View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7045_low_9 (Length: 336)

Name: NF7045_low_9
Description: NF7045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7045_low_9
NF7045_low_9
[»] chr7 (3 HSPs)
chr7 (62-231)||(4285394-4285563)
chr7 (63-231)||(13823672-13823840)
chr7 (292-336)||(4285289-4285333)
[»] chr5 (2 HSPs)
chr5 (26-231)||(23614019-23614225)
chr5 (26-231)||(23845415-23845621)
[»] chr1 (4 HSPs)
chr1 (63-231)||(22120600-22120768)
chr1 (63-231)||(24643041-24643207)
chr1 (62-100)||(23830733-23830771)
chr1 (62-100)||(26078296-26078334)
[»] chr8 (5 HSPs)
chr8 (63-231)||(18765269-18765437)
chr8 (63-231)||(27892522-27892690)
chr8 (63-231)||(27904761-27904929)
chr8 (63-231)||(27951180-27951348)
chr8 (63-231)||(22927108-22927276)
[»] chr6 (2 HSPs)
chr6 (63-231)||(24951881-24952049)
chr6 (62-100)||(7400830-7400868)
[»] scaffold0181 (2 HSPs)
scaffold0181 (63-102)||(1482-1521)
scaffold0181 (63-102)||(5354-5393)
[»] chr4 (3 HSPs)
chr4 (62-100)||(17556069-17556107)
chr4 (62-100)||(22333306-22333344)
chr4 (62-100)||(52473731-52473769)
[»] chr2 (2 HSPs)
chr2 (14-97)||(38847844-38847928)
chr2 (62-100)||(23744990-23745028)


Alignment Details
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 62 - 231
Target Start/End: Complemental strand, 4285563 - 4285394
Alignment:
Q  62 tcactccctaaccactgtcagtaacagaacagcatgccaaaggctctagtccaaaaagtaaatcaaagaaaaacattccaaaaatctaagataacgagac 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4285563 tcactccctaaccactgtcagtaacagaacagcatgccaaaggctccagtccaaaaagtaaatcaaagaaaaacattccaaaaatctaagataacgagac 4285464  T
Q  162 ctacatatacaataaagcagccaacctaaaaaatctgctaacacacacctctctatcagccaaagccttt 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4285463 ctacatatacaataaagcagccaacctaaaaaatctgctaacacacgcctctctatcagccaaagccttt 4285394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 63 - 231
Target Start/End: Complemental strand, 13823840 - 13823672
Alignment:
Q  63 cactccctaaccactgtcagtaacagaacagcatgccaaaggctctagtccaaaaagtaaatcaaagaaaaacattccaaaaatctaagataacgagacc 162  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13823840 cactccctaaccactgtcagtaatagaacagcatgccaaaggctccaatccaaaaagtaaatcaaagaaaaacattccaaaaatctaagataatgagacc 13823741  T
Q  163 tacatatacaataaagcagccaacctaaaaaatctgctaacacacacctctctatcagccaaagccttt 231  Q
    |||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||    
T  13823740 tacatatacaataaagcagccaacctaagaaatctactaacacacgcctctctatcagccaaagccttt 13823672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 4285333 - 4285289
Alignment:
Q  292 gctgggcaaaaagcaagaatcgacatcatcacatacatcagaatc 336  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||    
T  4285333 gctgggcaaaaagaaagaatcgacatcatcacatacttcagaatc 4285289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 26 - 231
Target Start/End: Complemental strand, 23614225 - 23614019
Alignment:
Q  26 aaaagccacatacagaaa-tggatcacctnnnnnnnntcactccctaaccactgtcagtaacagaacagcatgccaaaggctctagtccaaaaagtaaat 124  Q
    |||||||||||||||||| ||||||||||         |||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||    
T  23614225 aaaagccacatacagaaaatggatcacctaaaaaaaaacactccctaaccactgccagtaacagaacagcatgccaaaggctccaatccaaaaagtaaat 23614126  T
Q  125 caaagaaaaacattccaaaaatctaagataacgagacctacatatacaataaagcagccaacctaaaaaatctgctaacacacacctctctatcagccaa 224  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  23614125 caaagaaaaacattccaaaaatctaagataatgagacctacatatacaataaagcagccaacctaagaaatctgctaacacacgcctctctatcagccaa 23614026  T
Q  225 agccttt 231  Q
    |||||||    
T  23614025 agccttt 23614019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 26 - 231
Target Start/End: Complemental strand, 23845621 - 23845415
Alignment:
Q  26 aaaagccacatacagaaa-tggatcacctnnnnnnnntcactccctaaccactgtcagtaacagaacagcatgccaaaggctctagtccaaaaagtaaat 124  Q
    |||||||||||||||||| ||||||||||         |||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||    
T  23845621 aaaagccacatacagaaaatggatcacctaaaaaaaaacactccctaaccactgccagtaacagaacagcatgccaaaggctccaatccaaaaagtaaat 23845522  T
Q  125 caaagaaaaacattccaaaaatctaagataacgagacctacatatacaataaagcagccaacctaaaaaatctgctaacacacacctctctatcagccaa 224  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  23845521 caaagaaaaacattccaaaaatctaagataatgagacctacatatacaataaagcagccaacctaagaaatctgctaacacacgcctctctatcagccaa 23845422  T
Q  225 agccttt 231  Q
    |||||||    
