View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7047_high_3 (Length: 348)
Name: NF7047_high_3
Description: NF7047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7047_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 13307979 - 13308296
Alignment:
| Q |
1 |
atcctttatttatctgttaaaaattacctt---gttgcaaagttcaaacaatgtaattttttggcattnnnnnnngtaacatatcaatattggtaattat |
97 |
Q |
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| T |
13307979 |
atcctttatttatctgttaaaaattaccttaatgttgcaaagttcaaacaatgtaattttttggcatt------------------atattggtaattat |
13308060 |
T |
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| Q |
98 |
ttttcgaaaacatccttnnnnnnntcgaaatacaaaagcctatatatagatggactaatccctttgctatgtgcatcatacacaacataataccatggcc |
197 |
Q |
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| T |
13308061 |
ttttcgaaaacatccttaaaaaaatcgaaatacaaaagcctatatatagatggactaatccctttgctatatgcatcatacacaacataataccatggcc |
13308160 |
T |
|
| Q |
198 |
aactccataccaaaactccttgcaacacaaaaccccttctctgtttccctttcaatcnnnnnnnnnnnnnnnnnattaatcaacaacgtcaagtcggact |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
13308161 |
aactccataccaaaactccttgcaacacaaaaccccttctctgtttccctttcaatcttcttctttttacttttgttaatcaacaacgtcaagtcggact |
13308260 |
T |
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| Q |
298 |
cattatctttcaacttccccaaattcgatactgatg |
333 |
Q |
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| T |
13308261 |
cattatctttcaacttccccaaattcgataccgatg |
13308296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 131 - 249
Target Start/End: Original strand, 13333258 - 13333377
Alignment:
| Q |
131 |
aaaagcctatatatagatggactaatccctttgctatgtgcatcatacacaaca-taataccatggccaactccataccaaaactccttgcaacacaaaa |
229 |
Q |
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||||||||||||||||||||| ||| ||||||||| | |||||||| ||||||| || ||| ||||||||||| | ||||| ||||||| |||||||| |
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| T |
13333258 |
aaaagcctatatatagatggattaacccctttgctctttgcatcattcacaacactactacaatggccaactcaaacccaaagctccttgtgacacaaaa |
13333357 |
T |
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| Q |
230 |
ccccttctctgtttcccttt |
249 |
Q |
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|||||||||||||| ||||| |
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| T |
13333358 |
ccccttctctgttttccttt |
13333377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 322
Target Start/End: Original strand, 13333392 - 13333441
Alignment:
| Q |
273 |
ttaatcaacaacgtcaagtcggactcattatctttcaacttccccaaatt |
322 |
Q |
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||||||| ||| ||||| || |||||||| |||||||||||||||||||| |
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| T |
13333392 |
ttaatcaccaatgtcaaatcagactcattttctttcaacttccccaaatt |
13333441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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