View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7047_low_2 (Length: 380)

Name: NF7047_low_2
Description: NF7047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7047_low_2
NF7047_low_2
[»] chr6 (53 HSPs)
chr6 (150-322)||(5157493-5157665)
chr6 (150-320)||(5066561-5066731)
chr6 (150-320)||(5425954-5426124)
chr6 (154-318)||(5128286-5128450)
chr6 (154-318)||(5370619-5370783)
chr6 (154-320)||(5096756-5096922)
chr6 (150-320)||(5350438-5350602)
chr6 (150-307)||(5176783-5176940)
chr6 (150-322)||(5354479-5354651)
chr6 (150-315)||(5073780-5073945)
chr6 (150-307)||(5278610-5278767)
chr6 (154-314)||(5102487-5102647)
chr6 (150-314)||(5434079-5434243)
chr6 (1-124)||(5434116-5434239)
chr6 (150-319)||(5396994-5397163)
chr6 (150-320)||(5181794-5181964)
chr6 (150-307)||(5690039-5690196)
chr6 (150-312)||(5447631-5447793)
chr6 (150-319)||(5284257-5284426)
chr6 (150-307)||(5344905-5345062)
chr6 (189-307)||(5243793-5243911)
chr6 (150-319)||(5383370-5383539)
chr6 (3-121)||(5176822-5176940)
chr6 (13-129)||(5066566-5066682)
chr6 (3-138)||(5073771-5073906)
chr6 (3-138)||(5181790-5181925)
chr6 (6-124)||(5102491-5102609)
chr6 (3-121)||(5243793-5243911)
chr6 (3-121)||(5278649-5278767)
chr6 (1-129)||(5157500-5157628)
chr6 (13-121)||(5344954-5345062)
chr6 (1-123)||(5128295-5128417)
chr6 (31-129)||(5354486-5354584)
chr6 (7-121)||(5690039-5690153)
chr6 (1-138)||(5425991-5426128)
chr6 (13-124)||(5350487-5350592)
chr6 (13-123)||(5370664-5370774)
chr6 (1-121)||(5397031-5397151)
chr6 (1-136)||(5096789-5096924)
chr6 (3-65)||(5284325-5284387)
chr6 (176-296)||(5281370-5281490)
chr6 (150-300)||(5257221-5257371)
chr6 (6-124)||(5447673-5447791)
chr6 (286-318)||(5137535-5137567)
chr6 (176-296)||(5179611-5179731)
chr6 (317-353)||(5350629-5350665)
chr6 (317-353)||(5370812-5370848)
chr6 (316-350)||(5066501-5066535)
chr6 (317-362)||(5102409-5102454)
chr6 (317-362)||(5128212-5128257)
chr6 (317-362)||(5137461-5137506)
chr6 (317-349)||(5157436-5157468)
chr6 (317-349)||(5426151-5426183)
[»] chr5 (9 HSPs)
chr5 (150-312)||(8877653-8877815)
chr5 (1-124)||(8877690-8877813)
chr5 (217-305)||(12599054-12599142)
chr5 (214-305)||(20838740-20838831)
chr5 (244-305)||(20812415-20812476)
chr5 (214-303)||(15803019-15803108)
chr5 (6-119)||(20838718-20838831)
chr5 (244-307)||(30417958-30418021)
chr5 (25-81)||(15803016-15803072)
[»] chr4 (28 HSPs)
chr4 (150-309)||(4344690-4344849)
chr4 (150-318)||(4123808-4123976)
chr4 (150-309)||(4361121-4361280)
chr4 (150-304)||(4320502-4320656)
chr4 (150-312)||(4335389-4335551)
chr4 (178-312)||(6498401-6498535)
chr4 (13-131)||(4344739-4344857)
chr4 (13-131)||(4361170-4361288)
chr4 (196-312)||(6675793-6675909)
chr4 (6-74)||(4335431-4335499)
chr4 (6-129)||(4123811-4123934)
chr4 (13-118)||(4320502-4320607)
chr4 (217-312)||(6588071-6588166)
chr4 (13-124)||(6675796-6675907)
chr4 (178-312)||(6545323-6545457)
chr4 (178-303)||(6621391-6621516)
chr4 (13-124)||(6498403-6498514)
chr4 (249-312)||(6728549-6728612)
chr4 (14-124)||(6758818-6758928)
chr4 (217-311)||(6822802-6822896)
chr4 (178-311)||(6753032-6753165)
chr4 (3-68)||(7885324-7885389)
chr4 (6-117)||(6651153-6651264)
chr4 (178-312)||(6815542-6815676)
chr4 (1-86)||(6822772-6822857)
chr4 (196-308)||(6532111-6532223)
chr4 (6-86)||(6753046-6753126)
chr4 (1-53)||(6815551-6815603)
[»] scaffold0294 (1 HSPs)
scaffold0294 (150-321)||(8766-8937)
[»] chr7 (4 HSPs)
chr7 (150-309)||(36213707-36213866)
chr7 (3-123)||(36213707-36213827)
chr7 (3-68)||(18935469-18935534)
chr7 (189-309)||(18935469-18935589)
[»] chr3 (6 HSPs)
chr3 (247-320)||(47986739-47986812)
chr3 (247-320)||(47996026-47996099)
chr3 (247-320)||(48005313-48005386)
chr3 (247-320)||(48014598-48014671)
chr3 (243-307)||(6905806-6905870)
chr3 (244-307)||(32411083-32411146)
[»] chr8 (13 HSPs)
chr8 (206-307)||(3391536-3391637)
chr8 (196-305)||(3262629-3262737)
chr8 (206-307)||(3364269-3364370)
chr8 (244-307)||(3407323-3407386)
chr8 (214-305)||(31175955-31176046)
chr8 (244-306)||(3286516-3286578)
chr8 (246-304)||(3314998-3315056)
chr8 (20-121)||(3391536-3391637)
chr8 (245-305)||(7164654-7164714)
chr8 (6-120)||(3286516-3286630)
chr8 (20-78)||(3364269-3364327)
chr8 (15-47)||(3262700-3262732)
chr8 (244-304)||(3325003-3325063)
[»] chr2 (2 HSPs)
chr2 (150-307)||(22584094-22584251)
chr2 (23-90)||(14766978-14767045)
[»] scaffold0468 (1 HSPs)
scaffold0468 (243-307)||(6146-6210)
[»] scaffold0286 (1 HSPs)
scaffold0286 (178-303)||(6731-6856)
[»] scaffold0813 (1 HSPs)
scaffold0813 (6-117)||(4710-4821)


Alignment Details
Target: chr6 (Bit Score: 129; Significance: 1e-66; HSPs: 53)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 150 - 322
Target Start/End: Complemental strand, 5157665 - 5157493
Alignment:
Q  150 atctttaaccactcagcttgcaaagaacactgcaataaaaagagtacccttttcagtagtgaggtcaaaaagcattggatacatctctttgtccggatat 249  Q
    |||||||||||||| ||||||| |  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||| |||    
T  5157665 atctttaaccactctgcttgcacacgacactgcaataaaaagagtacccttttcagtagtaaggtcaaaaagcattggatacatctctttgggcggctat 5157566  T
Q  250 gaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaacaaataatctcccatctc 322  Q
    ||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  5157565 gaaggattttctcgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcccatctc 5157493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 150 - 320
Target Start/End: Complemental strand, 5066731 - 5066561
Alignment:
Q  150 atctttaaccactcagcttgcaaagaacactgcaataaaaagagtacccttttcagtagtgaggtcaaaaagcattggatacatctctttgtccggatat 249  Q
    |||||||||||||| ||||||| | || ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||    
T  5066731 atctttaaccactctgcttgcacataaaactgcaataaaaagaatacccttttcagtagtaaggtcaaaaagcattggatacatctctttgtgcggctat 5066632  T
Q  250 gaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaacaaataatctcccatc 320  Q
    |||||||| || |||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||    
T  5066631 gaaggattctcgcgtgatgtgtttccatctatcattttgtcttggatgtcaccaacaaataatctcccatc 5066561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 150 - 320
Target Start/End: Original strand, 5425954 - 5426124
Alignment:
Q  150 atctttaaccactcagcttgcaaagaacactgcaataaaaagagtacccttttcagtagtgaggtcaaaaagcattggatacatctctttgtccggatat 249  Q
    |||||||||||||| | ||||| | || ||||||||||||||||||||||||||||| || | |||| |||||||||||||||||||||||| ||| |||    
T  5425954 atctttaaccactctgattgcacataaaactgcaataaaaagagtacccttttcagtggtaatgtcacaaagcattggatacatctctttgtgcggctat 5426053  T
Q  250 gaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaacaaataatctcccatc 320  Q
    ||||||||||||||||||||||||||| |  | ||||||||||||||||||||||||||||||||||||||    
T  5426054 gaaggattttcacgtgatgtgtttccagcgatcatttggtcttggatgtcaccaacaaataatctcccatc 5426124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 154 - 318
Target Start/End: Complemental strand, 5128450 - 5128286
Alignment:
Q  154 ttaaccactcagcttgcaaagaacactgcaataaaaagagtacccttttcagtagtgaggtcaaaaagcattggatacatctctttgtccggatatgaag 253  Q
    ||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||| |||  ||||||    
T  5128450 ttaacaactctgcttgcaaataacactgcaataaaaagagtacccttttcagtagtaaggtcaaaaagcattggatatatctctctgtgcggccatgaag 5128351  T
Q  254 gattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaacaaataatctccca 318  Q
    |||||||| ||||||||||||||||| | || |||||||||||||||||||||||| ||||||||    
T  5128350 gattttcaagtgatgtgtttccatctatcatctggtcttggatgtcaccaacaaatgatctccca 5128286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 154 - 318
Target Start/End: Original strand, 5370619 - 5370783
Alignment:
Q  154 ttaaccactcagcttgcaaagaacactgcaataaaaagagtacccttttcagtagtgaggtcaaaaagcattggatacatctctttgtccggatatgaag 253  Q
    |||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||| || ||||  ||  ||| ||    
T  5370619 ttaaccactctgcttgcaaataacactgcaataaaaagggtacccttttcagtagtacggtcaaaaagcattggatacatttcattgtgtggccatgtag 5370718  T
Q  254 gattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaacaaataatctccca 318  Q
    ||||||||| |||||| ||||||||| | ||||||||||||||||||||||||||| ||||||||    
T  5370719 gattttcacatgatgtttttccatctatcatttggtcttggatgtcaccaacaaattatctccca 5370783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 154 - 320
Target Start/End: Original strand, 5096756 - 5096922
Alignment:
Q  154 ttaaccactcagcttgcaaagaacactgcaataaaaagagtacccttttcagtagtgaggtcaaaaagcattggatacatctctttgtccggatatgaag 253  Q
