View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7048_high_4 (Length: 251)

Name: NF7048_high_4
Description: NF7048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7048_high_4
NF7048_high_4
[»] chr3 (5 HSPs)
chr3 (1-87)||(41980220-41980306)
chr3 (119-173)||(17441804-17441858)
chr3 (119-169)||(17472049-17472099)
chr3 (127-171)||(8820460-8820504)
chr3 (15-59)||(41984177-41984221)
[»] chr2 (5 HSPs)
chr2 (119-173)||(45109479-45109533)
chr2 (119-162)||(45107771-45107814)
chr2 (119-169)||(37349816-37349866)
chr2 (119-163)||(4108913-4108957)
chr2 (127-171)||(13968988-13969032)
[»] chr7 (4 HSPs)
chr7 (119-171)||(23792802-23792854)
chr7 (127-173)||(12611860-12611906)
chr7 (127-171)||(17835141-17835185)
chr7 (127-171)||(25248880-25248924)
[»] chr5 (2 HSPs)
chr5 (119-171)||(22860691-22860743)
chr5 (119-171)||(38472251-38472303)
[»] chr1 (4 HSPs)
chr1 (119-171)||(7351735-7351787)
chr1 (119-171)||(13117385-13117437)
chr1 (132-169)||(7644721-7644758)
chr1 (2-71)||(18990858-18990927)
[»] chr4 (4 HSPs)
chr4 (127-171)||(24826676-24826720)
chr4 (119-171)||(25243482-25243534)
chr4 (119-163)||(31954817-31954861)
chr4 (119-171)||(40137895-40137945)


