View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7049_low_6 (Length: 305)
Name: NF7049_low_6
Description: NF7049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7049_low_6 |
 | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
| [»] scaffold1749 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 13 - 286
Target Start/End: Original strand, 31560650 - 31560923
Alignment:
| Q |
13 |
gagatgaaaaagattgttcggacgataatgaatatattgaagtacaaatcttcatgtgtttcaaaagatttagttaggattaattctcctatagaagcat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
31560650 |
gagatgaaaaagattgttcggacgataatgaatatattgaagtacaaatcttcatgtgtttcaaaagatttagttgggattaattctcctatagaagcat |
31560749 |
T |
|
| Q |
113 |
tacaaaatcatttgcttttggactcggatgatggtgctcgtgttataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttata |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| || |
|
|
| T |
31560750 |
tacaaaatcatttgcttttggactcggatgatggtgttcgtgttataggaatttgtggaatgggaggaatagggaagacagcccttgctatgactttgta |
31560849 |
T |
|
| Q |
213 |
tgaccaaatatctcatcgatttagtgcaaattgttttattgatgatgtaagcaaaatatatagattatgtgatg |
286 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| | |||||| |
|
|
| T |
31560850 |
tggccaaatatctcatcgatttagtgcatcctgttttattgatgatgtaagcaaaatttatagatcaggtgatg |
31560923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 286
Target Start/End: Complemental strand, 33390313 - 33390038
Alignment:
| Q |
11 |
gtgagatgaaaaagattgttcggacgataatgaatatattgaagtacaaatcttcatgtgtttcaaaagatttagttaggattaattctcctatagaagc |
110 |
Q |
| |
|
||||||| ||||||||||||| | |||||||||||||||| ||| ||| |||||||||||||| ||||||||||| ||||| |||||||||||||||| |
|
|
| T |
33390313 |
gtgagattaaaaagattgttcaaaggataatgaatatattggagtgcaattcttcatgtgtttcgaaagatttagtagggattgattctcctatagaagc |
33390214 |
T |
|
| Q |
111 |
attacaaaatcatttgcttttggactcggatgatggtgctcgtgttataggaatttgtggaatgggaggaatagggaagacaacccttgccatgacttta |
210 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33390213 |
attacaaaatcatttgcttttggactcagttgatggtgttcatgctataggaatttgtggaatgggaggaatagggaagacaacccttgccatgacttta |
33390114 |
T |
|
| Q |
211 |
tatgaccaaatatctcatcgatttagtgcaaattgttttattgatgatgtaagcaaaatatatagattatgtgatg |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33390113 |
tatgaccaaatatctcatcgatttagtgcaaattgttttattgatgatgtaagcaaaatatatagattatgtgatg |
33390038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 13 - 286
Target Start/End: Complemental strand, 33402853 - 33402580
Alignment:
| Q |
13 |
gagatgaaaaagattgttcggacgataatgaatatattgaagtacaaatcttcatgtgtttcaaaagatttagttaggattaattctcctatagaagcat |
112 |
Q |
| |
|
||||| ||||||||||||| | |||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
33402853 |
gagattaaaaagattgttcaaaagataatgaatatattggagtgcaaatcttcatgtgtttcaaaagatttagttgggattgattctcctatagaagcat |
33402754 |
T |
|
| Q |
113 |
tacaaaatcatttgcttttggactcggatgatggtgctcgtgttataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttata |
212 |
Q |
| |
|
|| ||||||||||| ||||||||| || |||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
33402753 |
taaaaaatcatttggttttggacttggttgatggtgttcgtgctataagaatttgtggaatgggaggaatagggaagacaacccttgctatgaatttata |
33402654 |
T |
|
| Q |
213 |
tgaccaaatatctcatcgatttagtgcaaattgttttattgatgatgtaagcaaaatatatagattatgtgatg |
