View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7049_low_10 (Length: 238)

Name: NF7049_low_10
Description: NF7049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7049_low_10
NF7049_low_10
[»] chr3 (15 HSPs)
chr3 (1-223)||(5297644-5297866)
chr3 (35-175)||(5279607-5279747)
chr3 (61-196)||(7586836-7586971)
chr3 (75-195)||(8470545-8470665)
chr3 (75-196)||(6839834-6839955)
chr3 (45-175)||(5262741-5262871)
chr3 (71-193)||(6592270-6592392)
chr3 (71-193)||(8569887-8570009)
chr3 (75-195)||(5267043-5267163)
chr3 (75-152)||(4389905-4389982)
chr3 (75-152)||(5249156-5249233)
chr3 (82-183)||(6258203-6258304)
chr3 (25-98)||(6916045-6916118)
chr3 (79-183)||(6264683-6264787)
chr3 (119-183)||(13271480-13271544)
[»] scaffold1643 (1 HSPs)
scaffold1643 (76-221)||(1147-1292)
[»] chr7 (1 HSPs)
chr7 (75-196)||(6574249-6574370)
[»] chr1 (1 HSPs)
chr1 (80-180)||(35141299-35141399)


Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 5297644 - 5297866
Alignment:
Q  1 taagaaaacatcatacgtaattcgtctaaatttttcttattttgcaaattagctttcactgcatccacacgatcaatgacattttccaaccctgaaatac 100  Q
    ||||||||||||||| ||||||||||||||| |||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5297644 taagaaaacatcatatgtaattcgtctaaatctttctttttttgcaaatttgctgtcactgcatccacacgatcaatgacattttccaaccctgaaatac 5297743  T
Q  101 gaagtgtaccttgaagacggttgagctttgccaactcattaatatcagaccctttttggtctcccacaacaaaatcagtcagcgtttgaagatggtgtaa 200  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5297744 gaagtgtaccttgaagatggttgagttttgccaactcattaatatcagaccctttttggtctcccacaacaaaatcagtcagcgtttgaagatggtgtaa 5297843  T
Q  201 tcttcctatatgctctggcatct 223  Q
    |||||||||||||||||||||||    
T  5297844 tcttcctatatgctctggcatct 5297866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 35 - 175
Target Start/End: Original strand, 5279607 - 5279747
Alignment:
Q  35 tcttattttgcaaattagctttcactgcatccacacgatcaatgacattttccaaccctgaaatacgaagtgtaccttgaagacggttgagctttgccaa 134  Q
    ||||||||| |||||| |||| ||| |||||  |||||||| ||||||||||||||  |||||||| |||||| ||| ||||| ||||||| ||| ||||    
T  5279607 tcttatttttcaaatttgcttccacagcatctgcacgatcagtgacattttccaactgtgaaatacaaagtgttcctcgaagatggttgagtttttccaa 5279706  T
Q  135 ctcattaatatcagaccctttttggtctcccacaacaaaat 175  Q
    ||| ||||||| ||||||  | || ||||||||||||||||    
T  5279707 ctccttaatattagacccactatgctctcccacaacaaaat 5279747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 61 - 196
Target Start/End: Original strand, 7586836 - 7586971
Alignment:
Q  61 gcatccacacgatcaatgacattttccaaccctgaaatacgaagtgtaccttgaagacggttgagctttgccaactcattaatatcagaccctttttggt 160  Q
    ||||||||  |||| ||||||| ||||| ||||||||||| ||||   ||||||||| | ||||| ||  ||||||| ||||||||||||||  | || |    
T  7586836 gcatccacgggatcgatgacatgttccatccctgaaatacaaagttccccttgaagatgattgagattacccaactccttaatatcagacccactctgtt 7586935  T
Q  161 ctcccacaacaaaatcagtcagcgtttgaagatggt 196  Q
    ||||||||||||||||| ||||||||||||||||||    
T  7586936 ctcccacaacaaaatcactcagcgtttgaagatggt 7586971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 195
Target Start/End: Original strand, 8470545 - 8470665
Alignment:
Q  75 aatgacattttccaaccctgaaatacgaagtgtaccttgaagacggttgagctttgccaactcattaatatcagaccctttttggtctcccacaacaaaa 174  Q
    |||||||| ||||||||||||||||| |||| | ||| ||||||| ||||||||  ||||||| | ||||| |||||| || |  ||| |||||||||||    
T  8470545 aatgacatgttccaaccctgaaatacaaagtttccctcgaagacgattgagcttacccaactcctgaatattagacccattctcctcttccacaacaaaa 8470644  T
Q  175 tcagtcagcgtttgaagatgg 195  Q
    | | |||||||||||||||||    
T  8470645 tgactcagcgtttgaagatgg 8470665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 75 - 196
Target Start/End: Complemental strand, 6839955 - 6839834
Alignment:
Q  75 aatgacattttccaaccctgaaatacgaagtgtaccttgaagacggttgagctttgccaactcattaatatcagaccctttttggtctcccacaacaaaa 174  Q
    |||||||| |||||| |||||||||| |||| | ||||||||| | ||||| ||  |||||||  |||||||||||||  | || |||||||||||||||    
T  6839955 aatgacatgttccaatcctgaaatacaaagtttcccttgaagatgattgagattacccaactccgtaatatcagacccactctgttctcccacaacaaaa 6839856  T
Q  175 tcagtcagcgtttgaagatggt 196  Q
    | | |||| |||||||||||||    
T  6839855 tgactcagtgtttgaagatggt 6839834  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 175
Target Start/End: Original strand, 5262741 - 5262871
Alignment:
Q  45 caaattagctttcactgcatccacacgatcaatgacattttccaaccctgaaatacgaagtgtaccttgaagacggttgagctttgccaactcattaata 144  Q
    |||||| |||| ||| |||||  |||||||| ||||||||||||||  |||||||| ||||||  || ||||| ||||||| ||| |||| || ||||||    
T  5262741 caaatttgcttccacagcatctgcacgatcagtgacattttccaactgtgaaatacaaagtgtttctcgaagatggttgagtttttccaattccttaata 5262840  T
Q  145 tcagaccctttttggtctcccacaacaaaat 175  Q
    ||| ||||  | || ||||||||||||||||    
T  5262841 tcatacccactatgctctcccacaacaaaat 5262871  T

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Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 193
Target Start/End: Complemental strand, 6592392 - 6592270
Alignment:
Q  71 gatcaatgacattttccaaccctgaaatacgaagtgtaccttgaagacggttgagctttgccaactcattaatatcagaccctttttggtctcccacaac 170  Q
    |||||||||||||||||| ||||||||| |||||  | ||||||||  |||| || ||| ||||||  ||||||||| ||||    || |||||||||||    
T  6592392 gatcaatgacattttccatccctgaaattcgaaggcttccttgaagttggtttagttttcccaactgcttaatatcaaacccacgctgctctcccacaac 6592293  T
Q  171 aaaatcagtcagcgtttgaagat 193  Q
    ||||||||||||| ||| |||||    
T  6592292 aaaatcagtcagcatttcaagat 6592270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 193
Target Start/End: Complemental strand, 8570009 - 8569887
Alignment:
Q  71 gatcaatgacattttccaaccctgaaatacgaagtgtaccttgaagacggttgagctttgccaactcattaatatcagaccctttttggtctcccacaac 170  Q
    ||||||| ||||||||||| |||||||||| |||| | ||| ||||| | ||||| ||  ||||||| ||||||||||| ||  | ||  ||||||||||    
T  8570009 gatcaattacattttccaaacctgaaatacaaagtttccctcgaagatgattgagattatccaactccttaatatcagatccactctgcactcccacaac 8569910  T
Q  171 aaaatcagtcagcgtttgaagat 193  Q
    |||||||||||  ||||||||||    
T  8569909 aaaatcagtcaaggtttgaagat 8569887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 195
Target Start/End: Original strand, 5267043 - 5267163
Alignment:
Q  75 aatgacattttccaaccctgaaatacgaagtgtaccttgaagacggttgagctttgccaactcattaatatcagaccctttttggtctcccacaacaaaa 174  Q
    |||||||||||||||||||||||||| |||| | ||||||||  |||| || |  |||||||| |||||| ||||||| |  |  | | ||||||||||     
T  5267043 aatgacattttccaaccctgaaatacaaagtttcccttgaagctggttaagttccgccaactccttaataccagacccatgctcctttaccacaacaaat 5267142  T
Q  175 tcagtcagcgtttgaagatgg 195  Q
    | ||||||||| |||||||||    
T  5267143 ttagtcagcgtctgaagatgg 5267163  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 4389982 - 4389905
Alignment:
Q  75 aatgacattttccaaccctgaaatacgaagtgtaccttgaagacggttgagctttgccaactcattaatatcagaccc 152  Q
    |||||||||||| ||||||||||||| |||| | ||||||||  ||||||| |  | |||||| ||||||||||||||    
T  4389982 aatgacattttctaaccctgaaatacaaagtttcccttgaagctggttgagttccgtcaactccttaatatcagaccc 4389905  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 152
Target Start/End: Original strand, 5249156 - 5249233
Alignment:
Q  75 aatgacattttccaaccctgaaatacgaagtgtaccttgaagacggttgagctttgccaactcattaatatcagaccc 152  Q
    |||||||||||| ||||||||||||| |||| | ||||||||  ||||||| |  | |||||| ||||||||| ||||    
T  5249156 aatgacattttctaaccctgaaatacaaagtttcccttgaagctggttgagttccgtcaactccttaatatcataccc 5249233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 183