Alignment Details
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 41980220 - 41980306
Alignment:
Q  1 cacttttggcaattactgtcatattgctgggacataaataatagcaagagattaaaccaagtctaggaattgaaacaaaatactaat 87  Q
    |||||| |||||| | |||||||||||  ||||||  |||||||||| |||||||||||||| ||||||||||||||||||| ||||    
T  41980220 cactttgggcaatcaatgtcatattgccaggacatcgataatagcaaaagattaaaccaagtttaggaattgaaacaaaataataat 41980306  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 173
Target Start/End: Original strand, 17441804 - 17441858
Alignment:
Q  119 tttcactaagcagctcacatgttgtaattatcttgtgtttacataggtgaacatt 173  Q
    ||||||| |||||||||| ||||||||||| |||||||||||||| |||||||||    
T  17441804 tttcactgagcagctcacctgttgtaattaacttgtgtttacatacgtgaacatt 17441858  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 169
Target Start/End: Original strand, 17472049 - 17472099
Alignment:
Q  119 tttcactaagcagctcacatgttgtaattatcttgtgtttacataggtgaa 169  Q
    ||||||| |||||||||| ||||||||||| |||||||||||||| |||||    
T  17472049 tttcactgagcagctcacctgttgtaattaacttgtgtttacatacgtgaa 17472099  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 8820504 - 8820460
Alignment:
Q  127 agcagctcacatgttgtaattatcttgtgtttacataggtgaaca 171  Q
    |||||||||| ||||||||||| ||||||||| |||| |||||||    
T  8820504 agcagctcacctgttgtaattaacttgtgttttcatacgtgaaca 8820460  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 41984177 - 41984221
Alignment:
Q  15 actgtcatattgctgggacataaataatagcaagagattaaacca 59  Q
    |||||||||||||  ||||||||||||||| || |||||||||||    
T  41984177 actgtcatattgccaggacataaataatagtaaaagattaaacca 41984221  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 45109533 - 45109479
Alignment:
Q  119 tttcactaagcagctcacatgttgtaattatcttgtgtttacataggtgaacatt 173  Q
    ||||||| |||||||||| |||||||||||||||||||||||||| |||||||||    
T  45109533 tttcactgagcagctcacctgttgtaattatcttgtgtttacatacgtgaacatt 45109479  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 162
Target Start/End: Complemental strand, 45107814 - 45107771
Alignment:
Q  119 tttcactaagcagctcacatgttgtaattatcttgtgtttacat 162  Q
    ||||||| |||||||||| |||||||||||||||||||||||||    
T  45107814 tttcactgagcagctcacctgttgtaattatcttgtgtttacat 45107771  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 169
Target Start/End: Original strand, 37349816 - 37349866
Alignment:
Q  119 tttcactaagcagctcacatgttgtaattatcttgtgtttacataggtgaa 169  Q
    ||||||| |||||||||| ||||||||||| |||||||||||||| |||||    
T  37349816 tttcactgagcagctcacctgttgtaattaacttgtgtttacatacgtgaa 37349866  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 163
Target Start/End: Complemental strand, 4108957 - 4108913
Alignment:
Q  119 tttcactaagcagctcacatgttgtaattatcttgtgtttacata 163  Q
    ||||||| |||||||||| ||||||||||| ||||||||||||||    
T  4108957 tttcactgagcagctcacctgttgtaattaacttgtgtttacata 4108913  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 13968988 - 13969032
Alignment:
Q  127 agcagctcacatgttgtaattatcttgtgtttacataggtgaaca 171  Q
    |||||||||| ||||||||||| |||||||||||||| |||||||    
T  13968988 agcagctcacttgttgtaattaacttgtgtttacatacgtgaaca 13969032  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 23792802 - 23792854
Alignment:
Q  119 tttcactaagcagctcacatgttgtaattatcttgtgtttacataggtgaaca 171  Q
    ||||||| |||| |||||||||||||||||||||||||||||||| |||||||    
T  23792802 tttcactgagcaactcacatgttgtaattatcttgtgtttacatacgtgaaca 23792854  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 173
Target Start/End: Complemental strand, 12611906 - 12611860
Alignment:
Q  127 agcagctcacatgttgtaattatcttgtgtttacataggtgaacatt 173  Q
    |||||||||| ||||||||||| |||||||||||||| |||||||||    
T  12611906 agcagctcacctgttgtaattaacttgtgtttacatacgtgaacatt 12611860  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 17835141 - 17835185
Alignment:
Q  127 agcagctcacatgttgtaattatcttgtgtttacataggtgaaca 171  Q
    |||||||||| ||||||||||| |||||||||||||| |||||||    
T  17835141 agcagctcacctgttgtaattaacttgtgtttacatacgtgaaca 17835185  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 25248924 - 25248880
Alignment:
Q  127 agcagctcacatgttgtaattatcttgtgtttacataggtgaaca 171  Q
    |||||||||| ||||||||||| |||||||||||||| |||||||    
T  25248924 agcagctcacctgttgtaattaacttgtgtttacatacgtgaaca 25248880  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 22860691 - 22860743
Alignment:
Q  119 tttcactaagcagctcacatgttgtaattatcttgtgtttacataggtgaaca 171  Q
    |||||||||||||||||| ||||||||||| ||| |||||||||| |||||||    
T  22860691 tttcactaagcagctcacctgttgtaattaacttatgtttacatacgtgaaca 22860743  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 38472251 - 38472303
Alignment:
Q  119 tttcactaagcagctcacatgttgtaattatcttgtgtttacataggtgaaca 171  Q
    ||||||| |||||||||  ||||||||||| |||||||||||||| |||||||    
T  38472251 tttcactgagcagctcatctgttgtaattaacttgtgtttacatacgtgaaca 38472303  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 7351787 - 7351735
Alignment:
Q  119 tttcactaagcagctcacatgttgtaattatcttgtgtttacataggtgaaca 171  Q
    ||||||| || ||||||| |||||||||||||||||||||||||| |||||||    
T  7351787 tttcactgagtagctcacctgttgtaattatcttgtgtttacatacgtgaaca 7351735  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 13117385 - 13117437
Alignment:
Q  119 tttcactaagcagctcacatgttgtaattatcttgtgtttacataggtgaaca 171  Q
    ||||||| ||||||||| ||| |||||||| |||||||||||||| |||||||    
T  13117385 tttcactgagcagctcatatggtgtaattaacttgtgtttacatacgtgaaca 13117437  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 7644721 - 7644758
Alignment:
Q  132 ctcacatgttgtaattatcttgtgtttacataggtgaa 169  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  7644721 ctcacatgttgtaattaacttgtgtttacatacgtgaa 7644758  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 18990858 - 18990927
Alignment:
Q  2 acttttggcaattactgtcatattgctgggacataaataatagcaagagattaaaccaagtctaggaatt 71  Q
    |||||||||||| ||| ||||| ||    |||||||||||||| || |||||||||||||| ||||||||    
T  18990858 acttttggcaatcactatcatactgtcatgacataaataatagtaaaagattaaaccaagtataggaatt 18990927  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 24826676 - 24826720
Alignment:
Q  127 agcagctcacatgttgtaattatcttgtgtttacataggtgaaca 171  Q
    |||||||||| ||||||||||| |||||||||||||| |||||||    
T  24826676 agcagctcacctgttgtaattaacttgtgtttacatacgtgaaca 24826720  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 25243482 - 25243534
Alignment:
Q  119 tttcactaagcagctcacatgttgtaattatcttgtgtttacataggtgaaca 171  Q
    ||||||| |||||||||| |||||||||||  ||||||||||||| |||||||    
T  25243482 tttcactgagcagctcacctgttgtaattaatttgtgtttacatacgtgaaca 25243534  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 163
Target Start/End: Original strand, 31954817 - 31954861
Alignment:
Q  119 tttcactaagcagctcacatgttgtaattatcttgtgtttacata 163  Q
    ||||||| |||||||||| ||||||||||| ||||||||||||||    
T  31954817 tttcactgagcagctcacctgttgtaattaacttgtgtttacata 31954861  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 40137895 - 40137945
Alignment:
Q  119 tttcactaagcagctcacatgttgtaattatcttgtgtttacataggtgaaca 171  Q
    |||||||||||||||||| ||||||||||| ||  |||||||||| |||||||    
T  40137895 tttcactaagcagctcacctgttgtaattaact--tgtttacatacgtgaaca 40137945  T

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