View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7047_high_5 (Length: 248)
Name: NF7047_high_5
Description: NF7047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7047_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 5889926 - 5889706
Alignment:
| Q |
14 |
acaggttctgaacaagaaactttagatgatattgtgaacatgcataaggatggtggttttagtgatagttttttagataatcagatggatataacggctt |
113 |
Q |
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| T |
5889926 |
acagattctgaacaagaaactttagatgatattgtgaacatgcataaggatggtggttttagtgatagttttttagataatcagctggatctaacggctt |
5889827 |
T |
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| Q |
114 |
catcttctgaaacagaagagtttcagaatgatcacaaagaattaaaggtaaatctgcctcaaatcaagattcctgatgttgctgttggaggtgccgactc |
213 |
Q |
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| T |
5889826 |
catcttctgaaacagaagagtttcagaatgatcacaaagaactaaaggtaaatctgcctcaaatcaagattcctgatgttgctgttggaggtgccgactc |
5889727 |
T |
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| Q |
214 |
acctgcaagtgagaagaaaat |
234 |
Q |
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| T |
5889726 |
acctgcaagtgagaagaaaat |
5889706 |
T |
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