286 |
Q |
| |
|
|| |||||| |||||||||||||||||| ||||| |||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
33402653 |
tggccaaatctctcatcgatttagtgcatcctgtttcattgatgatgtaagcaaaatttatagattatatgatg |
33402580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 13 - 286
Target Start/End: Original strand, 31566969 - 31567242
Alignment:
| Q |
13 |
gagatgaaaaagattgttcggacgataatgaatatattgaagtacaaatcttcatgtgtttcaaaagatttagttaggattaattctcctatagaagcat |
112 |
Q |
| |
|
||||| |||||||||| || || ||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||| | |
|
|
| T |
31566969 |
gagattaaaaagattgctcaaacaataatgaatatattggagtgcaaatcttcatgtgtttcaaaagatttagttgggattgattctcctatagaagcgt |
31567068 |
T |
|
| Q |
113 |
tacaaaatcatttgcttttggactcggatgatggtgctcgtgttataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttata |
212 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||| |
|
|
| T |
31567069 |
tacaaaatcatttgcttttggactcgattgatggtgttcgtgctataggaatttgtggaatggggggaatagggaagacagcccttgctgagactttata |
31567168 |
T |
|
| Q |
213 |
tgaccaaatatctcatcgatttagtgcaaattgttttattgatgatgtaagcaaaatatatagattatgtgatg |
286 |
Q |
| |
|
|| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||| || ||||| |
|
|
| T |
31567169 |
tggccaaatatctcatcgatttagtgcatcttgttatattgatgatgtaagcaaaatttatagatcatatgatg |
31567242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 13 - 279
Target Start/End: Original strand, 33642443 - 33642709
Alignment:
| Q |
13 |
gagatgaaaaagattgttcggacgataatgaatatattgaagtacaaatcttcatgtgtttcaaaagatttagttaggattaattctcctatagaagcat |
112 |
Q |
| |
|
||||| ||||||||||||| | |||||| |||||||| ||| ||| |||| | |||||||||||||||||||| ||||| ||||||||||| |||||| |
|
|
| T |
33642443 |
gagattaaaaagattgttcaaaagataatcaatatattagagtgcaagtctttaagtgtttcaaaagatttagttgggattgattctcctataaaagcat |
33642542 |
T |
|
| Q |
113 |
tacaaaatcatttgcttttggactcggatgatggtgctcgtgttataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttata |
212 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| | | ||||||| |
|
|
| T |
33642543 |
tacaaaatcatttgcttttggactcagttgatggtgttcgtgctataggaatttgtggaatgggaggaatagggaagacaacccttgctacggctttata |
33642642 |
T |
|
| Q |
213 |
tgaccaaatatctcatcgatttagtgcaaattgttttattgatgatgtaagcaaaatatatagatta |
279 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33642643 |
tgaccaaatatctcatcgatttagtgcatcatgttttattgatgatgtaagcaaaatttatagatta |
33642709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 19 - 278
Target Start/End: Complemental strand, 9169006 - 9168748
Alignment:
| Q |
19 |
aaaaagattgttcggacgataatgaatatattgaagtacaaatcttcatgtgtttcaaaagatttagttaggattaattctcctatagaagcattacaaa |
118 |
Q |
| |
|
||||||||||| | | ||||||||| |||| || || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9169006 |
aaaaagattgtacaaaagataatgaacatatgga-gtgcaaatcttcatgtgtttcaaaagatttagttgggattaattctcctatagaagcattacaaa |
9168908 |
T |
|
| Q |
119 |
atcatttgcttttggactcggatgatggtgctcgtgttataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttatatgacca |
218 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||| |
|
|
| T |
9168907 |
atcatttgcttttggactcaattgatggtgttcgtgctataggaatttgtggaatgggaggaatagggaagacaactcttgcaatggttttatatgacca |
9168808 |
T |
|
| Q |
219 |
aatatctcatcgatttagtgcaaattgttttattgatgatgtaagcaaaatatatagatt |
