View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7049_low_5 (Length: 309)
Name: NF7049_low_5
Description: NF7049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7049_low_5 |
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| [»] scaffold0046 (1 HSPs) |
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Alignment Details
Target: scaffold0046 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: scaffold0046
Description:
Target: scaffold0046; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 20 - 296
Target Start/End: Complemental strand, 76721 - 76445
Alignment:
| Q |
20 |
tctttttctatgtaagtgttttctccgcttgctattcaataatgatatataatctggtttttaattatggagtccatgcagcagaatttcgtcatggcag |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
76721 |
tctttttctatgtaagtgttttctccgcttgctattcaataatgatatataatctggtttttaattatggagtccatgcagcagaatttcgtcatggcag |
76622 |
T |
|
| Q |
120 |
aagaactcatatatannnnnnncttgcatgtaattgtgccattcctttaattgtttgtttttacgctgcttaagagcaggatatcaatgcttacttatgc |
219 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
76621 |
aagaactcatatatatttttttcttgcatgtaattgtgccattcctttaattgtctgtttttacgctgcttaagagcaggatatcaatgcttacttatgc |
76522 |
T |
|
| Q |
220 |
aagaatgtctgttgtgttgatttatccaagttcattgtttgaatgaatgtgttaacgagaatatagttcacacaggt |
296 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
76521 |
aagaatgtctgttgtgttaatttatccaagttcattgtttgaatgaatgtgttaacgagaatatagttcacacaggt |
76445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 20 - 296
Target Start/End: Complemental strand, 24967400 - 24967124
Alignment:
| Q |
20 |
tctttttctatgtaagtgttttctccgcttgctattcaataatgatatataatctggtttttaattatggagtccatgcagcagaatttcgtcatggcag |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24967400 |
tctttttctatgtaagtgttttctccgcttgctattcaataatgatatataatctggtttttaattatggagtccatgcagcagaatttcgtcatggcag |
24967301 |
T |
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| Q |
120 |
aagaactcatatatannnnnnncttgcatgtaattgtgccattcctttaattgtttgtttttacgctgcttaagagcaggatatcaatgcttacttatgc |
219 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24967300 |
aagaactcatatatatttttttcttgcatgtaattgtgccattcctttaattgtctgtttttacgctgcttaagagcaggatatcaatgcttacttatgc |
24967201 |
T |
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| Q |
220 |
aagaatgtctgttgtgttgatttatccaagttcattgtttgaatgaatgtgttaacgagaatatagttcacacaggt |
296 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24967200 |
aagaatgtctgttgtgttaatttatccaagttcattgtttgaatgaatgtgttaacgagaatatagttcacacaggt |
24967124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 34735417 - 34735139
Alignment:
| Q |
18 |
catctttttctatgtaagtgttttctccgcttgctattcaataatgatatataatctggtttttaattatggagtccatgcagcagaatttcgtcatggc |
117 |
Q |
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|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34735417 |
catctttttctatgtaagtgctttctccgcttgctattcaataatgatatataatctggtttttaattatggagtccatgcagcagaatttcgtcatggc |
34735318 |
T |
|
| Q |
118 |
agaagaactcatatatannnnnnncttgcatgtaattgtgccattcctttaattgtttgtttttacgctgcttaagagcaggatatcaatgcttacttat |
217 |
Q |
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|
|||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
34735317 |
agaagaactcgtatatttttttttcttgcatgtaattgtgccattcctttaattgtctgtttttacgctacttaagagcaggatatcaatgcttacttat |
34735218 |
T |
|
| Q |
218 |
gcaagaatgtctgttgtgttgatttatccaagttcattgtttgaatgaatgtgttaacgagaatatagttcacacaggt |
296 |
Q |
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|
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
34735217 |
gcaagaatgtccgttgtgttgatttatccaagttcattgtttgaatgaatgttttaacgagaatatagtgcacacaggt |
34735139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 296
Target Start/End: Original strand, 28468316 - 28468595
Alignment:
| Q |
18 |
catctttttctatgtaagtgttttctccgcttgctattcaataatgatatataatctggtttttaattatggagtccatgcagcagaatttcgtcatggc |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28468316 |
catctttttctatgtaagtgctttctccgcttgctattcaataatgatatataatctggtttttaattatggagtccatgcagcagaatttcgtcatggc |
28468415 |
T |
|
| Q |
118 |
agaagaactcatat-atannnnnnncttgcatgtaattgtgccattcctttaattgtttgtttttacgctgcttaagagcaggatatcaatgcttactta |
216 |
Q |
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|||||||||| ||| || |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
28468416 |
agaagaactcgtattatttttttttcttgcatgtaattgtgccattcctttaattgtctgtttttacgctacttaagagcaggatatcaatgcttactta |
28468515 |
T |
|
| Q |
217 |
tgcaagaatgtctgttgtgttgatttatccaagttcattgtttgaatgaatgtgttaacgagaatatagttcacacaggt |
296 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
28468516 |
tgcaagaatgtccgttgtgttgatttatccaagttcattgtttgaatgaatgttttaacgagaatatagtgcacacaggt |
28468595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 29319307 - 29319028
Alignment:
| Q |
18 |
catctttttctatgtaagtgttttctccgcttgctattcaataatgatatataatctggtttttaattatggagtccatgcagcagaatttcgtcatggc |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
29319307 |
catctttttctatgtaagtgctttctccacttgctattcaataatgatatataatctggattttaattatggagtccatgcagcagaatttcgtcttggc |
29319208 |
T |
|
| Q |
118 |
agaagaactcatatatannnnnnn-cttgcatgtaattgtgccattcctttaattgtttgtttttacgctgcttaagagcaggatatcaatgcttactta |
216 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||| || |||||| ||| |||||||||||||||| | |
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|
| T |
29319207 |
agaagaactcatatatattttttttcttgcatgtaattgtgccattcctttaattgtctatttttacactacttaagggcatgatatcaatgcttactaa |
29319108 |
T |
|
| Q |
217 |
tgcaagaatgtctgttgtgttgatttatccaagttcattgtttgaatgaatgtgttaacgagaatatagttcacacaggt |
296 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||| |
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|
| T |
29319107 |
tgcaagaatgtccgttgtgttgatttatccaagatcattgtttgaatgaatgtgttgacgagaatatagtgcacacaggt |
29319028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 14704736 - 14704797
Alignment:
| Q |
57 |
aataatgatatataatctggtttttaattatggagtccatgcagcagaatttcgtcatggca |
118 |
Q |
| |
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|||| |||||||| || |||| |||||| ||||||||||||| |||||||||| | |||||| |
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| T |
14704736 |
aatattgatatatgatgtggtctttaataatggagtccatgctgcagaatttcattatggca |
14704797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 46229424 - 46229363
Alignment:
| Q |
57 |
aataatgatatataatctggtttttaattatggagtccatgcagcagaatttcgtcatggca |
118 |
Q |
| |
|
|||| |||||||| || |||| |||||| ||||||||||||| |||||||||| | |||||| |
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|
| T |
46229424 |
aatattgatatatgatgtggtctttaataatggagtccatgctgcagaatttcattatggca |
46229363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 3505989 - 3506050
Alignment:
| Q |
57 |
aataatgatatataatctggtttttaattatggagtccatgcagcagaatttcgtcatggca |
118 |
Q |
| |
|
|||| |||||||| || |||| |||||| ||||||||||||| |||||||||| | |||||| |
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|
| T |
3505989 |
aatattgatatatgatgtggtctttaataatggagtccatgctgcagaatttcattatggca |
3506050 |
T |
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