    ||||||| || ||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| | |  ||  ||||||    
T  5096756 ttaaccattctgcttgcaaataacactggaataaaaagagtacccttttcagtagtaaggtcaaaaagcattggatacatttctctatgtggccatgaag 5096855  T
Q  254 gattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaacaaataatctcccatc 320  Q
    |||||||||||||||||||||| ||| | || ||||||||| |||||||||||||||||||| ||||    
T  5096856 gattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaataatctctcatc 5096922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 150 - 320
Target Start/End: Original strand, 5350438 - 5350602
Alignment:
Q  150 atctttaaccactcagcttgcaaagaacactgcaataaaaagagtacccttttcagtagtgaggtcaaaaagcattggatacatctctttgtccggatat 249  Q
    |||||||||||||| ||||||| | || ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||    
T  5350438 atctttaaccactctgcttgcacataaaactgcaataaaaagaatacccttttcagtagtaaggtcaaaaagcattggatacatctctttgtgcggctat 5350537  T
Q  250 gaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaacaaataatctcccatc 320  Q
    ||||||||||||||||||||||||  |||    |||   ||||||||||||||||||||||||| ||||||    
T  5350538 gaaggattttcacgtgatgtgttt--atc----attcattcttggatgtcaccaacaaataatcacccatc 5350602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 150 - 307
Target Start/End: Original strand, 5176783 - 5176940
Alignment:
Q  150 atctttaaccactcagcttgcaaagaacactgcaataaaaagagtacccttttcagtagtgaggtcaaaaagcattggatacatctctttgtccggatat 249  Q
    ||||||||| |||| ||||||||| ||||||||||||| |||||| ||||| ||| |||| ||||||||||||||||||||||||||||||| ||| |||    
T  5176783 atctttaactactctgcttgcaaataacactgcaataacaagagtgcccttgtcaatagtaaggtcaaaaagcattggatacatctctttgtgcggctat 5176882  T
Q  250 gaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaacaa 307  Q
    |||||||| ||||||||| | ||||||||  | |||||||||||||||||||||||||    
T  5176883 gaaggattctcacgtgatatatttccatcaatcatttggtcttggatgtcaccaacaa 5176940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 150 - 322
Target Start/End: Complemental strand, 5354651 - 5354479
Alignment:
Q  150 atctttaaccactcagcttgcaaagaacactgcaataaaaagagtacccttttcagtagtgaggtcaaaaagcattggatacatctctttgtccggatat 249  Q
    |||||||||||| | |||||||||  |||||||||||| |||||||||||| ||| |||| || || |||||||||||||| || ||||| |  || |||    
T  5354651 atctttaaccaccctgcttgcaaatgacactgcaataacaagagtacccttctcaatagttagttccaaaagcattggatatatttctttatgtggctat 5354552  T
Q  250 gaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaacaaataatctcccatctc 322  Q
    |||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||    
T  5354551 gaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctccgatctc 5354479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 150 - 315
Target Start/End: Complemental strand, 5073945 - 5073780
Alignment:
Q  150 atctttaaccactcagcttgcaaagaacactgcaataaaaagagtacccttttcagtagtgaggtcaaaaagcattggatacatctctttgtccggatat 249  Q
    |||||||||||||| | | ||||| ||||| ||||||| |||||| |||||||||||||| ||||| |||||||||||||| || ||||||| ||| |||    
T  5073945 atctttaaccactctgatagcaaataacaccgcaataacaagagtgcccttttcagtagtaaggtcgaaaagcattggatatatttctttgtgcggctat 5073846  T
Q  250 gaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaacaaataatctc 315  Q
    |||||||| |||||||||||||| |||||  | |||||||||||||||||||| ||||||||||||    
T  5073845 gaaggattctcacgtgatgtgttcccatcgatcatttggtcttggatgtcaccgacaaataatctc 5073780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 150 - 307
Target Start/End: Original strand, 5278610 - 5278767
Alignment:
Q  150 atctttaaccactcagcttgcaaagaacactgcaataaaaagagtacccttttcagtagtgaggtcaaaaagcattggatacatctctttgtccggatat 249  Q
    ||||||||| |||| ||||||||| ||||||||||||| |||||| ||||| ||  |||| ||||||||||||||||||||||||||||||| ||| |||    
T  5278610 atctttaactactctgcttgcaaataacactgcaataacaagagtgcccttgtctatagtaaggtcaaaaagcattggatacatctctttgtgcggctat 5278709  T
Q  250 gaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaacaa 307  Q
    |||||||| ||||||||| | ||||||||  | |||||||||||||||||||||||||    
T  5278710 gaaggattctcacgtgatatatttccatcaatcatttggtcttggatgtcaccaacaa 5278767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 154 - 314
Target Start/End: Complemental strand, 5102647 - 5102487
Alignment:
Q  154 ttaaccactcagcttgcaaagaacactgcaataaaaagagtacccttttcagtagtgaggtcaaaaagcattggatacatctctttgtccggatatgaag 253  Q
    ||||||||||  || ||||| ||||||||||||| || ||| |||||||||||||| |||||||||||||||||||| |||||| | |  || |||||||    
T  5102647 ttaaccactcttctagcaaacaacactgcaataacaacagtgcccttttcagtagtaaggtcaaaaagcattggatatatctctctatgtggctatgaag 5102548  T
Q  254 gattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaacaaataatct 314  Q
    || |||||| |||||||||||||||| | || |||||||||||||||||||||||||||||    
T  5102547 gactttcacatgatgtgtttccatctatcatctggtcttggatgtcaccaacaaataatct 5102487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 150 - 314
Target Start/End: Original strand, 5434079 - 5434243
Alignment:
Q  150 atctttaaccactcagcttgcaaagaacactgcaataaaaagagtacccttttcagtagtgaggtcaaaaagcattggatacatctctttgtccggatat 249  Q
    |||||||||||||| ||||||||| |||||||||||||||||||| ||  |||||||| |||| ||||||||||||||||| |||||||||| ||| |||    
T  5434079 atctttaaccactctgcttgcaaataacactgcaataaaaagagtgcctctttcagtactgagatcaaaaagcattggatatatctctttgtgcggttat 5434178  T
Q  250 gaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaacaaataatct 314  Q
    |||||||| ||||  ||| | ||||||| | | |||  |||||||||||||||||||||||||||    
T  5434179 gaaggattctcacacgatttatttccatttatcattcagtcttggatgtcaccaacaaataatct 5434243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 5434116 - 5434239
Alignment:
Q  1 aaaagagtgccgttttcagtagtaagatcaaaaagcattggatatatctctttgtgtggttatgaagggttctcacatgatatatttccacttatcattc 100  Q
    |||||||||||  |||||||| | |||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||| |||||||| |||||||||    
T  5434116 aaaagagtgcctctttcagtactgagatcaaaaagcattggatatatctctttgtgcggttatgaaggattctcacacgatttatttccatttatcattc 5434215  T
Q  101 agtcttgtatgtcaccaacaaata 124  Q
    ||||||| ||||||||||||||||    
T  5434216 agtcttggatgtcaccaacaaata 5434239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 150 - 319
Target Start/End: Original strand, 5396994 - 5397163
Alignment:
Q  150 atctttaaccactcagcttgcaaagaacactgcaataaaaagagtacccttttcagtagtgaggtcaaaaagcattggatacatctctttgtccggatat 249  Q
    ||||||||||||   | ||||||| |||||||||||||||||||| || |||||| |  | |||| ||||||||||||||  |||||||||| |||||||    
T  5396994 atctttaaccaccttggttgcaaataacactgcaataaaaagagtgccgttttcaattttaaggttaaaaagcattggatttatctctttgtgcggatat 5397093  T
Q  250 gaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaacaaataatctcccat 319  Q
    |||||||||||| |||| ||||||||| || | |||| |||||||||||||||||||| ||| |||||||    
T  5397094 gaaggattttcatgtgaagtgtttccagctatcatttcgtcttggatgtcaccaacaattaacctcccat 5397163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 150 - 320
Target Start/End: Complemental strand, 5181964 - 5181794
Alignment:
Q  150 atctttaaccactcagcttgcaaagaacactgcaataaaaagagtacccttttcagtagtgaggtcaaaaagcattggatacatctctttgtccggatat 249  Q
    ||||||||||||   | ||||||| ||||||||||||| |||||| || ||||||||||| | ||| |||||||||| ||| || || ||||  ||||||    
T  5181964 atctttaaccacattgattgcaaataacactgcaataacaagagtgccgttttcagtagtaaagtccaaaagcattgcatatatttccttgtgtggatat 5181865  T
Q  250 gaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaacaaataatctcccatc 320  Q
    |||||||| |||| ||||||||||||| |  | |||||||||||||||||||| |||||||||||||||||    
T  5181864 gaaggattctcacatgatgtgtttccagcgatcatttggtcttggatgtcaccgacaaataatctcccatc 5181794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 150 - 307
Target Start/End: Complemental strand, 5690196 - 5690039
Alignment:
Q  150 atctttaaccactcagcttgcaaagaacactgcaataaaaagagtacccttttcagtagtgaggtcaaaaagcattggatacatctctttgtccggatat 249  Q
    |||||||||||||| |||||||||  |||||| ||||| ||| || ||||||||| | || ||||||||||||||||| || || ||| ||| |||| ||    
T  5690196 atctttaaccactctgcttgcaaatgacactggaataacaagtgtgcccttttcaattgtaaggtcaaaaagcattgggtatatttctctgtgcggacat 5690097  T
Q  250 gaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaacaa 307  Q
    |||||||| ||||||||| | ||||||||| | |||||||||||||||||||||||||    
T  5690096 gaaggattctcacgtgatatatttccatctatcatttggtcttggatgtcaccaacaa 5690039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 150 - 312
Target Start/End: Original strand, 5447631 - 5447793
Alignment:
Q  150 atctttaaccactcagcttgcaaagaacactgcaataaaaagagtacccttttcagtagtgaggtcaaaaagcattggatacatctctttgtccggatat 249  Q