278 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |||| ||||| |||||||| |
|
|
| T |
9168807 |
aatatctcatcgatttagtgcatcctgttttattgatgatataagtaaaatttatagatt |
9168748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 13 - 279
Target Start/End: Complemental strand, 33274031 - 33273765
Alignment:
| Q |
13 |
gagatgaaaaagattgttcggacgataatgaatatattgaagtacaaatcttcatgtgtttcaaaagatttagttaggattaattctcctatagaagcat |
112 |
Q |
| |
|
||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||| | |||| | || |
|
|
| T |
33274031 |
gagattaaaaagattgttcaaacgatcttgaatatattgaagtacaaatcttcatgtttttcaaaagatttagttgggatagattctcgtttagacggat |
33273932 |
T |
|
| Q |
113 |
tacaaaatcatttgcttttggactcggatgatggtgctcgtgttataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttata |
212 |
Q |
| |
|
||||||||||||| ||||||||||||| ||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
33273931 |
tacaaaatcatttacttttggactcggttgacagtgttcgtgctataggaatttgtggaatgggaggaatagggaagacaacccttgctatggctttata |
33273832 |
T |
|
| Q |
213 |
tgaccaaatatctcatcgatttagtgcaaattgttttattgatgatgtaagcaaaatatatagatta |
279 |
Q |
| |
|
||| |||||||||||||||||||||||| |||||||| ||||||||||||||||| |||| |||| |
|
|
| T |
33273831 |
tgatcaaatatctcatcgatttagtgcatcctgttttatagatgatgtaagcaaaatttataaatta |
33273765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 19 - 275
Target Start/End: Complemental strand, 33306719 - 33306463
Alignment:
| Q |
19 |
aaaaagattgttcggacgataatgaatatattgaagtacaaatcttcatgtgtttcaaaagatttagttaggattaattctcctatagaagcattacaaa |
118 |
Q |
| |
|
||||||||||||| | |||||||| ||||||| ||| ||||||||||| | ||||||||||||||||| ||||| |||||||||||||||||||| ||| |
|
|
| T |
33306719 |
aaaaagattgttcaaaagataatgagtatattggagtgcaaatcttcatatatttcaaaagatttagttgggattgattctcctatagaagcattaaaaa |
33306620 |
T |
|
| Q |
119 |
atcatttgcttttggactcggatgatggtgctcgtgttataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttatatgacca |
218 |
Q |
| |
|
||||||||||||||||||||| |||| ||| | ||| ||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
33306619 |
atcatttgcttttggactcggttgattgtgtttgtgctataggaatttctggaatgggaggaatagggaagacaacccttgctatggctttatatgacca |
33306520 |
T |
|
| Q |
219 |
aatatctcatcgatttagtgcaaattgttttattgatgatgtaagcaaaatatatag |
275 |
Q |
| |
|
|||||||||||||||||||||| || | |||||||||||||| |||||| ||||| |
|
|
| T |
33306519 |
aatatctcatcgatttagtgcatcctgctatattgatgatgtaaccaaaatttatag |
33306463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 23 - 279
Target Start/End: Complemental strand, 33059792 - 33059536
Alignment:
| Q |
23 |
agattgttcggacgataatgaatatattgaagtacaaatcttcatgtgtttcaaaagatttagttaggattaattctcctatagaagcattacaaaatca |
122 |
Q |
| |
|
||||||||| | |||||| ||||||||| | | ||||| ||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||| |
|
|
| T |
33059792 |
agattgttcaaaagataatcaatatattggaatgcaaatattcatgtgtttcaaaagatttagttgggattgattctcctatacaagcattacaaaatca |
33059693 |
T |
|
| Q |
123 |
tttgcttttggactcggatgatggtgctcgtgttataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttatatgaccaaata |
222 |
Q |
| |
|
|||||||||| |||| | |||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||| ||||||| |
|
|
| T |
33059692 |
tttgcttttgaactcagttgatggtgttcgtgctataggaatttgtggaatgggaggaatagggaaaacaacccttgctacgactttatatggccaaata |