T  23845421 agccttt 23845415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 145; Significance: 3e-76; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 63 - 231
Target Start/End: Complemental strand, 22120768 - 22120600
Alignment:
Q  63 cactccctaaccactgtcagtaacagaacagcatgccaaaggctctagtccaaaaagtaaatcaaagaaaaacattccaaaaatctaagataacgagacc 162  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22120768 cactccctaaccaatgtcagtaacagaacagcatgccaaaggctccaatccaaaaagtaaatcaaagaaaaacattccaaaaatctaagataatgagacc 22120669  T
Q  163 tacatatacaataaagcagccaacctaaaaaatctgctaacacacacctctctatcagccaaagccttt 231  Q
    |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  22120668 tacatatacaataaagcagccaacctaagaaatctgctaacacacgcctctctatcagccaaagccttt 22120600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 63 - 231
Target Start/End: Complemental strand, 24643207 - 24643041
Alignment:
Q  63 cactccctaaccactgtcagtaacagaacagcatgccaaaggctctagtccaaaaagtaaatcaaagaaaaacattccaaaaatctaagataacgagacc 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||   |||||||||||||||||||||||||||||||| ||||||    
T  24643207 cactccctaaccactgtcagtaacagaacagcatgccaaaggctccaatccaaaaagtt--tcaaagaaaaacattccaaaaatctaagataatgagacc 24643110  T
Q  163 tacatatacaataaagcagccaacctaaaaaatctgctaacacacacctctctatcagccaaagccttt 231  Q
    |||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||    
T  24643109 tacatatacaataaagcagccaacctaagaaatctgctaacacacgcctcactatcagccaaagccttt 24643041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 100
Target Start/End: Original strand, 23830733 - 23830771
Alignment:
Q  62 tcactccctaaccactgtcagtaacagaacagcatgcca 100  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  23830733 tcactccctaaccactgtcaataacagaacagcatgcca 23830771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 100
Target Start/End: Original strand, 26078296 - 26078334
Alignment:
Q  62 tcactccctaaccactgtcagtaacagaacagcatgcca 100  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  26078296 tcactccctaaccactgtcaataacagaacagcatgcca 26078334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 133; Significance: 4e-69; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 63 - 231
Target Start/End: Complemental strand, 18765437 - 18765269
Alignment:
Q  63 cactccctaaccactgtcagtaacagaacagcatgccaaaggctctagtccaaaaagtaaatcaaagaaaaacattccaaaaatctaagataacgagacc 162  Q
    |||||||| |||||||| |||||||||||| |||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  18765437 cactccctgaccactgtgagtaacagaacaacatgccaaaggctccaatccaaaaagtaaatcaaagaaaaactttccaaaaatctaagataatgagacc 18765338  T
Q  163 tacatatacaataaagcagccaacctaaaaaatctgctaacacacacctctctatcagccaaagccttt 231  Q
    |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  18765337 tacatatacaataaagcagccaacctaagaaatctgctaacacacgcctctctatcagccaaagccttt 18765269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 63 - 231
Target Start/End: Original strand, 27892522 - 27892690
Alignment:
Q  63 cactccctaaccactgtcagtaacagaacagcatgccaaaggctctagtccaaaaagtaaatcaaagaaaaacattccaaaaatctaagataacgagacc 162  Q
    ||||||||||||| ||||||||||| || |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27892522 cactccctaaccaatgtcagtaacaaaatagcatgccaaaggctccaatccaaaaagtaaatcaaagaaaaacattccaaaaatctaagataaagagacc 27892621  T
Q  163 tacatatacaataaagcagccaacctaaaaaatctgctaacacacacctctctatcagccaaagccttt 231  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||    
T  27892622 tacatatacaataaagcagccaacctaaaaaatctgctaacgcacgcctctctatcagcccaagccttt 27892690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 63 - 231
Target Start/End: Original strand, 27904761 - 27904929
Alignment:
Q  63 cactccctaaccactgtcagtaacagaacagcatgccaaaggctctagtccaaaaagtaaatcaaagaaaaacattccaaaaatctaagataacgagacc 162  Q
    ||||||||||||| ||||||||||| || |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27904761 cactccctaaccaatgtcagtaacaaaatagcatgccaaaggctccaatccaaaaagtaaatcaaagaaaaacattccaaaaatctaagataaagagacc 27904860  T
Q  163 tacatatacaataaagcagccaacctaaaaaatctgctaacacacacctctctatcagccaaagccttt 231  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||    
T  27904861 tacatatacaataaagcagccaacctaaaaaatctgctaacgcacgcctctctatcagcccaagccttt 27904929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 63 - 231
Target Start/End: Original strand, 27951180 - 27951348
Alignment:
Q  63 cactccctaaccactgtcagtaacagaacagcatgccaaaggctctagtccaaaaagtaaatcaaagaaaaacattccaaaaatctaagataacgagacc 162  Q
