View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7046_high_1 (Length: 384)

Name: NF7046_high_1
Description: NF7046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7046_high_1
NF7046_high_1
[»] chr2 (6 HSPs)
chr2 (212-365)||(13043664-13043817)
chr2 (223-363)||(29081115-29081254)
chr2 (55-123)||(13043507-13043575)
chr2 (61-119)||(29081361-29081419)
chr2 (58-113)||(14811616-14811671)
chr2 (58-111)||(14314070-14314123)
[»] chr4 (3 HSPs)
chr4 (218-350)||(26261246-26261376)
chr4 (55-122)||(26261509-26261583)
chr4 (58-111)||(54260467-54260520)
[»] chr8 (8 HSPs)
chr8 (212-358)||(44718416-44718561)
chr8 (264-363)||(3046577-3046675)
chr8 (57-115)||(44718250-44718308)
chr8 (58-118)||(3046454-3046514)
chr8 (58-111)||(10861490-10861543)
chr8 (58-111)||(34964431-34964484)
chr8 (58-111)||(17068517-17068570)
chr8 (58-111)||(17579703-17579756)
[»] chr5 (6 HSPs)
chr5 (264-363)||(6665871-6665969)
chr5 (274-363)||(32659083-32659171)
chr5 (58-118)||(6666032-6666092)
chr5 (264-363)||(8871443-8871541)
chr5 (58-111)||(8871586-8871639)
chr5 (58-94)||(32659269-32659305)
[»] chr7 (9 HSPs)
chr7 (57-115)||(26244663-26244721)
chr7 (265-358)||(45280951-45281044)
chr7 (58-122)||(22293194-22293258)
chr7 (63-119)||(15042922-15042978)
chr7 (250-350)||(26244870-26244970)
chr7 (264-365)||(22205112-22205212)
chr7 (264-365)||(22229527-22229627)
chr7 (58-118)||(22205005-22205065)
chr7 (58-118)||(22229674-22229734)
[»] chr6 (4 HSPs)
chr6 (218-290)||(9150059-9150131)
chr6 (56-115)||(9149881-9149939)
chr6 (58-111)||(8862372-8862425)
chr6 (271-363)||(21112287-21112378)
[»] chr3 (10 HSPs)
chr3 (264-363)||(22976562-22976659)
chr3 (58-111)||(21869196-21869249)
chr3 (271-363)||(959034-959125)
chr3 (58-118)||(22976439-22976499)
chr3 (271-363)||(25041537-25041629)
chr3 (55-103)||(41530368-41530416)
chr3 (264-363)||(42864469-42864567)
chr3 (58-111)||(25041681-25041734)
chr3 (58-111)||(39580235-39580288)
chr3 (308-363)||(29359931-29359984)
[»] chr1 (5 HSPs)
chr1 (271-363)||(33368977-33369067)
chr1 (63-107)||(22150348-22150392)
chr1 (58-122)||(33369129-33369192)
chr1 (59-118)||(23205859-23205918)
chr1 (223-267)||(29096476-29096520)


Alignment Details
Target: chr2 (Bit Score: 138; Significance: 5e-72; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 212 - 365
Target Start/End: Original strand, 13043664 - 13043817
Alignment:
Q  212 ttctttggagttgttgatggagacaattaatgatgctaatgttgagattgggtcaattggtggtaatggttagaaaagggaataactatctcttagtggt 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||    
T  13043664 ttctttggagttgttgatggagacaattaatgatgctaatgttgagattgggtcaattggtgataatggttagaaaagggaataactatcgcttagcggt 13043763  T
Q  312 gacgaggaactctagtttttgggggttagaagagacaatatgtttttcatagtg 365  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13043764 gacgaggaaccctagtttttgggggttagaagagacaatatgtttttcatagtg 13043817  T

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Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 223 - 363
Target Start/End: Complemental strand, 29081254 - 29081115
Alignment:
Q  223 tgttgatggagacaattaatgatgctaatgttgagattgggtcaattggtggtaatggttagaaaagggaataactatctcttagtggtgacgaggaact 322  Q
    ||||||||||| |||| ||||||| | ||||||||||||||||||| ||||||||||||||||| |||||||||||||  ||  |||||||||||||||     
T  29081254 tgttgatggaggcaatcaatgatgttgatgttgagattgggtcaatcggtggtaatggttagaagagggaataactattgctcggtggtgacgaggaacc 29081155  T
Q  323 ctagtttttgggggttagaagagacaatatgtttttcatag 363  Q
    ||| ||||  ||| |||||||||||||||||||||||||||    
T  29081154 cta-ttttctgggattagaagagacaatatgtttttcatag 29081115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 55 - 123
Target Start/End: Original strand, 13043507 - 13043575
Alignment:
Q  55 tcattgtctaatgttgaccacttaatacttaacactaattgacattgaaaacaaacaattttttcccat 123  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  13043507 tcattgtctaatgttgaccacttaatacttaacactaattgagattgaaaacaaacaattttttcccat 13043575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 29081419 - 29081361
Alignment:
Q  61 tctaatgttgaccacttaatacttaacactaattgacattgaaaacaaacaattttttc 119  Q
    |||| |||||||||||| |||||||| ||||||||| ||||||||||||||||||||||    
T  29081419 tctagtgttgaccacttgatacttaatactaattgaaattgaaaacaaacaattttttc 29081361  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 14811671 - 14811616
Alignment:
Q  58 ttgtctaatgttgaccacttaatacttaacactaattgacattgaaaacaaacaat 113  Q
    ||||||||||||||| |||||| | |||||||||||| | || |||||||||||||    
T  14811671 ttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaacaat 14811616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 14314070 - 14314123
Alignment:
Q  58 ttgtctaatgttgaccacttaatacttaacactaattgacattgaaaacaaaca 111  Q
    ||||||||||||||| |||||| | |||||||||||| | || |||||||||||    
T  14314070 ttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaaca 14314123  T

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Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 218 - 350
Target Start/End: Complemental strand, 26261376 - 26261246
Alignment:
Q  218 ggagttgttgatggagacaattaatgatgctaatgttgagattgggtcaattggtggtaatggttagaaaagggaataactatctcttagtggtgacgag 317  Q
    |||| ||||||||||| |||| | ||||||  |||||||||||| | |||||||||||||||||||||| |||||||| ||||  ||  |||||||||||    
T  26261376 ggaggtgttgatggaggcaatcagtgatgcagatgttgagattgaggcaattggtggtaatggttagaagagggaatagctatagctcggtggtgacgag 26261277  T
Q  318 gaactctagtttttgggggttagaagagacaat 350  Q
     |||||||  |||| ||||||||||||||||||    
T  26261276 aaactcta--tttttggggttagaagagacaat 26261246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 55 - 122
Target Start/End: Complemental strand, 26261583 - 26261509
Alignment:
Q  55 tcattgtctaatgttgaccacttaatacttaaca-------ctaattgacattgaaaacaaacaattttttccca 122  Q
    |||||||||||||||||| |||||||| ||||||       |||||||| |||||||||||||||||||||||||    
T  26261583 tcattgtctaatgttgactacttaataattaacagttaacactaattgagattgaaaacaaacaattttttccca 26261509  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 54260520 - 54260467
Alignment:
Q  58 ttgtctaatgttgaccacttaatacttaacactaattgacattgaaaacaaaca 111  Q
    ||||||||||||||| |||||||| |||||||||||| | || |||||||||||    
T  54260520 ttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaaca 54260467  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 212 - 358
Target Start/End: Original strand, 44718416 - 44718561
Alignment:
Q  212 ttctttggagttgttgatggagacaattaatgatgctaatgttgagattgggtcaattggtggtaatggttagaaaagggaataactatctcttagtgg- 310  Q
    |||| ||||| ||||||||||| |||| | ||||||| |||||||||||  || ||||| |||||| |||||||| ||| ||||||||||  | |||||     
T  44718416 ttctctggaggtgttgatggaggcaatcattgatgctgatgttgagattcagttaattgatggtaaaggttagaagaggaaataactatcgttcagtggt 44718515  T
Q  311 tgacgaggaactctagtttttgggggttagaagagacaatatgttttt 358  Q
    |||| |||||| ||| ||||| ||||||||||||||||| ||||||||    
T  44718516 tgacaaggaacccta-ttttttggggttagaagagacaa-atgttttt 44718561  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 264 - 363
Target Start/End: Original strand, 3046577 - 3046675
Alignment:
Q  264 tcaattggtggtaatggttagaaaagggaataactatctcttagtggtgacgaggaactctagtttttgggggttagaagagacaatatgtttttcatag 363  Q
    ||||||||||||||||||||||| ||||||||  ||||  |  ||||||||||| ||| ||| |||||  ||||||||||||||||||||||||| ||||    
T  3046577 tcaattggtggtaatggttagaagagggaatagttatcgttatgtggtgacgagaaacccta-tttttttgggttagaagagacaatatgtttttgatag 3046675  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 44718250 - 44718308