    |||||||||||||| ||||||||| || ||| |||||| || ||| |||||||| ||||| ||||| || ||||||||||| || ||||||| ||||| |    
T  5447631 atctttaaccactctgcttgcaaataatacttcaataacaacagtgcccttttcggtagttaggtcgaagagcattggatatatttctttgtgcggattt 5447730  T
Q  250 gaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaacaaataat 312  Q
    |||||||  || | |||||||||||||||| | ||| |||||||||||||||||| |||||||    
T  5447731 gaaggatcctcgcatgatgtgtttccatctattattcggtcttggatgtcaccaagaaataat 5447793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 150 - 319
Target Start/End: Complemental strand, 5284426 - 5284257
Alignment:
Q  150 atctttaaccactcagcttgcaaagaacactgcaataaaaagagtacccttttcagtagtgaggtcaaaaagcattggatacatctctttgtccggatat 249  Q
    |||||||||||||| | | || || ||||| ||||||| |||||| |||||||||||||| ||||| |||||||||||||| ||  |||||| ||| |||    
T  5284426 atctttaaccactctgatagctaataacaccgcaataacaagagtgcccttttcagtagtaaggtcgaaaagcattggatatattgctttgtgcggttat 5284327  T
Q  250 gaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaacaaataatctcccat 319  Q
    || ||| ||||| | |||||||||||||   |||||| ||| ||||||||| ||||||||||||||||||    
T  5284326 gagggactttcaagcgatgtgtttccattaataattttgtcatggatgtcagcaacaaataatctcccat 5284257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 150 - 307
Target Start/End: Original strand, 5344905 - 5345062
Alignment:
Q  150 atctttaaccactcagcttgcaaagaacactgcaataaaaagagtacccttttcagtagtgaggtcaaaaagcattggatacatctctttgtccggatat 249  Q
    ||||||||||| || | | ||||| ||||||||||||| || ||| ||||||| |||||| |||||||||||||||||||| || ||| |||  || |||    
T  5344905 atctttaaccattctgatcgcaaataacactgcaataacaaaagttccctttttagtagtaaggtcaaaaagcattggatatatttctctgtgtggctat 5345004  T
Q  250 gaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaacaa 307  Q
    |||||||| ||||| ||||| ||||||||| | || ||||||||||||||||||||||    
T  5345005 gaaggattctcacgcgatgtatttccatctatcatctggtcttggatgtcaccaacaa 5345062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 189 - 307
Target Start/End: Complemental strand, 5243911 - 5243793
Alignment:
Q  189 aagagtacccttttcagtagtgaggtcaaaaagcattggatacatctctttgtccggatatgaaggattttcacgtgatgtgtttccatctctaatttgg 288  Q
    |||||| |||||||||||||| |||||||||||||| ||||| || |||||||  || ||||||||||||||||| ||||| ||||||||| | || |||    
T  5243911 aagagtgcccttttcagtagtaaggtcaaaaagcatcggatatatttctttgtgtggctatgaaggattttcacgcgatgtatttccatctatcatctgg 5243812  T
Q  289 tcttggatgtcaccaacaa 307  Q
    |||||||||||||||||||    
T  5243811 tcttggatgtcaccaacaa 5243793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 150 - 319
Target Start/End: Original strand, 5383370 - 5383539
Alignment:
Q  150 atctttaaccactcagcttgcaaagaacactgcaataaaaagagtacccttttcagtagtgaggtcaaaaagcattggatacatctctttgtccggatat 249  Q
    ||||||||| |||  ||||||| | ||||||||||||| |||||| ||| ||||| |  | ||||||||||| |||| ||| || ||||||| |||  ||    
T  5383370 atctttaactactttgcttgcagataacactgcaataacaagagttcccctttcaattttaaggtcaaaaagtattgtatatatttctttgtgcggccat 5383469  T
Q  250 gaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaacaaataatctcccat 319  Q
    |||||||| ||||||||||||||||||||  | |||  ||||||||||||  ||||||||||||||||||    
T  5383470 gaaggattctcacgtgatgtgtttccatccatcattaagtcttggatgtcctcaacaaataatctcccat 5383539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 3 - 121
Target Start/End: Original strand, 5176822 - 5176940
Alignment:
Q  3 aagagtgccgttttcagtagtaagatcaaaaagcattggatatatctctttgtgtggttatgaagggttctcacatgatatatttccacttatcattcag 102  Q
    ||||||||| || ||| ||||||| ||||||||||||||||| ||||||||||| || |||||||| ||||||| |||||||||||||   ||||||  |    
T  5176822 aagagtgcccttgtcaatagtaaggtcaaaaagcattggatacatctctttgtgcggctatgaaggattctcacgtgatatatttccatcaatcatttgg 5176921  T
Q  103 tcttgtatgtcaccaacaa 121  Q
    ||||| |||||||||||||    
T  5176922 tcttggatgtcaccaacaa 5176940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 5066682 - 5066566
Alignment:
Q  13 ttttcagtagtaagatcaaaaagcattggatatatctctttgtgtggttatgaagggttctcacatgatatatttccacttatcattcagtcttgtatgt 112  Q
    |||||||||||||| ||||||||||||||||| ||||||||||| || |||||||| ||||| | |||| | ||||||  |||||||  |||||| ||||    
T  5066682 ttttcagtagtaaggtcaaaaagcattggatacatctctttgtgcggctatgaaggattctcgcgtgatgtgtttccatctatcattttgtcttggatgt 5066583  T
Q  113 caccaacaaatagtctc 129  Q
    |||||||||||| ||||    
T  5066582 caccaacaaataatctc 5066566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 3 - 138
Target Start/End: Complemental strand, 5073906 - 5073771
Alignment:
Q  3 aagagtgccgttttcagtagtaagatcaaaaagcattggatatatctctttgtgtggttatgaagggttctcacatgatatatttccacttatcattcag 102  Q
    ||||||||| |||||||||||||| || ||||||||||||||||| |||||||| || |||||||| ||||||| |||| | || |||   ||||||  |    
T  5073906 aagagtgcccttttcagtagtaaggtcgaaaagcattggatatatttctttgtgcggctatgaaggattctcacgtgatgtgttcccatcgatcatttgg 5073807  T
Q  103 tcttgtatgtcaccaacaaatagtctctcttcccca 138  Q
    ||||| |||||||| ||||||| |||| ||||||||    
T  5073806 tcttggatgtcaccgacaaataatctcacttcccca 5073771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 3 - 138
Target Start/End: Complemental strand, 5181925 - 5181790
Alignment:
Q  3 aagagtgccgttttcagtagtaagatcaaaaagcattggatatatctctttgtgtggttatgaagggttctcacatgatatatttccacttatcattcag 102  Q
    |||||||||||||||||||||||  || |||||||||| |||||| || |||||||| |||||||| |||||||||||| | ||||||   ||||||  |    
T  5181925 aagagtgccgttttcagtagtaaagtccaaaagcattgcatatatttccttgtgtggatatgaaggattctcacatgatgtgtttccagcgatcatttgg 5181826  T
Q  103 tcttgtatgtcaccaacaaatagtctctcttcccca 138  Q
    ||||| |||||||| ||||||| |||| | ||||||    
T  5181825 tcttggatgtcaccgacaaataatctcccatcccca 5181790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 6 - 124
Target Start/End: Complemental strand, 5102609 - 5102491
Alignment:
Q  6 agtgccgttttcagtagtaagatcaaaaagcattggatatatctctttgtgtggttatgaagggttctcacatgatatatttccacttatcattcagtct 105  Q
    |||||| |||||||||||||| |||||||||||||||||||||||| | ||||| ||||||||  | ||||||||| | ||||||  ||||||   ||||    
T  5102609 agtgcccttttcagtagtaaggtcaaaaagcattggatatatctctctatgtggctatgaaggactttcacatgatgtgtttccatctatcatctggtct 5102510  T
Q  106 tgtatgtcaccaacaaata 124  Q
    || ||||||||||||||||    
T  5102509 tggatgtcaccaacaaata 5102491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 3 - 121
Target Start/End: Complemental strand, 5243911 - 5243793
Alignment:
Q  3 aagagtgccgttttcagtagtaagatcaaaaagcattggatatatctctttgtgtggttatgaagggttctcacatgatatatttccacttatcattcag 102  Q
    ||||||||| |||||||||||||| ||||||||||| |||||||| ||||||||||| |||||||| || ||||  ||| ||||||||  ||||||   |    
T  5243911 aagagtgcccttttcagtagtaaggtcaaaaagcatcggatatatttctttgtgtggctatgaaggattttcacgcgatgtatttccatctatcatctgg 5243812  T
Q  103 tcttgtatgtcaccaacaa 121  Q
    ||||| |||||||||||||    
T  5243811 tcttggatgtcaccaacaa 5243793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 3 - 121
Target Start/End: Original strand, 5278649 - 5278767
Alignment:
Q  3 aagagtgccgttttcagtagtaagatcaaaaagcattggatatatctctttgtgtggttatgaagggttctcacatgatatatttccacttatcattcag 102  Q
    ||||||||| || ||  ||||||| ||||||||||||||||| ||||||||||| || |||||||| ||||||| |||||||||||||   ||||||  |    
T  5278649 aagagtgcccttgtctatagtaaggtcaaaaagcattggatacatctctttgtgcggctatgaaggattctcacgtgatatatttccatcaatcatttgg 5278748  T
Q  103 tcttgtatgtcaccaacaa 121  Q
    ||||| |||||||||||||    
T  5278749 tcttggatgtcaccaacaa 5278767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 5157628 - 5157500
Alignment:
Q  1 aaaagagtgccgttttcagtagtaagatcaaaaagcattggatatatctctttgtgtggttatgaagggttctcacatgatatatttccacttatcattc 100  Q
    |||||||| || |||||||||||||| ||||||||||||||||| ||||||||| | || |||||||| || || | |||| | ||||||  |||||||     
T  5157628 aaaagagtacccttttcagtagtaaggtcaaaaagcattggatacatctctttgggcggctatgaaggattttctcgtgatgtgtttccatctatcattt 5157529  T
Q  101 agtcttgtatgtcaccaacaaatagtctc 129  Q
     |||||| |||||||||||||||| ||||    
T  5157528 ggtcttggatgtcaccaacaaataatctc 5157500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 5344954 - 5345062
Alignment:
Q  13 ttttcagtagtaagatcaaaaagcattggatatatctctttgtgtggttatgaagggttctcacatgatatatttccacttatcattcagtcttgtatgt 112  Q
    |||| ||||||||| |||||||||||||||||||| ||| ||||||| |||||||| |||||||  ||| ||||||||  ||||||   |||||| ||||    
T  5344954 tttttagtagtaaggtcaaaaagcattggatatatttctctgtgtggctatgaaggattctcacgcgatgtatttccatctatcatctggtcttggatgt 5345053  T
Q  113 caccaacaa 121  Q
    |||||||||    
T  5345054 caccaacaa 5345062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 5128417 - 5128295