    ||||||||||||| ||||||||||| || |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27951180 cactccctaaccaatgtcagtaacaaaatagcatgccaaaggctccaatccaaaaagtaaatcaaagaaaaacattccaaaaatctaagataaagagacc 27951279  T
Q  163 tacatatacaataaagcagccaacctaaaaaatctgctaacacacacctctctatcagccaaagccttt 231  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||    
T  27951280 tacatatacaataaagcagccaacctaaaaaatctgctaacgcacgcctctctatcagcccaagccttt 27951348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 63 - 231
Target Start/End: Original strand, 22927108 - 22927276
Alignment:
Q  63 cactccctaaccactgtcagtaacagaacagcatgccaaaggctctagtccaaaaagtaaatcaaagaaaaacattccaaaaatctaagataacgagacc 162  Q
    |||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  22927108 cactccctaaccactgtcagtaacagaacagcatgccaaatgctccaatccaaaaagtaaatcaaagaaaaacatttcaaaaatctaagataaagagacc 22927207  T
Q  163 tacatatacaataaagcagccaacctaaaaaatctgctaacacacacctctctatcagccaaagccttt 231  Q
    |||||||||||||||||||||||||||| |||| ||||||||||  |||| ||||||| ||||||||||    
T  22927208 tacatatacaataaagcagccaacctaagaaatatgctaacacatgcctcactatcaggcaaagccttt 22927276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 63 - 231
Target Start/End: Original strand, 24951881 - 24952049
Alignment:
Q  63 cactccctaaccactgtcagtaacagaacagcatgccaaaggctctagtccaaaaagtaaatcaaagaaaaacattccaaaaatctaagataacgagacc 162  Q
    |||||||||| ||||||||||||||||||||||||||||||| || | ||||||||  ||||||||||||||||||||||||||||||||||| ||||||    
T  24951881 cactccctaaacactgtcagtaacagaacagcatgccaaaggttccaatccaaaaaacaaatcaaagaaaaacattccaaaaatctaagataatgagacc 24951980  T
Q  163 tacatatacaataaagcagccaacctaaaaaatctgctaacacacacctctctatcagccaaagccttt 231  Q
    |||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||| ||||    
T  24951981 tacatatacaataaagcagccaccctaagaaatctgctaacacacgcctctctatcagccaaagtcttt 24952049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 100
Target Start/End: Original strand, 7400830 - 7400868
Alignment:
Q  62 tcactccctaaccactgtcagtaacagaacagcatgcca 100  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  7400830 tcactccctaaccactgtcagtaacaaaacagcatgcca 7400868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 102
Target Start/End: Complemental strand, 1521 - 1482
Alignment:
Q  63 cactccctaaccactgtcagtaacagaacagcatgccaaa 102  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1521 cactccctaaccactgtcagtaacagaacagcatgccaaa 1482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 102
Target Start/End: Complemental strand, 5393 - 5354
Alignment:
Q  63 cactccctaaccactgtcagtaacagaacagcatgccaaa 102  Q
    ||||||||||||||||||| |||||||| |||||||||||    
T  5393 cactccctaaccactgtcaataacagaatagcatgccaaa 5354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 100
Target Start/End: Original strand, 17556069 - 17556107
Alignment:
Q  62 tcactccctaaccactgtcagtaacagaacagcatgcca 100  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  17556069 tcactccctaaccactgtcagtaacaaaacagcatgcca 17556107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 100
Target Start/End: Complemental strand, 22333344 - 22333306
Alignment:
Q  62 tcactccctaaccactgtcagtaacagaacagcatgcca 100  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  22333344 tcactccctaaccattgtcagtaacagaacagcatgcca 22333306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 100
Target Start/End: Original strand, 52473731 - 52473769
Alignment:
Q  62 tcactccctaaccactgtcagtaacagaacagcatgcca 100  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  52473731 tcactccctaaccactgtcaataacagaacagcatgcca 52473769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 97
Target Start/End: Original strand, 38847844 - 38847928
Alignment:
Q  14 gacatcaaaaca-aaaagccacatacagaaa-tggatcacctnnnnnnnntcactccctaaccactgtcagtaacagaacagcatg 97  Q
    |||| ||||||| |||||||||||||||||| ||||||||||        |||||||||||||||||||||||||| |||||||||    
T  38847844 gacaccaaaacagaaaagccacatacagaaaatggatcacctaaaaaac-tcactccctaaccactgtcagtaacaaaacagcatg 38847928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 100
Target Start/End: Complemental strand, 23745028 - 23744990
Alignment:
Q  62 tcactccctaaccactgtcagtaacagaacagcatgcca 100  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  23745028 tcactccctaaccactgtcagtaactaaacagcatgcca 23744990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University