33059593 |
T |
|
| Q |
223 |
tctcatcgatttagtgcaaattgttttattgatgatgtaagcaaaatatatagatta |
279 |
Q |
| |
|
||||||| |||||||||| |||||||||||| ||||||| |||||| ||| ||||| |
|
|
| T |
33059592 |
tctcatcaatttagtgcatcttgttttattgacgatgtaaccaaaatttatggatta |
33059536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 24 - 260
Target Start/End: Complemental strand, 33287770 - 33287534
Alignment:
| Q |
24 |
gattgttcggacgataatgaatatattgaagtacaaatcttcatgtgtttcaaaagatttagttaggattaattctcctatagaagcattacaaaatcat |
123 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||| |||| |
|
|
| T |
33287770 |
gattgttcagacgataatgaatatattggagtgcaaatcttcatgggtttcaaaagatttagttgcgattaattctcctatagaagccttacaaagtcat |
33287671 |
T |
|
| Q |
124 |
ttgcttttggactcggatgatggtgctcgtgttataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttatatgaccaaatat |
223 |
Q |
| |
|
|||| |||||| |||| |||||| | ||||| |||||||||||||||||||||||||||||||| ||||||||| | ||| |||||||||| ||||||| |
|
|
| T |
33287670 |
ttgcatttggattcggttgatggagttcgtgcaataggaatttgtggaatgggaggaatagggaaaacaaccctttctatggctttatatgatcaaatat |
33287571 |
T |
|
| Q |
224 |
ctcatcgatttagtgcaaattgttttattgatgatgt |
260 |
Q |
| |
|
| ||||||||||||| | |||||||||||| ||||| |
|
|
| T |
33287570 |
cccatcgatttagtggatcttgttttattgaagatgt |
33287534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 13 - 286
Target Start/End: Complemental strand, 33412192 - 33411919
Alignment:
| Q |
13 |
gagatgaaaaagattgttcggacgataatgaatatattgaagtacaaatcttcatgtgtttcaaaagatttagttaggattaattctcctatagaagcat |
112 |
Q |
| |
|
||||| ||||||||||||| | ||||||||||||||| | | |||||||||| ||||||||||||||||| |||| ||||||| ||||||| || |
|
|
| T |
33412192 |
gagattaaaaagattgttcaaaatataatgaatatattggattgtaaatcttcattcatttcaaaagatttagttgggataaattctcggatagaagtat |
33412093 |
T |
|
| Q |
113 |
tacaaaatcatttgcttttggactcggatgatggtgctcgtgttataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttata |
212 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||| | ||| ||| ||||||||||||||||| |||||||| |||||||||||||| ||||||||||| |
|
|
| T |
33412092 |
tacaaaatcatttacttttggactcggttgatggtgtttgtgctattggaatttgtggaatgggcggaataggaaagacaacccttgctatgactttata |
33411993 |
T |
|
| Q |
213 |
tgaccaaatatctcatcgatttagtgcaaattgttttattgatgatgtaagcaaaatatatagattatgtgatg |
286 |
Q |
| |
|
|| ||| |||||||||| |||||||||| ||||||||| || |||||||||||||| |||||||||| ||||| |
|
|
| T |
33411992 |
tggccagatatctcatcaatttagtgcatcttgttttatagacgatgtaagcaaaatttatagattatatgatg |
33411919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 36 - 262
Target Start/End: Complemental strand, 33360295 - 33360069
Alignment:
| Q |
36 |
gataatgaatatattgaagtacaaatcttcatgtgtttcaaaagatttagttaggattaattctcctatagaagcattacaaaatcatttgcttttggac |
135 |
Q |
| |
|
|||||| ||||||||| | | ||||| ||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
33360295 |
gataatcaatatattggaatgcaaatattcatgtgtttcaaaagatttagttgagattgattctcctatacaagcattacaaaatcatttgcttttgaac |
33360196 |
T |
|
| Q |
136 |
tcggatgatggtgctcgtgttataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttatatgaccaaatatctcatcgattta |
235 |
Q |
| |
|
|||| |||||||| ||||| |||||||||||||||||| |||||||| ||||| ||||||||||| | ||||||||||| |||||| ||||| | ||||| |
|
|
| T |
33360195 |
