View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7048_low_1 (Length: 466)
Name: NF7048_low_1
Description: NF7048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7048_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 259 - 451
Target Start/End: Complemental strand, 26898823 - 26898631
Alignment:
| Q |
259 |
gaacgaaatggactttagtggaatggactaacacacacgtctaagaagctgacgcatactttcactgaactttacaagtatgtgtgtgatagcaatacca |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26898823 |
gaacgaaatggactttagtggaatggactaacacacacgtctaagaagctgacgcatactttcactaaactttacaagtatgtgtgtgatagcaatacca |
26898724 |
T |
|
| Q |
359 |
acggagtttggcatcgttgggcacatttattttctatcaacttcgaaagtgaccagcttgttatcagttaacaaaaatctagaaggttgggat |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26898723 |
acggagtttggcatcgttgggcacatttattttctatcaacttcgaaagtgaccagcttgttatcagttaacaaaaatctagaaggttgggat |
26898631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 13 - 191
Target Start/End: Complemental strand, 26899069 - 26898891
Alignment:
| Q |
13 |
aatatatacttaattttttaaataaatataagtaaatatcaaagcttgacattttatcttcaaagctcttgtaaaattgagatgattgctgnnnnnnnag |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
26899069 |
aatatatacttaattttttaaataaatataagtaaatatcaaagcttgacattgtatcttcaaagctcttgtaaaattgtgatgattgctgtttttttag |
26898970 |
T |
|
| Q |
113 |
gtagagattattgctgttgttattaataatttctcccctgacannnnnnnaaataaaagacagataagtaaatatcaac |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
26898969 |
gtagagattattgctgttgttattaataatttctcccctgacgtttttttaaattaaagacagataagtaaatatcaac |
26898891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University