Target Start/End: Original strand, 6258203 - 6258304
Alignment:
Q  82 ttttccaaccctgaaatacgaagtgtaccttgaagacggttgagctttgccaactcattaatatcagaccctttttggtctcccacaacaaaatcagtca 181  Q
    |||| |||||||||||| |||||  | |||| |||  ||||||| | ||||||||  ||||||||| | || | ||| ||| ||||||||||||||||||    
T  6258203 tttttcaaccctgaaattcgaagccttcctttaaggtggttgagttctgccaactgcttaatatcatatccatgttgctcttccacaacaaaatcagtca 6258302  T
Q  182 gc 183  Q
    ||    
T  6258303 gc 6258304  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 6916045 - 6916118
Alignment:
Q  25 tctaaatttttcttattttgcaaattagctttcactgcatccacacgatcaatgacattttccaaccctgaaat 98  Q
    ||||||| |||||||| || |||||| |||  ||| |||||  || ||||||||||||||| ||||||||||||    
T  6916045 tctaaatgtttcttatctttcaaatttgctgccacagcatctgcaggatcaatgacatttttcaaccctgaaat 6916118  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 183
Target Start/End: Original strand, 6264683 - 6264787
Alignment:
Q  79 acattttccaaccctgaaatacgaagtgtaccttgaagacggttgagctttgccaactcattaatatcagaccctttttggtctcccacaacaaaatcag 178  Q
    ||||||| ||||||||||||  ||||  | |||| |||  ||||||| | ||||||||  ||||||||| | || | ||| ||||||||||||||||| |    
T  6264683 acatttttcaaccctgaaatttgaagccttcctttaaggtggttgagttctgccaactgcttaatatcaaatccatgttgctctcccacaacaaaatcgg 6264782  T
Q  179 tcagc 183  Q
    |||||    
T  6264783 tcagc 6264787  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 13271544 - 13271480
Alignment:
Q  119 ggttgagctttgccaactcattaatatcagaccctttttggtctcccacaacaaaatcagtcagc 183  Q
    ||||||| | ||||||||  ||||||||| | || | ||| ||||||||||||||||||||||||    
T  13271544 ggttgagttctgccaactgcttaatatcatatccatgttgctctcccacaacaaaatcagtcagc 13271480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1643 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold1643
Description:

Target: scaffold1643; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 76 - 221
Target Start/End: Original strand, 1147 - 1292
Alignment:
Q  76 atgacattttccaaccctgaaatacgaagtgtaccttgaagacggttgagctttgccaactcattaatatcagaccctttttggtctcccacaacaaaat 175  Q
    ||||||| |||||| |||||||||| |||| | ||||||||||| ||||| ||  ||||||| | ||||| |||||| || |  |||||||||||||| |    
T  1147 atgacatgttccaatcctgaaatacaaagtttcccttgaagacgattgagattacccaactcctgaatattagacccattctcctctcccacaacaaatt 1246  T
Q  176 cagtcagcgtttgaagatggtgtaatcttcctatatgctctggcat 221  Q
     | |||| ||||||||||||| ||  || ||||| |||| ||||||    
T  1247 tactcagtgtttgaagatggtttagactccctatctgctttggcat 1292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 196
Target Start/End: Complemental strand, 6574370 - 6574249
Alignment:
Q  75 aatgacattttccaaccctgaaatacgaagtgtaccttgaagacggttgagctttgccaactcattaatatcagaccctttttggtctcccacaacaaaa 174  Q
    |||||||| |||||||||||||||  |||||   ||||||||| | || || ||  ||||||| |||||||||||||| || |  |||||||| ||||||    
T  6574370 aatgacatgttccaaccctgaaatgtgaagtcctccttgaagatgattaagattatccaactccttaatatcagacccattcttctctcccactacaaaa 6574271  T
Q  175 tcagtcagcgtttgaagatggt 196  Q
    | |||||| || ||||||||||    
T  6574270 ttagtcagtgtctgaagatggt 6574249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 180
Target Start/End: Complemental strand, 35141399 - 35141299
Alignment:
Q  80 cattttccaaccctgaaatacgaagtgtaccttgaagacggttgagctttgccaactcattaatatcagaccctttttggtctcccacaacaaaatcagt 179  Q
    |||||| |||||||||||| |||||  | |||| |||  ||||||| | ||||||||  ||||||||| | || | ||| |||||||||| |||||||||    
T  35141399 catttttcaaccctgaaattcgaagccttccttcaaggtggttgagttctgccaactgcttaatatcaaatccatgttgctctcccacaataaaatcagt 35141300  T
Q  180 c 180  Q
    |    
T  35141299 c 35141299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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