tcggttgatggtgttcgtgctataggaatttgtggaattggaggaattgggaaaacaacccttgctacgactttatatggccaaatctctcaccaattta |
33360096 |
T |
|
| Q |
236 |
gtgcaaattgttttattgatgatgtaa |
262 |
Q |
| |
|
||||| || ||||||||||||||||| |
|
|
| T |
33360095 |
gtgcatctttttttattgatgatgtaa |
33360069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 13 - 279
Target Start/End: Complemental strand, 33264888 - 33264622
Alignment:
| Q |
13 |
gagatgaaaaagattgttcggacgataatgaatatattgaagtacaaatcttcatgtgtttcaaaagatttagttaggattaattctcctatagaagcat |
112 |
Q |
| |
|
||||| ||||||||||||| | |||||||| || |||| | | |||||||||||||||||||||||| |||||| ||| |||||| | ||||||||| |
|
|
| T |
33264888 |
gagattaaaaagattgttcaaaagataatgagtacattggaatgcaaatcttcatgtgtttcaaaagacttagttgcgatagattctcgtttagaagcat |
33264789 |
T |
|
| Q |
113 |
tacaaaatcatttgcttttggactcggatgatggtgctcgtgttataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttata |
212 |
Q |
| |
|
||||||||||||| ||||||||| || |||||||| ||||| |||||||||||| || ||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
33264788 |
tacaaaatcatttccttttggacatggttgatggtgttcgtgctataggaatttgggggatgggaggaatagggaagacaacccttgctatgaatttata |
33264689 |
T |
|
| Q |
213 |
tgaccaaatatctcatcgatttagtgcaaattgttttattgatgatgtaagcaaaatatatagatta |
279 |
Q |
| |
|
|| |||||| | |||||||||| |||| ||||| |||||||||||||||||||| | ||||||| |
|
|
| T |
33264688 |
tggccaaatctgtcatcgatttgatgcatcctgtttcattgatgatgtaagcaaaatttttagatta |
33264622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 200
Target Start/End: Original strand, 13609093 - 13609164
Alignment:
| Q |
129 |
tttggactcggatgatggtgctcgtgttataggaatttgtggaatgggaggaatagggaagacaacccttgc |
200 |
Q |
| |
|
||||||||| ||||||| || ||| ||| |||| |||||||||||||| |||||||| |||||||| ||||| |
|
|
| T |
13609093 |
tttggactcagatgatgatgttcgagttgtagggatttgtggaatgggcggaataggaaagacaactcttgc |
13609164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 13 - 279
Target Start/End: Original strand, 17438669 - 17438935
Alignment:
| Q |
13 |
gagatgaaaaagattgttcggacgataatgaatatattgaagtacaaatcttcatgtgtttcaaaagatttagttaggattaattctcctatagaagcat |
112 |
Q |
| |
|
||||| ||||||||||||| | |||||||||||||||| | | ||||||||||||| |||||||||||||||| |||| ||||||| ||||||||||| |
|
|
| T |
17438669 |
gagattaaaaagattgttcaaaagataatgaatatattggaatgcaaatcttcatgtaattcaaaagatttagttgggataaattctcgtatagaagcat |
17438768 |
T |
|
| Q |
113 |
tacaaaatcatttgcttttggactcggatgatggtgctcgtgttataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttata |
212 |
Q |
| |
|
|| |||||||||| ||||||||||||| |||||||| ||||| |||||||||||| || ||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
17438769 |
taaaaaatcatttacttttggactcggttgatggtgttcgtgctataggaatttgggggatgggaggaatagggaagacaacccttgctttggatttata |
17438868 |
T |
|
| Q |
213 |
tgaccaaatatctcatcgatttagtgcaaattgttttattgatgatgtaagcaaaatatatagatta |
279 |
Q |
| |
|
|| |||||| |||||||||||| |||| |||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
17438869 |
tggccaaatctctcatcgatttgatgcatcttgtttcattgatgatgtaagcaaaatttatagatta |
17438935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 20 - 279
Target Start/End: Complemental strand, 8992 - 8733
Alignment:
| Q |
20 |
aaaagattgttcggacgataatgaatatattgaagtacaaatcttcatgtgtttcaaaagatttagttaggattaattctcctatagaagcattacaaaa |