Alignment:
Q  1 aaaagagtgccgttttcagtagtaagatcaaaaagcattggatatatctctttgtgtggttatgaagggttctcacatgatatatttccacttatcattc 100  Q
    |||||||| || |||||||||||||| |||||||||||||||||||||||| |||| ||  ||||||| || |||  |||| | ||||||  ||||||      
T  5128417 aaaagagtacccttttcagtagtaaggtcaaaaagcattggatatatctctctgtgcggccatgaaggattttcaagtgatgtgtttccatctatcatct 5128318  T
Q  101 agtcttgtatgtcaccaacaaat 123  Q
     |||||| |||||||||||||||    
T  5128317 ggtcttggatgtcaccaacaaat 5128295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 31 - 129
Target Start/End: Complemental strand, 5354584 - 5354486
Alignment:
Q  31 aaaagcattggatatatctctttgtgtggttatgaagggttctcacatgatatatttccacttatcattcagtcttgtatgtcaccaacaaatagtctc 129  Q
    ||||||||||||||||| ||||| ||||| |||||||| ||||||| |||| | ||||||  |||||||  |||||| |||||||||||||||| ||||    
T  5354584 aaaagcattggatatatttctttatgtggctatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctc 5354486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 7 - 121
Target Start/End: Complemental strand, 5690153 - 5690039
Alignment:
Q  7 gtgccgttttcagtagtaagatcaaaaagcattggatatatctctttgtgtggttatgaagggttctcacatgatatatttccacttatcattcagtctt 106  Q
    ||||| |||||| | ||||| |||||||||||||| ||||| ||| |||| ||  ||||||| ||||||| |||||||||||||  |||||||  |||||    
T  5690153 gtgcccttttcaattgtaaggtcaaaaagcattgggtatatttctctgtgcggacatgaaggattctcacgtgatatatttccatctatcatttggtctt 5690054  T
Q  107 gtatgtcaccaacaa 121  Q
    | |||||||||||||    
T  5690053 ggatgtcaccaacaa 5690039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 5425991 - 5426128
Alignment:
Q  1 aaaagagtgccgttttcagtagtaagatcaaaaagcattggatatatctctttgtgtggttatgaagggttctcacatgatatatttccacttatcattc 100  Q
    |||||||| || |||||||| ||||  ||| ||||||||||||| ||||||||||| || |||||||| || |||| |||| | ||||||   ||||||     
T  5425991 aaaagagtacccttttcagtggtaatgtcacaaagcattggatacatctctttgtgcggctatgaaggattttcacgtgatgtgtttccagcgatcattt 5426090  T
Q  101 agtcttgtatgtcaccaacaaatagtctctcttcccca 138  Q
     |||||| |||||||||||||||| |||| | ||||||    
T  5426091 ggtcttggatgtcaccaacaaataatctcccatcccca 5426128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 124
Target Start/End: Original strand, 5350487 - 5350592
Alignment:
Q  13 ttttcagtagtaagatcaaaaagcattggatatatctctttgtgtggttatgaagggttctcacatgatatatttccacttatcattcagtcttgtatgt 112  Q
    |||||||||||||| ||||||||||||||||| ||||||||||| || |||||||| || |||| |||| | |      |||||||||| ||||| ||||    
T  5350487 ttttcagtagtaaggtcaaaaagcattggatacatctctttgtgcggctatgaaggattttcacgtgatgtgt------ttatcattcattcttggatgt 5350580  T
Q  113 caccaacaaata 124  Q
    ||||||||||||    
T  5350581 caccaacaaata 5350592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 123
Target Start/End: Original strand, 5370664 - 5370774
Alignment:
Q  13 ttttcagtagtaagatcaaaaagcattggatatatctctttgtgtggttatgaagggttctcacatgatatatttccacttatcattcagtcttgtatgt 112  Q
    |||||||||||| | ||||||||||||||||| || || ||||||||  ||| ||| || ||||||||| | ||||||  |||||||  |||||| ||||    
T  5370664 ttttcagtagtacggtcaaaaagcattggatacatttcattgtgtggccatgtaggattttcacatgatgtttttccatctatcatttggtcttggatgt 5370763  T
Q  113 caccaacaaat 123  Q
    |||||||||||    
T  5370764 caccaacaaat 5370774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 5397031 - 5397151
Alignment:
Q  1 aaaagagtgccgttttcagtagtaagatcaaaaagcattggatatatctctttgtgtggttatgaagggttctcacatgatatatttccacttatcattc 100  Q
    |||||||||||||||||| |  |||| | |||||||||||||| |||||||||||| || |||||||| || |||  |||  | ||||||  |||||||     
T  5397031 aaaagagtgccgttttcaattttaaggttaaaaagcattggatttatctctttgtgcggatatgaaggattttcatgtgaagtgtttccagctatcattt 5397130  T
Q  101 agtcttgtatgtcaccaacaa 121  Q
     |||||| |||||||||||||    
T  5397131 cgtcttggatgtcaccaacaa 5397151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 5096789 - 5096924
Alignment:
Q  1 aaaagagtgccgttttcagtagtaagatcaaaaagcattggatatatctctttgtgtggttatgaagggttctcacatgatatatttccacttatcattc 100  Q
    |||||||| || |||||||||||||| ||||||||||||||||| || ||| | |||||  ||||||| || |||| |||| | |||||   ||||||      
T  5096789 aaaagagtacccttttcagtagtaaggtcaaaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatct 5096888  T
Q  101 agtcttgtatgtcaccaacaaatagtctctcttccc 136  Q
     ||||||  ||||||||||||||| |||||| ||||    
T  5096889 ggtcttggttgtcaccaacaaataatctctcatccc 5096924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 5284387 - 5284325
Alignment:
Q  3 aagagtgccgttttcagtagtaagatcaaaaagcattggatatatctctttgtgtggttatga 65  Q
    ||||||||| |||||||||||||| || |||||||||||||||||  ||||||| ||||||||    
T  5284387 aagagtgcccttttcagtagtaaggtcgaaaagcattggatatattgctttgtgcggttatga 5284325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 176 - 296
Target Start/End: Original strand, 5281370 - 5281490
Alignment:
Q  176 acactgcaataaaaagagtacccttttcagtagtgaggtcaaaaagcattggatacatctctttgtccggatatgaaggattttcacgtgatgtgtttcc 275  Q
    |||||||||||| |||||| |||||| ||||||  ||||  |||| ||||||||| || ||||| | ||| ||| ||||||| |||||||||||  ||||    
T  5281370 acactgcaataacaagagttccctttgcagtaggaaggttgaaaaacattggatatatttctttctgcggctataaaggattctcacgtgatgtagttcc 5281469  T
Q  276 atctctaatttggtcttggat 296  Q
    || | | ||| ||||||||||    
T  5281470 atatatcattcggtcttggat 5281490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 300
Target Start/End: Complemental strand, 5257371 - 5257221
Alignment:
Q  150 atctttaaccactcagcttgcaaagaacactgcaataaaaagagtacccttttcagtagtgaggtcaaaaagcattggatacatctctttgtccggatat 249  Q
    ||||||||||||||   ||||||| ||||||||||||| |||||| || || |||||  | || ||||||||||| | ||   ||||||||  ||| |||    
T  5257371 atctttaaccactctaattgcaaataacactgcaataacaagagtgccattatcagttttaagatcaaaaagcatcgaatttgtctctttgcacggttat 5257272  T
Q  250 gaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtca 300  Q
    |||||||||||| |   |||||||||||   | |||| |||||||||||||    
T  5257271 gaaggattttcaagcattgtgtttccattaatcattttgtcttggatgtca 5257221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 124
Target Start/End: Original strand, 5447673 - 5447791
Alignment:
Q  6 agtgccgttttcagtagtaagatcaaaaagcattggatatatctctttgtgtggttatgaagggttctcacatgatatatttccacttatcattcagtct 105  Q
    |||||| ||||| ||||| || || || |||||||||||||| |||||||| || | |||||| | ||| |||||| | ||||||  ||| |||| ||||    
T  5447673 agtgcccttttcggtagttaggtcgaagagcattggatatatttctttgtgcggatttgaaggatcctcgcatgatgtgtttccatctattattcggtct 5447772  T
Q  106 tgtatgtcaccaacaaata 124  Q
    || |||||||||| |||||    
T  5447773 tggatgtcaccaagaaata 5447791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 318
Target Start/End: Complemental strand, 5137567 - 5137535
Alignment:
Q  286 tggtcttggatgtcaccaacaaataatctccca 318  Q
    |||||||||||||||||||||||||||||||||    
T  5137567 tggtcttggatgtcaccaacaaataatctccca 5137535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 296
Target Start/End: Original strand, 5179611 - 5179731
Alignment:
Q  176 acactgcaataaaaagagtacccttttcagtagtgaggtcaaaaagcattggatacatctctttgtccggatatgaaggattttcacgtgatgtgtttcc 275  Q
    ||||||||||||  ||||| |||||| ||||||  ||||  |||| ||||||||| || ||||| | ||| ||| ||||||| |||||||||||  ||||    
T  5179611 acactgcaataactagagttccctttgcagtaggaaggttgaaaaacattggatatatttctttctgcggctataaaggattctcacgtgatgtagttcc 5179710  T
Q  276 atctctaatttggtcttggat 296  Q
    || | | ||| ||||||||||    
T  5179711 atatatcattcggtcttggat 5179731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 353
Target Start/End: Original strand, 5350629 - 5350665
Alignment:
Q  317 catctcttgttcctttaaatgtaccacatagtagttc 353  Q
    ||||||||||||||||| |||||||||||||||||||    
T  5350629 catctcttgttcctttagatgtaccacatagtagttc 5350665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 353
Target Start/End: Original strand, 5370812 - 5370848
Alignment:
Q  317 catctcttgttcctttaaatgtaccacatagtagttc 353  Q
    ||||||||||||||||| |||||||||||||||||||    
T  5370812 catctcttgttcctttagatgtaccacatagtagttc 5370848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 350
Target Start/End: Complemental strand, 5066535 - 5066501
Alignment:
Q  316 ccatctcttgttcctttaaatgtaccacatagtag 350  Q
    |||||||||||||||||| ||||||||||||||||    
T  5066535 ccatctcttgttcctttagatgtaccacatagtag 5066501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 362
Target Start/End: Complemental strand, 5102454 - 5102409
Alignment:
Q  317 catctcttgttcctttaaatgtaccacatagtagttctcgcgaact 362  Q
    |||||||||||||| || ||||||||||||||||||| | ||||||    
