View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7049_low_13 (Length: 227)
Name: NF7049_low_13
Description: NF7049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7049_low_13 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 434162 - 434380
Alignment:
| Q |
1 |
cagtttgaacgaacacggaaaaatgttttcaatttaacaaccaaaaacaatccttgactttgggttttttcactgtcttaatcataaatctgtcatcttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
434162 |
cagtttgaacgaacacggaaaaatgttttcaatttaacaaccaaaaacaaaccttgacttcggattttttgactgtcttaatcataaatctgtcatcttg |
434261 |
T |
|
| Q |
101 |
ggtcaagtggaagaaaa-tccacttttgccatgagatgaaagctccctgagggcagcatttccacaaatagctaacatgtaatcatcaggatccaccgga |
199 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
434262 |
ggtcaagtggaagaaaattccacttttgccaggagattaaagctccctgagggaagcatttccacaaatagctaacatgta---------atccaccgga |
434352 |
T |
|
| Q |
200 |
aatggcttcctcaattgtaaaagaactt |
227 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
434353 |
aatggcttcctcaattgtaaaagaactt |
434380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 2 - 217
Target Start/End: Complemental strand, 32938610 - 32938394
Alignment:
| Q |
2 |
agtttgaacgaacacggaaaaatgttttcaatttaacaaccaaaaacaatccttgactttgggttttttcactgtcttaatcataaatctgtcatcttgg |
101 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||| || ||||||||| ||||| ||||||||||| ||||||||| |
|
|
| T |
32938610 |
agtttgaacaaacatggaaaaatgttttcaatttaacaaccaaaaacaaaccttgacttcggattttttcaccgtctttatcataaatctatcatcttgg |
32938511 |
T |
|
| Q |
102 |
gtcaagtggaagaaaat-ccacttttgccatgagatgaaagctccctgagggcagcatttccacaaatagctaacatgtaatcatcaggatccaccggaa |
200 |
Q |
| |
|
||||||| |||||| | |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
32938510 |
gtcaagtagaagaagcttccacttttgccaggagatgaaagctccctgagggcagcatttccgcaaatagctaacatgtaatcagcaggatccacctgaa |
32938411 |
T |
|
| Q |
201 |
atggcttcctcaattgt |
217 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
32938410 |
atcgcttcctcaattgt |
32938394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 213
Target Start/End: Complemental strand, 24524457 - 24524295
Alignment:
| Q |
52 |
ccttgactttgggttttttcactgtcttaatcataaatctgtcatcttgggtcaagtggaaga-aaatccacttttgccatgagatgaaagctccctgag |
150 |
Q |
| |
|
||||||||| | ||| ||||||||||||||||| |||||||||||||||||||||| ||| | | ||| ||||| || |||| ||||| || ||||| |
|
|
| T |
24524457 |
ccttgacttcagatttcttcactgtcttaatcatgaatctgtcatcttgggtcaagtagaaaacacttccgcttttcccgggagaggaaagttctctgag |
24524358 |
T |
|
| Q |
151 |
ggcagcatttccacaaatagctaacatgtaatcatcaggatccaccggaaatggcttcctcaa |
213 |
Q |
| |
|
||| ||| ||||| ||||| ||||| |||||| ||||||| ||| |||| |||||||||| |
|
|
| T |
24524357 |
agcatcatccccacatatagccaacatataatcagcaggatcaacctgaaacagcttcctcaa |
24524295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University