119 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||| ||||||||||| |||||||||||||||||| |||| ||||||| || |||||||||| || | |
|
|
| T |
8992 |
aaaagattgttcaaacgatcttgaatatattgaagtgcaaatcttcattcgtttcaaaagatttagttgggataaattctcgtacagaagcattaaaaca |
8893 |
T |
|
| Q |
120 |
tcatttgcttttggactcggatgatggtgctcgtgttataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttatatgaccaa |
219 |
Q |
| |
|
||| || |||||| | |||| |||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||| |||| |||||||| |||| |
|
|
| T |
8892 |
tcagttacttttgaattcggttgatggtgttcgtgttataggaatttgggggatgggaggaatagggaagacaacccttgctatgaatttatatggccaa |
8793 |
T |
|
| Q |
220 |
atatctcatcgatttagtgcaaattgttttattgatgatgtaagcaaaatatatagatta |
279 |
Q |
| |
|
|| | |||||||||| |||| ||||| |||||||||||||||||||| | ||||||| |
|
|
| T |
8792 |
atctgtcatcgatttgatgcatcctgtttcattgatgatgtaagcaaaatttttagatta |
8733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1749 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: scaffold1749
Description:
Target: scaffold1749; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 231 - 17
Alignment:
| Q |
20 |
aaaagattgttcggacgataatgaatatattgaagtacaaatcttcatgtgtttcaaaagatttagttaggattaattctcctatagaagcattacaaaa |
119 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||| ||||||||||| |||||||||||||||||| |||| ||||||| || |||||||||| || | |
|
|
| T |
231 |
aaaagattgttcaaacgatcttgaatatattgaagtgcaaatcttcattcgtttcaaaagatttagttgggataaattctcgtacagaagcattaaaaca |
132 |
T |
|
| Q |
120 |
tcatttgcttttggactcggatgatggtgctcgtgttataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttatatgaccaa |
219 |
Q |
| |
|
||| || |||||| | |||| |||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||| |||| |||||||| |||| |
|
|
| T |
131 |
tcagttacttttgaattcggttgatggtgttcgtgttataggaatttgggggatgggaggaatagggaagacaacccttgctatgaatttatatggccaa |
32 |
T |
|
| Q |
220 |
atatctcatcgattt |
234 |
Q |
| |
|
|| | |||||||||| |
|
|
| T |
31 |
atctgtcatcgattt |
17 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 60 - 279
Target Start/End: Original strand, 31476862 - 31477081
Alignment:
| Q |
60 |
atcttcatgtgtttcaaaagatttagttaggattaattctcctatagaagcattacaaaatcatttgcttttggactcggatgatggtgctcgtgttata |
159 |
Q |
| |
|
||||||| ||| |||||| ||||||||| |||| ||||||||| | ||| |||| |||| | ||| ||||||||||| | ||||| || || |||| || |
|
|
| T |
31476862 |
atcttcaagtgcttcaaacgatttagttgggatggattctcctagacaagaattagaaaagcttttacttttggactctgttgatgatgttcatgttgta |
31476961 |
T |
|
| Q |
160 |
ggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttatatgaccaaatatctcatcgatttagtgcaaattgttttattgatgatg |
259 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||| |||| | ||||||| ||| ||||||| |||| ||||| |||||||||||||||| |
|
|
| T |
31476962 |
ggaatttgtgggatgggtggaatagggaagacaacccttggcatggttctatatgatagaatttctcatcaatttggtgcatgctgttttattgatgatg |
31477061 |
T |
|
| Q |
260 |
taagcaaaatatatagatta |
279 |
Q |
| |
|
|||||||||| | ||||||| |
|
|
| T |
31477062 |
taagcaaaatgtttagatta |
31477081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 279
Target Start/End: Original strand, 31496768 - 31497034
Alignment:
| Q |
13 |
gagatgaaaaagattgttcggacgataatgaatatattgaagtacaaatcttcatgtgtttcaaaagatttagttaggattaattctcctatagaagcat |
112 |
Q |
| |
|
