggaactaattcccacgtcttattttcaataagagcat 90665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 8e-40; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 13 - 184
Target Start/End: Complemental strand, 16593606 - 16593435
Alignment:
Q  13 catcacctacaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacatacagcgaataatgttaacatcacaagg 112  Q
    ||||||||||||||||||||||||| ||||||||  | |||| ||| || || ||||| | ||||||||||||||| |||||||  ||| ||||||||||    
T  16593606 catcacctacaagacgagctttatagcgctcaaaggagccatcagaatttttcttatgcctaaaaatccacatacatcgaataagattagcatcacaagg 16593507  T
Q  113 tcgaggaaccaaatcccacgtgttatttctaataagagcattaaattcagactgcattgtggctttccaatt 184  Q
     |||||||| ||||||||||| |||||||||||||| |||| ||||||||| ||||||| || |||||||||    
T  16593506 acgaggaactaaatcccacgtcttatttctaataagtgcatcaaattcagattgcattgcggatttccaatt 16593435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 75 - 216
Target Start/End: Original strand, 21878045 - 21878186
Alignment:
Q  75 aaaatccacatacagcgaataatgttaacatcacaaggtcgaggaaccaaatcccacgtgttatttctaataagagcattaaattcagactgcattgtgg 174  Q
    ||||| |||||| || |||||||||||||||||||||||||  ||| || ||||||| | |||||||||||||||  |||||| ||||||||||||||||    
T  21878045 aaaattcacatatagtgaataatgttaacatcacaaggtcggagaatcagatcccacatattatttctaataagaatattaaaatcagactgcattgtgg 21878144  T
Q  175 ctttccaattagggttaaatagagctagtttgggatttttgg 216  Q
     |||||||||| ||||| |||| |||| |||| | |||||||    
T  21878145 atttccaattatggttatatagggctaatttgaggtttttgg 21878186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 21 - 214
Target Start/End: Complemental strand, 33164963 - 33164770
Alignment:
Q  21 acaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacatacagcgaataatgttaacatcacaaggtcgaggaa 120  Q
    ||||| ||||| ||||| ||||||||| | |||| | | || || |||||   ||||||||||||||| |||||||  ||| |||| | ||| |||||||    
T  33164963 acaaggcgagccttatagcgctcaaaagacccatcaaaatttttcttatgtttaaaaatccacatacatcgaataagattagcatctctagggcgaggaa 33164864  T
Q  121 ccaaatcccacgtgttatttctaataagagcattaaattcagactgcattgtggctttccaattagggttaaatagagctagtttgggattttt 214  Q
    | ||||||||| | |||||||||||||| |||| ||| ||||| |||||||  | ||||||||| ||||   |||  ||||||||| |||||||    
T  33164863 ctaaatcccacatcttatttctaataagtgcatcaaactcagattgcattgcagatttccaattcgggtccgataaggctagtttgtgattttt 33164770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 13 - 189
Target Start/End: Complemental strand, 39759 - 39583
Alignment:
Q  13 catcacctacaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacatacagcgaataatgttaacatcacaagg 112  Q
    |||||| |||||||||||| ||||| ||| ||||  | |||| | | || || |||||   ||||||||||||||| ||||||| |||| | || | |||    
T  39759 catcacatacaagacgagccttatagcgcgcaaatgagccatcaaaatttttcttatgtttaaaaatccacatacatcgaataaggttagcgtccccagg 39660  T
Q  113 tcgaggaaccaaatcccacgtgttatttctaataagagcattaaattcagactgcattgtggctttccaattagggt 189  Q
     || ||||| ||||||||||| ||||||||||||||||||| ||||||||| ||||||| || ||||||||| ||||    
T  39659 acgcggaactaaatcccacgtcttatttctaataagagcatcaaattcagattgcattgcggatttccaattcgggt 39583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 18392327 - 18392254
Alignment:
Q  13 catcacctacaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacata 86  Q
    |||||||||||||||| |||||||  | ||||||| ||| ||||||||||| |||||| | |||||||||||||    
T  18392327 catcacctacaagacgggctttatgcctctcaaaagaacaattagatttctctttatgtctaaaaatccacata 18392254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 16657975 - 16658123
Alignment:
Q  13 catcacctacaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacatacagcgaataatgttaacatcacaagg 112  Q
    ||||||||||||| || |||||||  | ||||||  |||||| ||| || | |||||| | ||||||||||||| | ||||||| ||||| ||||   ||    
T  16657975 catcacctacaagtcgggctttatgcctctcaaatgaaccatcagagttttctttatgtctaaaaatccacatagatcgaataacgttaatatcaggtgg 16658074  T
Q  113 tcgaggaaccaaatcccacgtgttatttctaataagagcattaaattca 161  Q
    ||| || || ||||||||||| | |||| |||| ||||||||| |||||    