T  5102454 catctcttgttcctctagatgtaccacatagtagttcccacgaact 5102409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 362
Target Start/End: Complemental strand, 5128257 - 5128212
Alignment:
Q  317 catctcttgttcctttaaatgtaccacatagtagttctcgcgaact 362  Q
    |||||||||||||| || ||||||||||||||||||| | ||||||    
T  5128257 catctcttgttcctctagatgtaccacatagtagttcccacgaact 5128212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 362
Target Start/End: Complemental strand, 5137506 - 5137461
Alignment:
Q  317 catctcttgttcctttaaatgtaccacatagtagttctcgcgaact 362  Q
    |||||||||||||| || ||||||||||||||||||| | ||||||    
T  5137506 catctcttgttcctctagatgtaccacatagtagttcccacgaact 5137461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 349
Target Start/End: Complemental strand, 5157468 - 5157436
Alignment:
Q  317 catctcttgttcctttaaatgtaccacatagta 349  Q
    ||||||||||||||||| |||||||||||||||    
T  5157468 catctcttgttcctttagatgtaccacatagta 5157436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 349
Target Start/End: Original strand, 5426151 - 5426183
Alignment:
Q  317 catctcttgttcctttaaatgtaccacatagta 349  Q
    ||||||||||||||||| |||||||||||||||    
T  5426151 catctcttgttcctttagatgtaccacatagta 5426183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 150 - 312
Target Start/End: Original strand, 8877653 - 8877815
Alignment:
Q  150 atctttaaccactcagcttgcaaagaacactgcaataaaaagagtacccttttcagtagtgaggtcaaaaagcattggatacatctctttgtccggatat 249  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||| |||||| |||| |||||||||||||||||||| || ||||||| ||| |||    
T  8877653 atctttaaccactctgcttgcaaataacactgcaataaaaagagtaccattttcattagtaaggtcaaaaagcattggatatatttctttgtgcggctat 8877752  T
Q  250 gaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaacaaataat 312  Q
    ||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  8877753 gaaggattttcgcgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataat 8877815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 8877690 - 8877813
Alignment:
Q  1 aaaagagtgccgttttcagtagtaagatcaaaaagcattggatatatctctttgtgtggttatgaagggttctcacatgatatatttccacttatcattc 100  Q
    |||||||| || |||||| ||||||| |||||||||||||||||||| |||||||| || |||||||| || || | |||| | ||||||  |||||||     
T  8877690 aaaagagtaccattttcattagtaaggtcaaaaagcattggatatatttctttgtgcggctatgaaggattttcgcgtgatgtgtttccatctatcattt 8877789  T
Q  101 agtcttgtatgtcaccaacaaata 124  Q
     |||||| ||||||||||||||||    
T  8877790 ggtcttggatgtcaccaacaaata 8877813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 217 - 305
Target Start/End: Complemental strand, 12599142 - 12599054
Alignment:
Q  217 aaaagcattggatacatctctttgtccggatatgaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaac 305  Q
    |||||||||||||| || || ||||  |||||||||||||| ||||||||||| ||||| ||||| | |||||||||||||||||||||    
T  12599142 aaaagcattggatatatatccttgtgtggatatgaaggattatcacgtgatgtttttccttctctcaattggtcttggatgtcaccaac 12599054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 214 - 305
Target Start/End: Original strand, 20838740 - 20838831
Alignment:
Q  214 tcaaaaagcattggatacatctctttgtccggatatgaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaac 305  Q
    ||||||||||||||||| || ||  | |  |||||||||||||| |||| |||||| ||||| ||||| |||||||||||||||||||||||    
T  20838740 tcaaaaagcattggatatatatcactatgtggatatgaaggattatcacatgatgtttttccttctctcatttggtcttggatgtcaccaac 20838831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 244 - 305
Target Start/End: Original strand, 20812415 - 20812476
Alignment:
Q  244 ggatatgaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaac 305  Q
    ||||| |||||||| ||||||||||| ||||| ||||| |||||||||||||||||||||||    
T  20812415 ggatacgaaggattatcacgtgatgtttttccttctctcatttggtcttggatgtcaccaac 20812476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 303
Target Start/End: Original strand, 15803019 - 15803108
Alignment:
Q  214 tcaaaaagcattggatacatctctttgtccggatatgaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcacca 303  Q
    ||||||||||||||||| || ||| | |  |||||| ||||||| |||| |||||| ||||| ||||| ||| |||||||||| ||||||    
T  15803019 tcaaaaagcattggatatatatctctatgtggatataaaggattatcacatgatgtttttccttctctcattaggtcttggatatcacca 15803108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 119
Target Start/End: Original strand, 20838718 - 20838831
Alignment:
Q  6 agtgccgttttcagtagtaagatcaaaaagcattggatatatctctttgtgtggttatgaagggttctcacatgatatatttccacttatcattcagtct 105  Q
    |||||| | |||| ||| |||||||||||||||||||||||| ||  | ||||| |||||||| || ||||||||| | |||||   | |||||  ||||    
T  20838718 agtgccctattcaatagcaagatcaaaaagcattggatatatatcactatgtggatatgaaggattatcacatgatgtttttccttctctcatttggtct 20838817  T
Q  106 tgtatgtcaccaac 119  Q
    || |||||||||||    
T  20838818 tggatgtcaccaac 20838831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 307
Target Start/End: Original strand, 30417958 - 30418021
Alignment:
Q  244 ggatatgaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaacaa 307  Q
    |||| |||||||||| |||||||||| ||||| | ||| ||  |||||||||||||||||||||    
T  30417958 ggatttgaaggatttgcacgtgatgtttttccttgtctcatacggtcttggatgtcaccaacaa 30418021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 15803016 - 15803072
Alignment:
Q  25 agatcaaaaagcattggatatatctctttgtgtggttatgaagggttctcacatgat 81  Q
    ||||||||||||||||||||||| ||| | ||||| ||| |||| || |||||||||    
T  15803016 agatcaaaaagcattggatatatatctctatgtggatataaaggattatcacatgat 15803072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 150 - 309
Target Start/End: Original strand, 4344690 - 4344849
Alignment:
Q  150 atctttaaccactcagcttgcaaagaacactgcaataaaaagagtacccttttcagtagtgaggtcaaaaagcattggatacatctctttgtccggatat 249  Q
    |||||||||||||| | ||||||| |||||||| |||| || |||||||||||||||||| ||||||||| |||||||||  || |||||||  ||||||    
T  4344690 atctttaaccactctgattgcaaataacactgctataacaaaagtacccttttcagtagtaaggtcaaaacgcattggatttatttctttgtgtggatat 4344789  T
Q  250 gaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaacaaat 309  Q
    |||||||| ||||||||||||||||| ||| | |||||||||||||||||||||||||||    
T  4344790 gaaggattctcacgtgatgtgtttccttctatcatttggtcttggatgtcaccaacaaat 4344849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 150 - 318
Target Start/End: Complemental strand, 4123976 - 4123808
Alignment:
Q  150 atctttaaccactcagcttgcaaagaacactgcaataaaaagagtacccttttcagtagtgaggtcaaaaagcattggatacatctctttgtccggatat 249  Q
    |||||||||||||| | ||||||| || ||||| |||| || ||| |||||||| ||||| |||||||||||||||||||  || ||| |||  ||||||    
T  4123976 atctttaaccactctgattgcaaataatactgctataacaaaagtgcccttttcggtagtaaggtcaaaaagcattggatttatttctctgtgtggatat 4123877  T
Q  250 gaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaacaaataatctccca 318  Q
    |||||||| || |||||||||||||| ||| | |||| ||||||||||| |||||||||||||||||||    
T  4123876 gaaggattctctcgtgatgtgtttccttctatcatttcgtcttggatgttaccaacaaataatctccca 4123808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 150 - 309
Target Start/End: Original strand, 4361121 - 4361280
Alignment:
Q  150 atctttaaccactcagcttgcaaagaacactgcaataaaaagagtacccttttcagtagtgaggtcaaaaagcattggatacatctctttgtccggatat 249  Q
    |||||||||||||| | ||||||| |||||||  |||| || ||||||||||||| | || || |||||| |||||||||  || |||||||  ||||||    
T  4361121 atctttaaccactctgattgcaaataacactggtataacaaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatat 4361220  T
Q  250 gaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaacaaat 309  Q
    |||||||| ||||||||||||||||| ||| | |||| ||||||||||||||||||||||    
T  4361221 gaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgtcaccaacaaat 4361280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 150 - 304
Target Start/End: Complemental strand, 4320656 - 4320502
Alignment:
Q  150 atctttaaccactcagcttgcaaagaacactgcaataaaaagagtacccttttcagtagtgaggtcaaaaagcattggatacatctctttgtccggatat 249  Q
    |||||||||||| | | ||||||| || ||||  |||| || ||| ||||||||| |||| |||||||||||||||||||  || ||| |||  ||||||    
T  4320656 atctttaaccaccctgattgcaaataatactggtataacaaaagttcccttttcattagtaaggtcaaaaagcattggatttatttctctgtgtggatat 4320557  T
Q  250 gaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaa 304  Q
    |||||||| ||||||||||||||||| ||| | ||||||||||||||||||||||    
T  4320556 gaaggattctcacgtgatgtgtttccttctatcatttggtcttggatgtcaccaa 4320502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 150 - 312
Target Start/End: Original strand, 4335389 - 4335551
Alignment:
Q  150 atctttaaccactcagcttgcaaagaacactgcaataaaaagagtacccttttcagtagtgaggtcaaaaagcattggatacatctctttgtccggatat 249  Q
    ||||||||||||||   | ||| | |||||||  |||| || ||| |||||||||||||| | ||||||||||||||| || ||||||||||  || |||    
T  4335389 atctttaaccactctcatggcagataacactggtataacaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtat 4335488  T
Q  250 gaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaacaaataat 312  Q
    |||||||| || |||||||||||||| ||| |||||||||||||||||  |||||||||||||    
T  4335489 gaaggattctcccgtgatgtgtttccttctataatttggtcttggatggtaccaacaaataat 4335551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 178 - 312
Target Start/End: Complemental strand, 6498535 - 6498401
Alignment:
Q  178 actgcaataaaaagagtacccttttcagtagtgaggtcaaaaagcattggatacatctctttgtccggatatgaaggattttcacgtgatgtgtttccat 277  Q
    ||||| |||| || ||| ||||||||| |||| || |||||||||||||||||||| |||||    |||| | ||||||||||||||||||| ||||| |    
T  6498535 actgctataacaaaagttcccttttcaatagtaagatcaaaaagcattggatacatttctttaggtggatttaaaggattttcacgtgatgtatttcctt 6498436  T
Q  278 ctctaatttggtcttggatgtcaccaacaaataat 312  Q
    |||| ||| ||||||||||||||||| ||||||||    
T  6498435 ctctcattcggtcttggatgtcaccatcaaataat 6498401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 4344739 - 4344857
Alignment:
Q  13 ttttcagtagtaagatcaaaaagcattggatatatctctttgtgtggttatgaagggttctcacatgatatatttccacttatcattcagtcttgtatgt 112  Q
    |||||||||||||| |||||| ||||||||| ||| ||||||||||| |||||||| ||||||| |||| | |||||   |||||||  |||||| ||||    
T  4344739 ttttcagtagtaaggtcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttggtcttggatgt 4344838  T
Q  113 caccaacaaatagtctctc 131  Q
    ||||||||||| |||||||    
T  4344839 caccaacaaatggtctctc 4344857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 4361170 - 4361288
Alignment:
Q  13 ttttcagtagtaagatcaaaaagcattggatatatctctttgtgtggttatgaagggttctcacatgatatatttccacttatcattcagtcttgtatgt 112  Q
    |||||| | |||||||||||| ||||||||| ||| ||||||||||| |||||||| ||||||| |||| | |||||   |||||||  |||||| ||||    
T  4361170 ttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgt 4361269  T
Q  113 caccaacaaatagtctctc 131  Q
    ||||||||||| |||||||    
T  4361270 caccaacaaatggtctctc 4361288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 196 - 312
Target Start/End: Original strand, 6675793 - 6675909
Alignment:
Q  196 cccttttcagtagtgaggtcaaaaagcattggatacatctctttgtccggatatgaaggattttcacgtgatgtgtttccatctctaatttggtcttgga 295  Q
    ||||||||| |||| || ||||| |||||||||| ||||||||| |  || | |||||||||||||| |||||| ||||| ||||| |||  ||||||||    
T  6675793 cccttttcaatagtaagatcaaagagcattggattcatctctttatgtggctttgaaggattttcacttgatgtatttccttctctcattaagtcttgga 6675892  T
Q  296 tgtcaccaacaaataat 312  Q
    |||||||| ||||||||    
T  6675893 tgtcaccatcaaataat 6675909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 4335431 - 4335499
Alignment:
Q  6 agtgccgttttcagtagtaagatcaaaaagcattggatatatctctttgtgtggttatgaagggttctc 74  Q
    |||||| |||||||||||||  |||||||||||||| ||||||||||||||||| |||||||| |||||    
T  4335431 agtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctc 4335499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 6 - 129
Target Start/End: Complemental strand, 4123934 - 4123811
Alignment:
Q  6 agtgccgttttcagtagtaagatcaaaaagcattggatatatctctttgtgtggttatgaagggttctcacatgatatatttccacttatcattcagtct 105  Q
    |||||| ||||| |||||||| |||||||||||||||| ||| ||| ||||||| |||||||| ||||| | |||| | |||||   |||||||  ||||    
T  4123934 agtgcccttttcggtagtaaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctctcgtgatgtgtttccttctatcatttcgtct 4123835  T
Q  106 tgtatgtcaccaacaaatagtctc 129  Q
    || |||| ||||||||||| ||||    
T  4123834 tggatgttaccaacaaataatctc 4123811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 13 - 118
Target Start/End: Complemental strand, 4320607 - 4320502
Alignment:
Q  13 ttttcagtagtaagatcaaaaagcattggatatatctctttgtgtggttatgaagggttctcacatgatatatttccacttatcattcagtcttgtatgt 112  Q
    |||||| ||||||| |||||||||||||||| ||| ||| ||||||| |||||||| ||||||| |||| | |||||   |||||||  |||||| ||||    
T  4320607 ttttcattagtaaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttggtcttggatgt 4320508  T
Q  113 caccaa 118  Q
    ||||||    
T  4320507 caccaa 4320502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 312
Target Start/End: Complemental strand, 6588166 - 6588071
Alignment:
Q  217 aaaagcattggatacatctctttgtccggatatgaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaacaaataat 312  Q
    |||||||||||||| || ||||| |  || | ||||||||||||||||||||| || || ||||| ||| ||||||||||||| ||| ||||||||    
T  6588166 aaaagcattggatatatttctttttgtggctttgaaggattttcacgtgatgtattcccttctctcattcggtcttggatgtcgccatcaaataat 6588071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 124
Target Start/End: Original strand, 6675796 - 6675907
Alignment:
Q  13 ttttcagtagtaagatcaaaaagcattggatatatctctttgtgtggttatgaagggttctcacatgatatatttccacttatcattcagtcttgtatgt 112  Q
    |||||| ||||||||||||| ||||||||||  |||||||| ||||| | |||||| || |||| |||| |||||||   | ||||| ||||||| ||||    
T  6675796 ttttcaatagtaagatcaaagagcattggattcatctctttatgtggctttgaaggattttcacttgatgtatttccttctctcattaagtcttggatgt 6675895  T
Q  113 caccaacaaata 124  Q
    ||||| ||||||    
T  6675896 caccatcaaata 6675907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 178 - 312
Target Start/End: Complemental strand, 6545457 - 6545323
Alignment:
Q  178 actgcaataaaaagagtacccttttcagtagtgaggtcaaaaagcattggatacatctctttgtccggatatgaaggattttcacgtgatgtgtttccat 277  Q
    ||||| |||| || ||| ||||||||| |||| || |  |||||||||||||| || |||||    || | ||||||||||||||||||||| || || |    
T  6545457 actgctataacaaaagtgcccttttcaatagttagattgaaaagcattggatatatttcttttcgtggctttgaaggattttcacgtgatgtattccctt 6545358  T
Q  278 ctctaatttggtcttggatgtcaccaacaaataat 312  Q
    |||| ||| |||||||| |||||||| ||||||||    
T  6545357 ctctcattcggtcttggctgtcaccatcaaataat 6545323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 303
Target Start/End: Complemental strand, 6621516 - 6621391
Alignment:
Q  178 actgcaataaaaagagtacccttttcagtagtgaggtcaaaaagcattggatacatctctttgtccggatatgaaggattttcacgtgatgtgtttccat 277  Q
    ||||| |||| || ||| ||||||||| ||||  | || |||| ||||||||| || ||||| |  |||| ||||||||||||||| ||||||||||| |    
T  6621516 actgctataacaaaagttcccttttcaatagtacgatctaaaaacattggatatatttctttatgtggatttgaaggattttcacgggatgtgtttcctt 6621417  T
Q  278 ctctaatttggtcttggatgtcacca 303  Q
    | || ||| | |||||||||||||||    
T  6621416 cacttattcgctcttggatgtcacca 6621391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 6498514 - 6498403
Alignment:
Q  13 ttttcagtagtaagatcaaaaagcattggatatatctctttgtgtggttatgaagggttctcacatgatatatttccacttatcattcagtcttgtatgt 112  Q
    |||||| ||||||||||||||||||||||||| || |||||  |||| | | |||| || |||| |||| |||||||   | |||||| |||||| ||||    
T  6498514 ttttcaatagtaagatcaaaaagcattggatacatttctttaggtggatttaaaggattttcacgtgatgtatttccttctctcattcggtcttggatgt 6498415  T
Q  113 caccaacaaata 124  Q
    ||||| ||||||    
T  6498414 caccatcaaata 6498403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 312
Target Start/End: Original strand, 6728549 - 6728612
Alignment:
Q  249 tgaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaacaaataat 312  Q
    ||||||||||||||||||||| || || |||||  |||||||||||||||| ||| ||||||||    
T  6728549 tgaaggattttcacgtgatgtattcccttctcttgtttggtcttggatgtcgccatcaaataat 6728612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 124
Target Start/End: Original strand, 6758818 - 6758928
Alignment:
Q  14 tttcagtagtaagatcaaaaagcattggatatatctctttgtgtggttatgaagggttctcacatgatatatttccacttatcattcagtcttgtatgtc 113  Q
    ||||| || |||||| |||||||||| ||| ||| ||| ||||||| | |||||| ||  ||| ||||||||||||  || |||||| |||| | |||||    
T  6758818 tttcaatattaagattaaaaagcattagatttatttctctgtgtggctttgaaggatttgcacgtgatatatttccttttgtcattcggtctaggatgtc 6758917  T
Q  114 accaacaaata 124  Q
    |||||||||||    
T  6758918 accaacaaata 6758928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 311
Target Start/End: Original strand, 6822802 - 6822896
Alignment:
Q  217 aaaagcattggatacatctctttgtccggatatgaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaacaaataa 311  Q
    |||||||||||||| || ||||| | ||| | ||||||||||||||||||||| || || ||||| ||| | |||||||| || ||| |||||||    
T  6822802 aaaagcattggatatatttctttatgcggctttgaaggattttcacgtgatgtattcccttctctcattcgctcttggatatcgccatcaaataa 6822896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 311