Alignment:
Q  57 attgtctaatgttgaccacttaatacttaacactaattgacattgaaaacaaacaattt 115  Q
    |||||||||||||||| |||||||| ||||||||| |||| ||||||||||| ||||||    
T  44718250 attgtctaatgttgactacttaatagttaacactatttgaaattgaaaacaatcaattt 44718308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 3046454 - 3046514
Alignment:
Q  58 ttgtctaatgttgaccacttaatacttaacactaattgacattgaaaacaaacaatttttt 118  Q
    ||||||||||||||| |||||||| |||||||||||| | ||  |||||||||||||||||    
T  3046454 ttgtctaatgttgactacttaatatttaacactaatttatatcaaaaacaaacaatttttt 3046514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 10861490 - 10861543
Alignment:
Q  58 ttgtctaatgttgaccacttaatacttaacactaattgacattgaaaacaaaca 111  Q
    ||||||||||||||| |||||||| |||||||||||| | || |||||||||||    
T  10861490 ttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaaca 10861543  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 34964431 - 34964484
Alignment:
Q  58 ttgtctaatgttgaccacttaatacttaacactaattgacattgaaaacaaaca 111  Q
    ||||||||||||||| |||||| | |||||||||||| |||| |||||||||||    
T  34964431 ttgtctaatgttgactacttaacagttaacactaatttacatcgaaaacaaaca 34964484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 17068570 - 17068517
Alignment:
Q  58 ttgtctaatgttgaccacttaatacttaacactaattgacattgaaaacaaaca 111  Q
    ||||||||||||||| |||||| | |||||||||||| | || |||||||||||    
T  17068570 ttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaaca 17068517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 17579703 - 17579756
Alignment:
Q  58 ttgtctaatgttgaccacttaatacttaacactaattgacattgaaaacaaaca 111  Q
    ||||||||||||||| |||||| | |||||||||||| | || |||||||||||    
T  17579703 ttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaaca 17579756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 264 - 363
Target Start/End: Complemental strand, 6665969 - 6665871
Alignment:
Q  264 tcaattggtggtaatggttagaaaagggaataactatctcttagtggtgacgaggaactctagtttttgggggttagaagagacaatatgtttttcatag 363  Q
    ||||||||||||||||||||||| ||||||||  |||| ||  ||||||||||| ||| ||| |||||  ||||||||||||||||||||||||| ||||    
T  6665969 tcaattggtggtaatggttagaagagggaatagttatcgctatgtggtgacgagaaacccta-tttttttgggttagaagagacaatatgtttttgatag 6665871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 274 - 363
Target Start/End: Complemental strand, 32659171 - 32659083
Alignment:
Q  274 gtaatggttagaaaagggaataactatctcttagtggtgacgaggaactctagtttttgggggttagaagagacaatatgtttttcatag 363  Q
    ||||||| ||||| | |||||| ||||| ||  ||||||||||| ||| |||  |||||||| |||||||||||||||||||||| ||||    
T  32659171 gtaatgggtagaagatggaatagctatcgctatgtggtgacgagaaaccctatattttgggg-ttagaagagacaatatgtttttgatag 32659083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 6666092 - 6666032
Alignment:
Q  58 ttgtctaatgttgaccacttaatacttaacactaattgacattgaaaacaaacaatttttt 118  Q
    ||||||||||||||| ||||| || |||||||||||| | || ||||||||||| ||||||    
T  6666092 ttgtctaatgttgactacttactagttaacactaatttatatcgaaaacaaacagtttttt 6666032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 264 - 363
Target Start/End: Complemental strand, 8871541 - 8871443
Alignment:
Q  264 tcaattggtggtaatggttagaaaagggaataactatctcttagtggtgacgaggaactctagtttttgggggttagaagagacaatatgtttttcatag 363  Q
    |||||| |||||||||||||||| || ||||| ||||  ||  ||||||||||| ||| ||| |||||   ||||||||||||||||||| |||| ||||    
T  8871541 tcaattagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaacccta-tttttttaggttagaagagacaatatgattttgatag 8871443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 8871639 - 8871586
Alignment:
Q  58 ttgtctaatgttgaccacttaatacttaacactaattgacattgaaaacaaaca 111  Q
    ||||||||||||||| |||||| | |||||||||||| | || |||||||||||    