||||| ||||| ||||||| | ||||||| |||| ||| | | ||||||| |||||||||||| ||||||||| |||| | |||| ||| || || |
|
|
| T |
31496768 |
gagattaaaaaaattgttcaaaggataatggatattttggattgcaaatctatatgtgtttcaaatgatttagttgggatggactctcatatgcaaaaat |
31496867 |
T |
|
| Q |
113 |
tacaaaatcatttgcttttggactcggatgatggtgctcgtgttataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttata |
212 |
Q |
| |
|
|| |||| | ||| ||||||||||||| | ||| || |||||| |||||||||||||| |||||||||||||||||||| |||||||| | |||| || |
|
|
| T |
31496868 |
tagaaaagcttttacttttggactcggttaatgatggtcgtgtcataggaatttgtgggatgggaggaatagggaagactacccttgctactgctttgta |
31496967 |
T |
|
| Q |
213 |
tgaccaaatatctcatcgatttagtgcaaattgttttattgatgatgtaagcaaaatatatagatta |
279 |
Q |
| |
|
|| |||| ||| ||| |||| |||| |||||||||||||||||||||||||| | ||||||| |
|
|
| T |
31496968 |
tgctaaaatctctaatcaatttgatgcatgatgttttattgatgatgtaagcaaaatttttagatta |
31497034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 127 - 276
Target Start/End: Complemental strand, 31019913 - 31019764
Alignment:
| Q |
127 |
cttttggactcggatgatggtgctcgtgttataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttatatgaccaaatatctc |
226 |
Q |
| |
|
||||||||||||| ||||| || ||| ||| ||||||||||||| ||||| ||||||||||||||||| || || | ||||||||| ||||| |||| |
|
|
| T |
31019913 |
cttttggactcggttgatgatgttcgggttgtaggaatttgtgggatgggtggaatagggaagacaactctggctactgctttatatggtcaaatctctc |
31019814 |
T |
|
| Q |
227 |
atcgatttagtgcaaattgttttattgatgatgtaagcaaaatatataga |
276 |
Q |
| |
|
||| |||| |||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
31019813 |
atcaatttgatgcacgttgttttattgatgatctaagcaaaatatataga |
31019764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 127 - 276
Target Start/End: Complemental strand, 31029794 - 31029645
Alignment:
| Q |
127 |
cttttggactcggatgatggtgctcgtgttataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttatatgaccaaatatctc |
226 |
Q |
| |
|
||||||||||||| ||||| || ||| ||| ||||||||||||| ||||| ||||||||||||||||| || | | ||||||||| ||||| |||| |
|
|
| T |
31029794 |
cttttggactcggttgatgatgttcgggttgtaggaatttgtgggatgggtggaatagggaagacaactctgactactgctttatatggtcaaatctctc |
31029695 |
T |
|
| Q |
227 |
atcgatttagtgcaaattgttttattgatgatgtaagcaaaatatataga |
276 |
Q |
| |
|
||| |||| |||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
31029694 |
atcaatttgatgcacgttgttttattgatgatctaagcaaaatatataga |
31029645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 127 - 276
Target Start/End: Original strand, 31489633 - 31489782
Alignment:
| Q |
127 |
cttttggactcggatgatggtgctcgtgttataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttatatgaccaaatatctc |
226 |
Q |
| |
|
||||||||||| ||||| || ||| ||| ||||||||||||| ||||| ||||||||||||||||| || || | ||||||||| ||||| |||| |
|
|
| T |
31489633 |
cttttggactccattgatgatgttcgggttgtaggaatttgtgggatgggtggaatagggaagacaactctggctactgctttatatggtcaaatctctc |
31489732 |
T |
|
| Q |
227 |
atcgatttagtgcaaattgttttattgatgatgtaagcaaaatatataga |
276 |
Q |
| |
|
||| |||| |||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
31489733 |
atcaatttgatgcacgttgttttattgatgatctaagcaaaatatataga |
31489782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 64 - 279
Target Start/End: Original strand, 31501988 - 31502203
Alignment:
| Q |
64 |