Target Start/End: Original strand, 6753032 - 6753165
Alignment:
Q  178 actgcaataaaaagagtacccttttcagtagtgaggtcaaaaagcattggatacatctctttgtccggatatgaaggattttcacgtgatgtgtttccat 277  Q
    ||||| |||| || ||| ||||||||| |||| || |  |||||||||||||| || |||||    || | ||||||||||||||||||||| || || |    
T  6753032 actgctataacaaaagtgcccttttcaatagtaagattgaaaagcattggatatatttcttttcgtggctttgaaggattttcacgtgatgtattccctt 6753131  T
Q  278 ctctaatttggtcttggatgtcaccaacaaataa 311  Q
    |||| ||| |||||||||| || ||| |||||||    
T  6753132 ctctcattcggtcttggatatcgccatcaaataa 6753165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 7885389 - 7885324
Alignment:
Q  3 aagagtgccgttttcagtagtaagatcaaaaagcattggatatatctctttgtgtggttatgaagg 68  Q
    ||||||||| ||| |||||||||||||||||||||||| || ||| ||| | ||||||||| ||||    
T  7885389 aagagtgccctttgcagtagtaagatcaaaaagcattgcatttatttctctatgtggttataaagg 7885324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 6 - 117
Target Start/End: Original strand, 6651153 - 6651264
Alignment:
Q  6 agtgccgttttcagtagtaagatcaaaaagcattggatatatctctttgtgtggttatgaagggttctcacatgatatatttccacttatcattcagtct 105  Q
    ||||||||||||| ||||||||| || || |||||||||||| ||| | ||||| | |||||| || ||||  ||| |||||||  || || ||| ||||    
T  6651153 agtgccgttttcaatagtaagattaagaaacattggatatatttctctatgtggctttgaaggattttcacgagatgtatttccttttctcgttcggtct 6651252  T
Q  106 tgtatgtcacca 117  Q
    || |||||||||    
T  6651253 tggatgtcacca 6651264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 312
Target Start/End: Original strand, 6815542 - 6815676
Alignment:
Q  178 actgcaataaaaagagtacccttttcagtagtgaggtcaaaaagcattggatacatctctttgtccggatatgaaggattttcacgtgatgtgtttccat 277  Q
    ||||| ||||||| ||| || |||||||| || || |  |||||||||||||| || |||||    || | |||||||||| |||||||||| ||| | |    
T  6815542 actgctataaaaaaagtgccattttcagtggtaagattgaaaagcattggatatatttctttaggtggctttgaaggatttacacgtgatgtattttctt 6815641  T
Q  278 ctctaatttggtcttggatgtcaccaacaaataat 312  Q
    ||||  || | ||||||||||||||| ||||||||    
T  6815642 ctctcgttcgctcttggatgtcaccatcaaataat 6815676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 6822772 - 6822857
Alignment:
Q  1 aaaagagtgccgttttcagtagtaagatcaaaaagcattggatatatctctttgtgtggttatgaagggttctcacatgatatatt 86  Q
    |||| |||||| |||||| |||||||||  ||||||||||||||||| ||||| || || | |||||| || |||| |||| ||||    
T  6822772 aaaaaagtgccattttcaatagtaagattgaaaagcattggatatatttctttatgcggctttgaaggattttcacgtgatgtatt 6822857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 308
Target Start/End: Complemental strand, 6532223 - 6532111
Alignment:
Q  196 cccttttcagtagtgaggtcaaaaagcattggatacatctctttgtccggatatgaaggattttcacgtgatgtgtttccatctctaatttggtcttgga 295  Q
    ||||||||| |||| ||  |||||| ||||| ||| || ||| | | ||| | |||||||||||||  |||||| ||||| ||| | ||| |||||||||    
T  6532223 cccttttcaatagtaagaccaaaaaacattgaatatatttctatttgcggctttgaaggattttcaaatgatgtatttccttctatcattcggtcttgga 6532124  T
Q  296 tgtcaccaacaaa 308  Q
    |||||||| ||||    
T  6532123 tgtcaccatcaaa 6532111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 6753046 - 6753126
Alignment:
Q  6 agtgccgttttcagtagtaagatcaaaaagcattggatatatctctttgtgtggttatgaagggttctcacatgatatatt 86  Q
    |||||| |||||| |||||||||  ||||||||||||||||| |||||  |||| | |||||| || |||| |||| ||||    
T  6753046 agtgcccttttcaatagtaagattgaaaagcattggatatatttcttttcgtggctttgaaggattttcacgtgatgtatt 6753126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 6815551 - 6815603
Alignment:
Q  1 aaaagagtgccgttttcagtagtaagatcaaaaagcattggatatatctcttt 53  Q
    |||| |||||| |||||||| |||||||  ||||||||||||||||| |||||    
T  6815551 aaaaaagtgccattttcagtggtaagattgaaaagcattggatatatttcttt 6815603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 150 - 321
Target Start/End: Complemental strand, 8937 - 8766
Alignment:
Q  150 atctttaaccactcagcttgcaaagaacactgcaataaaaagagtacccttttcagtagtgaggtcaaaaagcattggatacatctctttgtccggatat 249  Q
    |||||||||||||| ||||||| | ||||||||| ||| |||||| ||||||||| |||| ||||||||||| |||| ||| || ||||||| |||  ||    
T  8937 atctttaaccactctgcttgcagataacactgcattaacaagagtgcccttttcaatagtaaggtcaaaaagtattgtatatatttctttgtgcggccat 8838  T
Q  250 gaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaacaaataatctcccatct 321  Q
    |||||||| ||||||||||||||||||||| | |||  |||||||||||| |||||||||||||||||||||    
T  8837 gaaggattctcacgtgatgtgtttccatctatcattaagtcttggatgtctccaacaaataatctcccatct 8766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 150 - 309
Target Start/End: Complemental strand, 36213866 - 36213707
Alignment:
Q  150 atctttaaccactcagcttgcaaagaacactgcaataaaaagagtacccttttcagtagtgaggtcaaaaagcattggatacatctctttgtccggatat 249  Q
    ||||||||||||   | ||||||| ||||||||||||| |||||| || ||||||||||| || || |||||||| |  || || ||||||| ||| |||    
T  36213866 atctttaaccaccttgattgcaaataacactgcaataacaagagtgccattttcagtagtaagatctaaaagcatcgcttatatatctttgtgcggctat 36213767  T
Q  250 gaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaacaaat 309  Q
    |||||||| |||| |||||||||||||||| | |||||||||||||||||||||||||||    
T  36213766 gaaggattctcacatgatgtgtttccatctatcatttggtcttggatgtcaccaacaaat 36213707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 3 - 123
Target Start/End: Complemental strand, 36213827 - 36213707
Alignment:
Q  3 aagagtgccgttttcagtagtaagatcaaaaagcattggatatatctctttgtgtggttatgaagggttctcacatgatatatttccacttatcattcag 102  Q
    ||||||||| ||||||||||||||||| |||||||| |  ||||| |||||||| || |||||||| |||||||||||| | ||||||  |||||||  |    
T  36213827 aagagtgccattttcagtagtaagatctaaaagcatcgcttatatatctttgtgcggctatgaaggattctcacatgatgtgtttccatctatcatttgg 36213728  T
Q  103 tcttgtatgtcaccaacaaat 123  Q
    ||||| |||||||||||||||    
T  36213727 tcttggatgtcaccaacaaat 36213707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 18935469 - 18935534
Alignment:
Q  3 aagagtgccgttttcagtagtaagatcaaaaagcattggatatatctctttgtgtggttatgaagg 68  Q
    ||||||||| ||| ||||||||||||||||||||||||||| ||| ||  ||||||| | ||||||    
T  18935469 aagagtgccctttgcagtagtaagatcaaaaagcattggatttatttcactgtgtggatttgaagg 18935534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 309
Target Start/End: Original strand, 18935469 - 18935589
Alignment:
Q  189 aagagtacccttttcagtagtgaggtcaaaaagcattggatacatctctttgtccggatatgaaggattttcacgtgatgtgtttccatctctaatttgg 288  Q
    |||||| |||||| ||||||| || ||||||||||||||||  || ||  |||  |||| |||||||||  ||||| |||||||||| ||  | |||  |    
T  18935469 aagagtgccctttgcagtagtaagatcaaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcag 18935568  T
Q  289 tcttggatgtcaccaacaaat 309  Q
    ||||||||||| |||||||||    
T  18935569 tcttggatgtctccaacaaat 18935589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 247 - 320
Target Start/End: Complemental strand, 47986812 - 47986739
Alignment:
Q  247 tatgaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaacaaataatctcccatc 320  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||    
T  47986812 tatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcacatc 47986739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 247 - 320
Target Start/End: Complemental strand, 47996099 - 47996026
Alignment:
Q  247 tatgaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaacaaataatctcccatc 320  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||    
T  47996099 tatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcacatc 47996026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 247 - 320
Target Start/End: Complemental strand, 48005386 - 48005313
Alignment:
Q  247 tatgaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaacaaataatctcccatc 320  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||    
T  48005386 tatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcacatc 48005313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 247 - 320
Target Start/End: Complemental strand, 48014671 - 48014598
Alignment:
Q  247 tatgaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaacaaataatctcccatc 320  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||    
T  48014671 tatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcacatc 48014598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 6905870 - 6905806
Alignment:
Q  243 cggatatgaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaacaa 307  Q
    ||||||||||||||| ||||||||| | ||||| ||||| |||||||||||||||||||||||||    
T  6905870 cggatatgaaggattatcacgtgatatttttccttctctcatttggtcttggatgtcaccaacaa 6905806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 307