T  8871639 ttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaaca 8871586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 94
Target Start/End: Complemental strand, 32659305 - 32659269
Alignment:
Q  58 ttgtctaatgttgaccacttaatacttaacactaatt 94  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  32659305 ttgtctaatgttgactacttaatagttaacactaatt 32659269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 26244663 - 26244721
Alignment:
Q  57 attgtctaatgttgaccacttaatacttaacactaattgacattgaaaacaaacaattt 115  Q
    |||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||    
T  26244663 attgtctaatgttgactacttaataattaacactaattgagattgaaaacaaacaattt 26244721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 265 - 358
Target Start/End: Complemental strand, 45281044 - 45280951
Alignment:
Q  265 caattggtggtaatggttagaaaagggaataactatctcttagtggtgacgaggaactctagtttttgggggttagaagagacaatatgttttt 358  Q
    ||||||||| || ||||||||| |||||||||||||| ||  ||||||| ||| ||| ||| |||||  |||||||||||||||||||||||||    
T  45281044 caattggtgatattggttagaagagggaataactatcgctgtgtggtgatgagaaaccctattttttttgggttagaagagacaatatgttttt 45280951  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 122
Target Start/End: Complemental strand, 22293258 - 22293194
Alignment:
Q  58 ttgtctaatgttgaccacttaatacttaacactaattgacattgaaaacaaacaattttttccca 122  Q
    ||||||||||||||| |||||||| |||||||||||| | ||  |||||||||||||||||||||    
T  22293258 ttgtctaatgttgactacttaatagttaacactaatttagatcaaaaacaaacaattttttccca 22293194  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 15042922 - 15042978
Alignment:
Q  63 taatgttgaccacttaatacttaacactaattgacattgaaaacaaacaattttttc 119  Q
    |||||||||| |||||||| | || ||||||||| ||||||||||||||||||||||    
T  15042922 taatgttgactacttaataatgaatactaattgagattgaaaacaaacaattttttc 15042978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 250 - 350
Target Start/End: Original strand, 26244870 - 26244970
Alignment:
Q  250 atgttgagattgggtcaattggtggtaatggttagaaaagggaataactatctcttagtggtgacgaggaactctagtttttgggggttagaagagacaa 349  Q
    |||||||||||| | |||| |||||||||||| | || || ||||||| || | |||||||||| ||| ||| ||| ||||| |||||| ||||||||||    
T  26244870 atgttgagattgaggcaatcggtggtaatggtcaaaagagagaataacgatttgttagtggtgatgagaaaccctacttttttggggttggaagagacaa 26244969  T
Q  350 t 350  Q
    |    
T  26244970 t 26244970  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 365
Target Start/End: Original strand, 22205112 - 22205212
Alignment:
Q  264 tcaattggtggtaatggttagaaaagggaataactatctcttagtggtgacgaggaactctagtttttgggggttagaagagacaatatgtttttcatag 363  Q
    ||||| || |||||||||||||| |||||||| ||||| ||   |||||||||| ||| ||| |||||  ||| |||||||||||| |||||||| ||||    
T  22205112 tcaatcggcggtaatggttagaagagggaatagctatcgctatttggtgacgagaaacccta-tttttttgggatagaagagacaaaatgttttttatag 22205210  T
Q  364 tg 365  Q
    ||    
T  22205211 tg 22205212  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 365
Target Start/End: Complemental strand, 22229627 - 22229527
Alignment:
Q  264 tcaattggtggtaatggttagaaaagggaataactatctcttagtggtgacgaggaactctagtttttgggggttagaagagacaatatgtttttcatag 363  Q
    ||||| || |||||||||||||| |||||||| ||||| ||   |||||||||| ||| ||| |||||  ||| |||||||||||| |||||||| ||||    
T  22229627 tcaatcggcggtaatggttagaagagggaatagctatcgctatttggtgacgagaaacccta-tttttttgggatagaagagacaaaatgttttttatag 22229529  T
Q  364 tg 365  Q
    ||    
T  22229528 tg 22229527  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 22205005 - 22205065
Alignment:
Q  58 ttgtctaatgttgaccacttaatacttaacactaattgacattgaaaacaaacaatttttt 118  Q
    ||||||||||||||| || ||||| |||||||||||| | || ||||| ||||| ||||||    
