View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7045_low_8 (Length: 360)
Name: NF7045_low_8
Description: NF7045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7045_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 344
Target Start/End: Complemental strand, 40943433 - 40943107
Alignment:
| Q |
18 |
aatacctgatgagttctttctgcaaagcaccaccttgtttggtacggcggtgtgaggtggcgccgaatccggtggtgacaccgtaactgtctgttccttt |
117 |
Q |
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| T |
40943433 |
aatacctgatgagttctttctgcaaagcaccaccttgtttggtacggcggtgtgaggtggcgccgaatccggtggtgacaccgtaactgtctgttccttt |
40943334 |
T |
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| Q |
118 |
gttcatactctccatcacccaatcactgctggcctcaacaccagccctagcagattctgacagctccacctgcacaccatggtcatgtgcagcaatggca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40943333 |
gttcatactctccatcacccaatcactgctggcctcaacaccagccctagcagattctgacagctccacctgcacaccatggtcatgtgcagcaatggca |
40943234 |
T |
|
| Q |
218 |
gccacctgagaaatggtcagtgtttcgccaccaagacggaccaccggcttccggtactcctccaccatacgcttcacctcatcaaggtgactgcctttca |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| | |||||||||||||| |
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| T |
40943233 |
gccacctgagaaatggtcagtgtttcgccaccaagacggaccaccggcttccggtactcctccaccatacgtttcacttcatccaagtgactgcctttca |
40943134 |
T |
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| Q |
318 |
ttgcctcagctgccacaccccaattca |
344 |
Q |
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|||| |||||||||||||||||||||| |
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| T |
40943133 |
ttgcttcagctgccacaccccaattca |
40943107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 20 - 344
Target Start/End: Complemental strand, 40956750 - 40956426
Alignment:
| Q |
20 |
tacctgatgagttctttctgcaaagcaccaccttgtttggtacggcggtgtgaggtggcgccgaatccggtggtgacaccgtaactgtctgttcctttgt |
119 |
Q |
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| T |
40956750 |
tacctgatgagttctttctgcaaagcaccaccttgtttggtacggcggtgtgaggtggcgccgaatccggtggtgacaccgtaactgtctgttcctttgt |
40956651 |
T |
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| Q |
120 |
tcatactctccatcacccaatcactgctggcctcaacaccagccctagcagattctgacagctccacctgcacaccatggtcatgtgcagcaatggcagc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40956650 |
tcatactctccatcacccaatcactgctggcctcaacaccagccctagcagattctgacagctccacctgcacaccatggtcatgtgcagcaatggcagc |
40956551 |
T |
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| Q |
220 |
cacctgagaaatggtcagtgtttcgccaccaagacggaccaccggcttccggtactcctccaccatacgcttcacctcatcaaggtgactgcctttcatt |
319 |
Q |
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| T |
40956550 |
cacctgagaaatggtcagtgtttcgccaccaagacggaccaccggcttccggtactcctccaccatacgtttcacttcatctatgtgactgcctttcatt |
40956451 |
T |
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| Q |
320 |
gcctcagctgccacaccccaattca |
344 |
Q |
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|| |||||||||||||||||||||| |
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| T |
40956450 |
gcttcagctgccacaccccaattca |
40956426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 40970235 - 40970202
Alignment:
| Q |
311 |
cctttcattgcctcagctgccacaccccaattca |
344 |
Q |
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||||||||||| |||||||||||||||||||||| |
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| T |
40970235 |
cctttcattgcttcagctgccacaccccaattca |
40970202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 35 - 300
Target Start/End: Original strand, 28187380 - 28187645
Alignment:
| Q |
35 |
ttctgcaaagcaccaccttgtttggtacggcggtgtgaggtggcgccgaatccggtggtgacaccgtaactgtctgttcctttgttcatactctccatca |
134 |
Q |
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|||||||| |||||||||||||| || | ||||| || || || || || |||||||| ||||| |||||||| || ||||| |||||||| ||||||| |
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| T |
28187380 |
ttctgcaaggcaccaccttgtttagttctccggtgagaagtagcaccaaaaccggtggtaacaccataactgtccgtacctttattcatactatccatca |
28187479 |
T |
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| Q |
135 |
cccaatcactgctggcctcaacaccagccctagcagattctgacagctccacctgcacaccatggtcatgtgcagcaatggcagccacctgagaaatggt |
234 |
Q |
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| T |
28187480 |
cccagtcactacttgccttaacaccggcccttgccgactccgaaagctccaccctaacaccactatcatgggaagcaattccagccacctgagcaatggt |
28187579 |
T |
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| Q |
235 |
cagtgtttcgccaccaagacggaccaccggcttccggtactcctccaccatacgcttcacctcatc |
300 |
Q |
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||||| || || || | |||| ||| || || ||||||||||||||||||||||||||||| |
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| T |
28187580 |
aagtgtctcaccgccgattttaaccaacgggttacgatactcctccaccatacgcttcacctcatc |
28187645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 318
Target Start/End: Original strand, 42615167 - 42615225
Alignment:
| Q |
260 |
accggcttccggtactcctccaccatacgcttcacctcatcaaggtgactgcctttcat |
318 |
Q |
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||||| |||||||| ||||| |||||||||||||||||||| |||||||| || ||||| |
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| T |
42615167 |
accggtttccggtattcctctaccatacgcttcacctcatctaggtgactacccttcat |
42615225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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