View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7049_high_4 (Length: 330)

Name: NF7049_high_4
Description: NF7049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7049_high_4
NF7049_high_4
[»] chr7 (2 HSPs)
chr7 (1-247)||(45047538-45047787)
chr7 (203-299)||(45043775-45043872)
[»] chr6 (3 HSPs)
chr6 (1-52)||(25571909-25571960)
chr6 (1-52)||(26006377-26006428)
chr6 (1-52)||(26125142-26125193)
[»] chr2 (1 HSPs)
chr2 (1-52)||(23362962-23363013)
[»] chr4 (1 HSPs)
chr4 (1-52)||(31606053-31606104)
[»] chr3 (2 HSPs)
chr3 (204-299)||(38345862-38345956)
chr3 (217-293)||(38358225-38358300)
[»] chr5 (2 HSPs)
chr5 (1-52)||(12633032-12633083)
chr5 (11-41)||(2775810-2775840)


Alignment Details
Target: chr7 (Bit Score: 183; Significance: 6e-99; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 45047787 - 45047538
Alignment:
Q  1 atttattgtaggaggcttagaattttgacacattggattggggcaaatttttaagattaagattaagatattatctggagnnnnnnnctcattttgttcc 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||       |||||||| ||||    
T  45047787 atttattgtaggaggcttagaattttgacacattagattggggcaaatttttaagattaagattaagatattatctggagaaaaaaactcattttattcc 45047688  T
Q  101 tattcattgttataaattttatcagttaattcatgtacttggtctatacaattgtggtagaagggg---nnnnnnnnggatttttgtgataaatctctat 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||    
T  45047687 tattcattgttataaattttatcagttaattcatgtacttggtctatacaattgtggtagaaggggaaaaaaaaaaaggatttttgtgataaatctctat 45047588  T
Q  198 tagtgtttacttacatgttaattattattggaattggatttgtagatgta 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45047587 tagtgtttacttacatgttaattattattggaattggatttgtagatgta 45047538  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 299
Target Start/End: Complemental strand, 45043872 - 45043775
Alignment:
Q  203 tttacttacatgttaat--tattattggaattggatttgtagatgtatcctacaaccattgatgcaactcgtggtatcattcgaatttctggggcaata 299  Q
    ||||||||||| |||||  ||||||||||||||| ||||||||||| ||||   || || |||||||| |  ||||| |||||||||||||| ||||||    
T  45043872 tttacttacattttaatcatattattggaattggctttgtagatgtttcct-ttactatcgatgcaacacacggtattattcgaatttctggagcaata 45043775  T

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Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 25571960 - 25571909
Alignment:
Q  1 atttattgtaggaggcttagaattttgacacattggattggggcaaattttt 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25571960 atttattgtaggaggcttagaattttgacacattggattggggcaaattttt 25571909  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 26006428 - 26006377
Alignment:
Q  1 atttattgtaggaggcttagaattttgacacattggattggggcaaattttt 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26006428 atttattgtaggaggcttagaattttgacacattggattggggcaaattttt 26006377  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 26125193 - 26125142
Alignment:
Q  1 atttattgtaggaggcttagaattttgacacattggattggggcaaattttt 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26125193 atttattgtaggaggcttagaattttgacacattggattggggcaaaatttt 26125142  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 23363013 - 23362962
Alignment:
Q  1 atttattgtaggaggcttagaattttgacacattggattggggcaaattttt 52  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  23363013 atttattgtaggaggcttagaattttgacacattggattggtgcaatttttt 23362962  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 31606104 - 31606053
Alignment:
Q  1 atttattgtaggaggcttagaattttgacacattggattggggcaaattttt 52  Q
    |||||||||||| |||||||||||||||||||||||||||  ||||||||||    
T  31606104 atttattgtaggtggcttagaattttgacacattggattgaagcaaattttt 31606053  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 299
Target Start/End: Original strand, 38345862 - 38345956
Alignment:
Q  204 ttacttacatgttaattattattggaattggatttgtagatgtatcctacaaccattgatgcaactcgtggtatcattcgaatttctggggcaata 299  Q
    |||||||||| ||  ||||| |||||||||||  |||||||||||| | |||| ||||||||||| | |||||| |||||||||||||| ||||||    
T  38345862 ttacttacattttcgttattgttggaattggacctgtagatgtatcattcaac-attgatgcaacacatggtattattcgaatttctggtgcaata 38345956  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 293
Target Start/End: Original strand, 38358225 - 38358300
Alignment:
Q  217 aattattattggaattggatttgtagatgtatcctacaaccattgatgcaactcgtggtatcattcgaatttctggg 293  Q
    |||||||| | |||| ||||||| ||||||||||||| | |||| ||||||||| ||||||||||| ||||| ||||    
T  38358225 aattattagtagaatcggatttgcagatgtatcctac-atcattaatgcaactcatggtatcattcaaatttatggg 38358300  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 12633032 - 12633083
Alignment:
Q  1 atttattgtaggaggcttagaattttgacacattggattggggcaaattttt 52  Q
    |||||||||||| ||||||||||||||||||||| |||||  ||||||||||    
T  12633032 atttattgtaggtggcttagaattttgacacattagattgaagcaaattttt 12633083  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 41
Target Start/End: Complemental strand, 2775840 - 2775810
Alignment:
Q  11 ggaggcttagaattttgacacattggattgg 41  Q
    |||||||||||||||||||||||||||||||    
T  2775840 ggaggcttagaattttgacacattggattgg 2775810  T

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