T  22205005 ttgtctaatgttgactacctaatagttaacactaatttatatcgaaaagaaacagtttttt 22205065  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 22229734 - 22229674
Alignment:
Q  58 ttgtctaatgttgaccacttaatacttaacactaattgacattgaaaacaaacaatttttt 118  Q
    ||||||||||||||| || ||||| |||||||||||| | || ||||| ||||| ||||||    
T  22229734 ttgtctaatgttgactacctaatagttaacactaatttatatcgaaaagaaacagtttttt 22229674  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 218 - 290
Target Start/End: Original strand, 9150059 - 9150131
Alignment:
Q  218 ggagttgttgatggagacaattaatgatgctaatgttgagattgggtcaattggtggtaatggttagaaaagg 290  Q
    |||| ||||||||||| |||| | ||||||| ||||||||||||||||||| ||||||||||| |||||||||    
T  9150059 ggaggtgttgatggaggcaatcagtgatgctgatgttgagattgggtcaatcggtggtaatggatagaaaagg 9150131  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 56 - 115
Target Start/End: Original strand, 9149881 - 9149939
Alignment:
Q  56 cattgtctaatgttgaccacttaatacttaacactaattgacattgaaaacaaacaattt 115  Q
    |||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||    
T  9149881 cattgtctaatgttgaccacttaatactt-gcactaattgagattgaaaacaaacaattt 9149939  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 8862425 - 8862372
Alignment:
Q  58 ttgtctaatgttgaccacttaatacttaacactaattgacattgaaaacaaaca 111  Q
    |||||||||||||||||||||| | ||| |||||||| | || |||||||||||    
T  8862425 ttgtctaatgttgaccacttaacagttatcactaatttatatcgaaaacaaaca 8862372  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 363
Target Start/End: Complemental strand, 21112378 - 21112287
Alignment:
Q  271 gtggtaatggttagaaaagggaataactatctcttagtggtgacgaggaactctagtttttgggggttagaagagacaatatgtttttcatag 363  Q
    |||||||||||||||| || ||||| ||||  ||  ||||||||||| ||| ||| |||||  || ||||||||||||||||| |||| ||||    
T  21112378 gtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctatttttttagg-ttagaagagacaatatgattttgatag 21112287  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 264 - 363
Target Start/End: Original strand, 22976562 - 22976659
Alignment:
Q  264 tcaattggtggtaatggttagaaaagggaataactatctcttagtggtgacgaggaactctagtttttgggggttagaagagacaatatgtttttcatag 363  Q
    ||||| ||||||||||||||||| ||| |||| ||||| ||  ||||||||||| ||| ||| |||||  |||||| |||||||||||||||||| ||||    
T  22976562 tcaatcggtggtaatggttagaagaggaaatagctatcgctatgtggtgacgagaaaccctatttttt--gggttaaaagagacaatatgtttttgatag 22976659  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 21869249 - 21869196
Alignment:
Q  58 ttgtctaatgttgaccacttaatacttaacactaattgacattgaaaacaaaca 111  Q
    ||||||||||||||| |||||| | |||||||||||| | ||||||||||||||    
T  21869249 ttgtctaatgttgactacttaacagttaacactaatttatattgaaaacaaaca 21869196  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 363
Target Start/End: Complemental strand, 959125 - 959034
Alignment:
Q  271 gtggtaatggttagaaaagggaataactatctcttagtggtgacgaggaactctagtttttgggggttagaagagacaatatgtttttcatag 363  Q
    |||||||||||||||| || ||||| |||| |||  ||||||||||| ||| ||| |||||   ||||||||||||||||||| |||| ||||    
T  959125 gtggtaatggttagaagagagaatagctatttctatgtggtgacgagaaacccta-tttttttaggttagaagagacaatatgattttgatag 959034  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 22976439 - 22976499
Alignment:
Q  58 ttgtctaatgttgaccacttaatacttaacactaattgacattgaaaacaaacaatttttt 118  Q
    ||||||||||||||| |||||||| |||||||||||| | || ||||| ||||| ||||||    
T  22976439 ttgtctaatgttgactacttaatagttaacactaatttatatcgaaaataaacagtttttt 22976499  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 363
Target Start/End: Complemental strand, 25041629 - 25041537
Alignment:
Q  271 gtggtaatggttagaaaagggaataactatctcttagtggtgacgaggaactctagtttttgggggttagaagagacaatatgtttttcatag 363  Q
    ||||||||||||| ||||| ||||| ||||  ||  ||||||||||| ||| ||| |||||   ||||||||||||||||||| |||| ||||    
