View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7049_high_1 (Length: 395)
Name: NF7049_high_1
Description: NF7049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7049_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 11 - 377
Target Start/End: Complemental strand, 27298038 - 27297672
Alignment:
| Q |
11 |
cagagaggtaaccctaattttcagaagcctcaatatccttaccaacagtattgacaaaatcctcaagaacctagaacacaaacacttgaggatacattaa |
110 |
Q |
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| T |
27298038 |
cagagaggtaaccctaattttcagaagcctcaatatccttagcaacagtattgacaaaatcctcaagaacctagaacacaaacacttgaggatacattaa |
27297939 |
T |
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| Q |
111 |
aattgtttatgcaagtctctcttcagaaccaggaaaacataaagccctcaatcaaagatatttgaggcacaattagagaaacttggaaccaaataggctc |
210 |
Q |
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| T |
27297938 |
aattgtttatgcaagtctctcttcagaaccaggaaaacataaagccctcaatcaaagatatttgaggcacaattagagaaacttggaaccaaataggctc |
27297839 |
T |
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| Q |
211 |
atgaacgtccaaaaggtaagttaacatacataaaaaatgccagctttagcagtgaattcatatatcaataaggcaagttcactgctagcactgaaaaggt |
310 |
Q |
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| T |
27297838 |
atgaacgtccaaaaggtaagttaacatacataaaaaatgccagctttagcagtgaattcatatatcaataaggcaagttcactgctagcactgaaaaggt |
27297739 |
T |
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| Q |
311 |
aaattcacttctaacacttccacccactactagaaatctacgtttttcctgcggatttcggacaaaa |
377 |
Q |
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| T |
27297738 |
aaattcacttctaacacttccacccactactggaaatctacgtttttcctgcggatttcggccaaaa |
27297672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 335 - 367
Target Start/End: Original strand, 21076813 - 21076845
Alignment:
| Q |
335 |
cactactagaaatctacgtttttcctgcggatt |
367 |
Q |
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| T |
21076813 |
cactactagaaatctacgattttcctgcggatt |
21076845 |
T |
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