View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7048_low_3 (Length: 373)
Name: NF7048_low_3
Description: NF7048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7048_low_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 4e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 4 - 373
Target Start/End: Complemental strand, 34399411 - 34399035
Alignment:
| Q |
4 |
taaaatgtaaattcagacctgcaagtctgcaaccatgttatgtgtgt--atatattgttaacccggtttttaggagannnnnnnn--ggtaatatatagt |
99 |
Q |
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| T |
34399411 |
taaaatgtaaattcagacctgcaagtctgcaaccatgttatgtgtgtgtatatattgttaacccggtttttaggagattttttttttggtaatatatagt |
34399312 |
T |
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| Q |
100 |
tgggttgaaaaatacatcaatatattattaagaattgttctatcgatcaaacttaattattttaaacaatt---catctgttgatctcattaatcactag |
196 |
Q |
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| T |
34399311 |
tcagtcgagaagtacataaa-atatgattaagaattgttctagcgaccaaacttaattattttaaacaatttgtcttctgttgatctcattaatcactag |
34399213 |
T |
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| Q |
197 |
agtctaattgtttggtttgtaattttatatttttcaacacttagcgtgagtgagttttatcattattattta-tnnnnnnnnnnnnntcttactaatccc |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||| ||||||| | |
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| T |
34399212 |
agtctaattgtttggtttgtaattttatatttttcaacagttagcgtgagtgagttttacagttattatttacagaaaaaaaaaaaatctaactaatcac |
34399113 |
T |
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| Q |
296 |
atactcacatggtaactccctaaattaaaggacatctacaacatctcatcgaaggtggcaattccatttgaatatcat |
373 |
Q |
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||||||||||||||||||||||| |||||||||||||| ||||||| |||||| ||| |||||||||||||||||||| |
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| T |
34399112 |
atactcacatggtaactccctaatttaaaggacatctaaaacatcttatcgaatgtgccaattccatttgaatatcat |
34399035 |
T |
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