T  16658075 tcgtggtactaaatcccacgtctcatttttaattagagcattatattca 16658123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 36649066 - 36648918
Alignment:
Q  13 catcacctacaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacatacagcgaataatgttaacatcacaagg 112  Q
    |||||||||||||||| || ||||| | |||||||  ||||| |||||| | |||||||   |||||||||||| | ||||| |  || ||||||   ||    
T  36649066 catcacctacaagacgggccttatacctctcaaaaacaccatcagatttttctttatgagtgaaaatccacatagaccgaatcacatttacatcaggtgg 36648967  T
Q  113 tcgaggaaccaaatcccacgtgttatttctaataagagcattaaattca 161  Q
     || || ||||| |||||||| |||||| |||||||||| |||||||||    
T  36648966 acggggcaccaactcccacgtcttatttttaataagagcgttaaattca 36648918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 1852617 - 1852469
Alignment:
Q  13 catcacctacaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacatacagcgaataatgttaacatcacaagg 112  Q
    |||||||||||||||| || ||||| | |||||||  ||||| |||||| | |||||||   |||||||||||| | ||||| |  || ||||||   ||    
T  1852617 catcacctacaagacgggccttatacctctcaaaaacaccatcagatttttctttatgagtgaaaatccacatagaccgaatcacatttacatcaggtgg 1852518  T
Q  113 tcgaggaaccaaatcccacgtgttatttctaataagagcattaaattca 161  Q
     || || ||||| |||||||| |||||| |||||||||| || ||||||    
T  1852517 acggggcaccaactcccacgtcttatttttaataagagcgtttaattca 1852469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 21448 - 21300
Alignment:
Q  13 catcacctacaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacatacagcgaataatgttaacatcacaagg 112  Q
    |||||||||||||||| || ||||| | |||||||  ||||| |||||| | |||||||   |||||||||||| | ||||| |  || ||||||   ||    
T  21448 catcacctacaagacgggccttatacctctcaaaaacaccatcagatttttctttatgagtgaaaatccacatagaccgaatcacatttacatcaggtgg 21349  T
Q  113 tcgaggaaccaaatcccacgtgttatttctaataagagcattaaattca 161  Q
     || || ||||| |||||||| |||||| |||||||||| |||||||||    
T  21348 acggggcaccaactcccacgtcttatttttaataagagcgttaaattca 21300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 32201 - 32349
Alignment:
Q  13 catcacctacaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacatacagcgaataatgttaacatcacaagg 112  Q
    ||||||||||||| |  |||||||  | ||||||  |||||| ||| || | |||||| | ||||||||||||| | ||||||| ||||||||||   ||    
T  32201 catcacctacaagtcaggctttatgcctctcaaatgaaccatcagagttttctttatgtctaaaaatccacatagatcgaataacgttaacatcaggtgg 32300  T
Q  113 tcgaggaaccaaatcccacgtgttatttctaataagagcattaaattca 161  Q
    ||| || || ||||| ||||| | |||| |||| ||||||||| |||||    
T  32301 tcgtggtactaaatctcacgtctcatttttaattagagcattatattca 32349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 7083728 - 7083580
Alignment:
Q  13 catcacctacaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacatacagcgaataatgttaacatcacaagg 112  Q
    |||||||||||||||| || ||||| | |||||||  ||||| |||||| | |||||||   |||||||||||| | ||||| |  || ||||||   ||    
T  7083728 catcacctacaagacgggccttatacctctcaaaaacaccatcagatttttctttatgagtgaaaatccacatagaccgaatcacatttacatcaggtgg 7083629  T
Q  113 tcgaggaaccaaatcccacgtgttatttctaataagagcattaaattca 161  Q
     || || ||||| |||||||| |||||  |||||||||| |||||||||    
T  7083628 acggggcaccaactcccacgtcttattcttaataagagcgttaaattca 7083580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 160
Target Start/End: Original strand, 12183215 - 12183354
Alignment:
Q  21 acaagacgagctttataacgctcaaaacaaccattagatttctttttatgacaaaaaatccacatacagcgaataatgttaacatcacaaggtcgaggaa 120  Q
    ||||||||||| ||||| ||||| |||  ||| |||||||| | ||| ||   ||||| ||| ||||| ||| |||| |||||||||  ||| || ||||    
T  12183215 acaagacgagccttataccgctccaaatcaccgttagatttatatttgtgtttaaaaaaccaaatacatcgagtaatattaacatcaggaggacggggaa 12183314  T
Q  121 ccaaatcccacgtgttatttctaataagagcattaaattc 160  Q
    ||||  |||| || |||||| |||||||||||| ||||||    
T  12183315 ccaagacccaagtcttatttttaataagagcatcaaattc 12183354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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