T  25041629 gtggtaatggttaaaaaagagaatagctattgctatgtggtgacgagaaaccctattttttttaggttagaagagacaatatgattttgatag 25041537  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 41530368 - 41530416
Alignment:
Q  55 tcattgtctaatgttgaccacttaatacttaacactaattgacattgaa 103  Q
    |||||||||||||||||| |||| ||| |||||||||||||| ||||||    
T  41530368 tcattgtctaatgttgactactttatagttaacactaattgagattgaa 41530416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 264 - 363
Target Start/End: Complemental strand, 42864567 - 42864469
Alignment:
Q  264 tcaattggtggtaatggttagaaaagggaataactatctcttagtggtgacgaggaactctagtttttgggggttagaagagacaatatgtttttcatag 363  Q
    |||||| |||||||||||||||| || ||||| ||||  ||  ||||||||||| ||| ||| |||||   ||||||||||||||||||| |||| ||||    
T  42864567 tcaattagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaacccta-tttttttaggttagaagagacaatatgattttgatag 42864469  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 25041734 - 25041681
Alignment:
Q  58 ttgtctaatgttgaccacttaatacttaacactaattgacattgaaaacaaaca 111  Q
    ||||||||||||||| |||||| | |||||||||||| | || |||||||||||    
T  25041734 ttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaaca 25041681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 39580288 - 39580235
Alignment:
Q  58 ttgtctaatgttgaccacttaatacttaacactaattgacattgaaaacaaaca 111  Q
    ||||||||||||||| |||||| | |||||||||||| | || |||||||||||    
T  39580288 ttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaaca 39580235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 363
Target Start/End: Complemental strand, 29359984 - 29359931
Alignment:
Q  308 tggtgacgaggaactctagtttttgggggttagaagagacaatatgtttttcatag 363  Q
    |||||||||| ||| ||| ||||||||  |||||||||||||||||||||| ||||    
T  29359984 tggtgacgagaaacactattttttggg--ttagaagagacaatatgtttttgatag 29359931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 363
Target Start/End: Complemental strand, 33369067 - 33368977
Alignment:
Q  271 gtggtaatggttagaaaagggaataactatctcttagtggtgacgaggaactctagtttttgggggttagaagagacaatatgtttttcatag 363  Q
    |||||||||||||||| |||||||| ||||| ||  ||||||||||| ||| | | |||||  ||||||||||||| ||||||||||| ||||    
T  33369067 gtggtaatggttagaagagggaatagctatcgctatgtggtgacgagaaacccaatttttt--gggttagaagagataatatgtttttgatag 33368977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 22150348 - 22150392
Alignment:
Q  63 taatgttgaccacttaatacttaacactaattgacattgaaaaca 107  Q
    |||||||||| |||||||| |||||||||||||| ||||||||||    
T  22150348 taatgttgactacttaataattaacactaattgagattgaaaaca 22150392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 122
Target Start/End: Complemental strand, 33369192 - 33369129
Alignment:
Q  58 ttgtctaatgttgaccacttaatacttaacactaattgacattgaaaacaaacaattttttccca 122  Q
    ||||||||||||||| |||||||| ||||||||| || | |||||||| || |||||||||||||    
T  33369192 ttgtctaatgttgactacttaatagttaacactattttagattgaaaa-aatcaattttttccca 33369129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 59 - 118
Target Start/End: Original strand, 23205859 - 23205918
Alignment:
Q  59 tgtctaatgttgaccacttaatacttaacactaattgacattgaaaacaaacaatttttt 118  Q
    |||||||| ||||  |||||||  |||||||||||||| ||||||||||| |||||||||    
T  23205859 tgtctaatattgataacttaatggttaacactaattgaaattgaaaacaaccaatttttt 23205918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 267
Target Start/End: Complemental strand, 29096520 - 29096476
Alignment:
Q  223 tgttgatggagacaattaatgatgctaatgttgagattgggtcaa 267  Q
    ||||||||||| |||| | ||||||| ||||||||||||||||||    
T  29096520 tgttgatggaggcaatcagtgatgctgatgttgagattgggtcaa 29096476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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