View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7049_low_3 (Length: 346)
Name: NF7049_low_3
Description: NF7049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7049_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 20 - 329
Target Start/End: Original strand, 26545114 - 26545423
Alignment:
| Q |
20 |
aactgaatgctgagaatttgagtgtgaaatgtgatctaagagtgagttgaatgttgtactactaactaggtggttttattggcttgtgagccagagcctt |
119 |
Q |
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| T |
26545114 |
aactgaatgctgagaatttgagtgtgaaatgtgatctaagagtgagttgaatgttgtactactaactaggtggttttattggcttgtgagccagagcctt |
26545213 |
T |
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| Q |
120 |
cacgagagtgatgggaaaaggaaaaatcttatggttttggtatatcaatttccaaaaactataaccaagacaagaatataaaatgatgtaataatgtgga |
219 |
Q |
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| T |
26545214 |
cacgagagtgatgggaaaaggaaaaatcttatggttttggtatatcaatttccaaaaactatagccaagacaagaatataaaatgatgtaataatgtgga |
26545313 |
T |
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| Q |
220 |
tttgatactatagtctataatatcatttctcacggtccatgtttctaggttcctcttatacacggagagtccttgaggaacatacacctgtaaacttcaa |
319 |
Q |
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| T |
26545314 |
tttgatactatagtctataatatcatttctcacggtccatgtttctaggttcctcttatacacggagagtccttgaggaacatacacctgtaaacttcaa |
26545413 |
T |
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| Q |
320 |
cttcaggcac |
329 |
Q |
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|||||||||| |
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| T |
26545414 |
cttcaggcac |
26545423 |
T |
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