Target Start/End: Complemental strand, 32411146 - 32411083
Alignment:
Q  244 ggatatgaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaacaa 307  Q
    |||||||||||||| |||| ||| || ||||| ||||| |||||||||| ||||||||||||||    
T  32411146 ggatatgaaggattatcacatgaagtatttccctctctcatttggtcttagatgtcaccaacaa 32411083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 206 - 307
Target Start/End: Complemental strand, 3391637 - 3391536
Alignment:
Q  206 tagtgaggtcaaaaagcattggatacatctctttgtccggatatgaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaac 305  Q
    ||||||| ||||||||||||||||| || ||| | |  |||||||||||||| |||| | |||| ||||| ||||| ||| |||||||||||||||||||    
T  3391637 tagtgagatcaaaaagcattggatatatatctctatgtggatatgaaggattatcacatcatgtttttccttctctcattaggtcttggatgtcaccaac 3391538  T
Q  306 aa 307  Q
    ||    
T  3391537 aa 3391536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 196 - 305
Target Start/End: Complemental strand, 3262737 - 3262629
Alignment:
Q  196 cccttttcagtagtgaggtcaaaaagcattggatacatctctttgtccggatatgaaggattttcacgtgatgtgtttccatctctaatttggtcttgga 295  Q
    |||| |||| |||| || ||||||||||||||||| || ||  | |  |||||||| ||||||||||||||||| ||||| ||| | |||||||||||||    
T  3262737 ccctattcaatagtaagatcaaaaagcattggatatatatccctatgtggatatga-ggattttcacgtgatgtttttccctctatcatttggtcttgga 3262639  T
Q  296 tgtcaccaac 305  Q
    ||||||||||    
T  3262638 tgtcaccaac 3262629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 206 - 307
Target Start/End: Original strand, 3364269 - 3364370
Alignment:
Q  206 tagtgaggtcaaaaagcattggatacatctctttgtccggatatgaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaac 305  Q
    ||||||| ||||||||||||||||| || ||| | |  |||||||||||||| |||| | |||| ||||| ||||| ||| |||||||||| ||||||||    
T  3364269 tagtgagatcaaaaagcattggatatatatctctatgtggatatgaaggattatcacatcatgtttttccttctctcattaggtcttggatatcaccaac 3364368  T
Q  306 aa 307  Q
    ||    
T  3364369 aa 3364370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 307
Target Start/End: Complemental strand, 3407386 - 3407323
Alignment:
Q  244 ggatatgaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaacaa 307  Q
    |||||| ||||||| ||||||||||| ||||| ||| | |||||||||||||||||||||||||    
T  3407386 ggatatcaaggattatcacgtgatgtttttccttctatcatttggtcttggatgtcaccaacaa 3407323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 305
Target Start/End: Original strand, 31175955 - 31176046
Alignment:
Q  214 tcaaaaagcattggatacatctctttgtccggatatgaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaac 305  Q
    ||||||||||||| ||| || ||| | |  |||||||||||||| ||| |||| || ||||| ||||| |||||||||||||||||||||||    
T  31175955 tcaaaaagcattgcatatatatctctatgtggatatgaaggattatcatgtgacgtttttccttctctcatttggtcttggatgtcaccaac 31176046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 244 - 306
Target Start/End: Complemental strand, 3286578 - 3286516
Alignment:
Q  244 ggatatgaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaaca 306  Q
    |||||||||||||| |||| |||||| |||| |||||| ||| ||||||||||||||||||||    
T  3286578 ggatatgaaggattatcacatgatgtttttcaatctctcattaggtcttggatgtcaccaaca 3286516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 304
Target Start/End: Original strand, 3314998 - 3315056
Alignment:
Q  246 atatgaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaa 304  Q
    ||||||||| || ||||||||||| ||||| ||| | ||||||||||||||||||||||    
T  3314998 atatgaaggtttatcacgtgatgtttttccttctatcatttggtcttggatgtcaccaa 3315056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 3391637 - 3391536
Alignment:
Q  20 tagtaagatcaaaaagcattggatatatctctttgtgtggttatgaagggttctcacatgatatatttccacttatcattcagtcttgtatgtcaccaac 119  Q
    |||| ||||||||||||||||||||||| ||| | ||||| |||||||| || |||||| || | |||||   | |||||  |||||| |||||||||||    
T  3391637 tagtgagatcaaaaagcattggatatatatctctatgtggatatgaaggattatcacatcatgtttttccttctctcattaggtcttggatgtcaccaac 3391538  T
Q  120 aa 121  Q
    ||    
T  3391537 aa 3391536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 7164714 - 7164654
Alignment:
Q  245 gatatgaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaac 305  Q
    |||||||||| || ||  ||||||| ||||| ||||| |||||||||||||||||||||||    
T  7164714 gatatgaagggttatcctgtgatgtttttccttctcttatttggtcttggatgtcaccaac 7164654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 120
Target Start/End: Complemental strand, 3286630 - 3286516
Alignment:
Q  6 agtgccgttttcagtagtaagatcaaaaagcattggatatatctctttgtgtggttatgaagggttctcacatgatatatttccacttatcattcagtct 105  Q
    |||||| |||||| | |||||||||||||||||  ||||||| ||  | ||||| |||||||| || ||||||||| | |||| |  | |||||  ||||    
T  3286630 agtgcccttttcaattgtaagatcaaaaagcatcagatatatatccctatgtggatatgaaggattatcacatgatgtttttcaatctctcattaggtct 3286531  T
Q  106 tgtatgtcaccaaca 120  Q
    || ||||||||||||    
T  3286530 tggatgtcaccaaca 3286516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 3364269 - 3364327
Alignment:
Q  20 tagtaagatcaaaaagcattggatatatctctttgtgtggttatgaagggttctcacat 78  Q
    |||| ||||||||||||||||||||||| ||| | ||||| |||||||| || ||||||    
T  3364269 tagtgagatcaaaaagcattggatatatatctctatgtggatatgaaggattatcacat 3364327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 3262732 - 3262700
Alignment:
Q  15 ttcagtagtaagatcaaaaagcattggatatat 47  Q
    |||| ||||||||||||||||||||||||||||    
T  3262732 ttcaatagtaagatcaaaaagcattggatatat 3262700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 304
Target Start/End: Complemental strand, 3325063 - 3325003
Alignment:
Q  244 ggatatgaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaa 304  Q
    |||||||||||| | ||||  ||||| ||||| ||| | ||||||||||||||||||||||    
T  3325063 ggatatgaaggactatcacacgatgtttttccttctatcatttggtcttggatgtcaccaa 3325003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 150 - 307
Target Start/End: Complemental strand, 22584251 - 22584094
Alignment:
Q  150 atctttaaccactcagcttgcaaagaacactgcaataaaaagagtacccttttcagtagtgaggtcaaaaagcattggatacatctctttgtccggatat 249  Q
    |||||||||||||| |||||||||  | ||||||||||||| ||| || |||||| || | ||||||||||  ||| | ||||| |||||||  || |||    
T  22584251 atctttaaccactctgcttgcaaatgaaactgcaataaaaaaagtgccattttcaatatttaggtcaaaaactatttggtacatttctttgtgtggctat 22584152  T
Q  250 gaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaacaa 307  Q
    |||||| | | | | |||||  |||||||| | |||||||||||||||||| ||||||    
T  22584151 gaaggactcttaagcgatgtagttccatctatgatttggtcttggatgtcatcaacaa 22584094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 14767045 - 14766978
Alignment:
Q  23 taagatcaaaaagcattggatatatctctttgtgtggttatgaagggttctcacatgatatatttcca 90  Q
    |||||| |||||||||||||||||| ||  | |||||||||||||| || || |||||||| ||||||    
T  14767045 taagattaaaaagcattggatatatatccctatgtggttatgaaggattatcgcatgatatttttcca 14766978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 6210 - 6146
Alignment:
Q  243 cggatatgaaggattttcacgtgatgtgtttccatctctaatttggtcttggatgtcaccaacaa 307  Q
    ||||||||||||||| ||||||||||| ||||| || || |||||||||||||||||||||||||    
T  6210 cggatatgaaggattatcacgtgatgtttttccttcccttatttggtcttggatgtcaccaacaa 6146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 303
Target Start/End: Original strand, 6731 - 6856
Alignment:
Q  178 actgcaataaaaagagtacccttttcagtagtgaggtcaaaaagcattggatacatctctttgtccggatatgaaggattttcacgtgatgtgtttccat 277  Q
    ||||| |||| || ||| ||||||||| ||||  | || |||| ||||||||| || ||||| |  |||| ||||||||||||||| ||||||||||| |    
T  6731 actgctataacaaaagttcccttttcaatagtacgatctaaaaacattggatatatttctttatgtggatttgaaggattttcacgggatgtgtttcctt 6830  T
Q  278 ctctaatttggtcttggatgtcacca 303  Q
    | || ||| | |||||||||||||||    
T  6831 cacttattcgctcttggatgtcacca 6856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0813 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0813
Description:

Target: scaffold0813; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 6 - 117
Target Start/End: Complemental strand, 4821 - 4710
Alignment:
Q  6 agtgccgttttcagtagtaagatcaaaaagcattggatatatctctttgtgtggttatgaagggttctcacatgatatatttccacttatcattcagtct 105  Q
    ||||||||||||| ||||||||| || || |||||||||||| ||| | ||||| | |||||| || ||||  ||| |||||||  || || ||| ||||    
T  4821 agtgccgttttcaatagtaagattaagaaacattggatatatttctctatgtggctttgaaggattttcacgagatgtatttccttttctcgttcggtct 4722  T
Q  106 tgtatgtcacca 117  Q
    || |||||||||    
T  4721 tggatgtcacca 4710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University