tcatgtgtttcaaaagatttagttaggattaattctcctatagaagcattacaaaatcatttgcttttggactcggatgatggtgctcgtgttataggaa |
163 |
Q |
| |
|
||||||||||||||||| ||||| | ||| ||||| |||| |||||||| |||| | ||| || |||||||| | ||||| || || | | |||||| |
|
|
| T |
31501988 |
tcatgtgtttcaaaagacatagttggaattgtttctcatatacaagcattagaaaaacttttactcttggactctgttgatgatgttcaagctgtaggaa |
31502087 |
T |
|
| Q |
164 |
tttgtggaatgggaggaatagggaagacaacccttgccatgactttatatgaccaaatatctcatcgatttagtgcaaattgttttattgatgatgtaag |
263 |
Q |
| |
|
| ||||| ||||| |||||||||||||||||||||| | | | ||||||| ||| ||||||| |||| ||||| ||||||||| ||||||||||| |
|
|
| T |
31502088 |
tctgtgggatgggtggaatagggaagacaacccttggtagggttctatatgatagaatttctcatcaatttggtgcatgttgttttatcgatgatgtaag |
31502187 |
T |
|
| Q |
264 |
caaaatatatagatta |
279 |
Q |
| |
|
|||||| | ||||||| |
|
|
| T |
31502188 |
caaaatgtttagatta |
31502203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 56 - 276
Target Start/End: Complemental strand, 31159433 - 31159213
Alignment:
| Q |
56 |
acaaatcttcatgtgtttcaaaagatttagttaggattaattctcctatagaagcattacaaaatcatttgcttttggactcggatgatggtgctcgtgt |
155 |
Q |
| |
|
|||||| ||||||| || ||||||| |||||| | || |||| |||||||||| | || ||||| || ||||||||||| | ||||| || ||| || |
|
|
| T |
31159433 |
acaaattttcatgtcttccaaaagaattagttggaataaattatcctatagaaaaagtagcaaatctattacttttggactccgttgatgatgttcgggt |
31159334 |
T |
|
| Q |
156 |
tataggaatttgtggaatgggaggaatagggaagacaacccttgccatgactttatatgaccaaatatctcatcgatttagtgcaaattgttttattgat |
255 |
Q |
| |
|
| ||||||||||||| ||||| ||||||||||||||||| ||| | | |||||| || ||| |||||||||||| || | ||||||||||||| |
|
|
| T |
31159333 |
tgtaggaatttgtgggatgggtggaatagggaagacaactcttactactgctttatgtggtagaatctctcatcgatttgatgtacgttgttttattgat |
31159234 |
T |
|
| Q |
256 |
gatgtaagcaaaatatataga |
276 |
Q |
| |
|
||| |||||| |||||||||| |
|
|
| T |
31159233 |
gatctaagcagaatatataga |
31159213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 200
Target Start/End: Complemental strand, 31150514 - 31150388
Alignment:
| Q |
74 |
caaaagatttagttaggattaattctcctatagaagcattacaaaatcatttgcttttggactcggatgatggtgctcgtgttataggaatttgtggaat |
173 |
Q |
| |
|
||||| ||||||| |||| |||||||| || | | |||| |||| ||||| |||||||||||| ||||| || |||||| ||||||||||||| || |
|
|
| T |
31150514 |
caaaaaatttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggat |
31150415 |
T |
|
| Q |
174 |
gggaggaatagggaagacaacccttgc |
200 |
Q |
| |
|
||| ||| ||||||||||||||||||| |
|
|
| T |
31150414 |
gggtggagtagggaagacaacccttgc |
31150388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 190
Target Start/End: Complemental strand, 31161787 - 31161692
Alignment:
| Q |
95 |
attctcctatagaagcattacaaaatcatttgcttttggactcggatgatggtgctcgtgttataggaatttgtggaatgggaggaatagggaaga |
190 |
Q |
| |
|
|||||| || ||||| |||| |||| ||||| |||||||| |||| ||||| || || ||| ||||| ||||||| ||||| ||||||||||||| |
|
|
| T |
31161787 |
attctcttacagaagaattagaaaaacatttacttttggattcggttgatgatgtgcgggttgtaggagtttgtgggatgggtggaatagggaaga |
31161692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 200
Target Start/End: Original strand, 31245019 - 31245113
Alignment:
| Q |
106 |
gaagcattacaaaatcatttgcttttggactcggatgatggtgctcgtgttataggaatttgtggaatgggaggaatagggaagacaacccttgc |
200 |
Q |
| |
|
|||| |||| |||| | |||| || ||||||| ||||||| || ||| || |||| |||||||||||||| |||||||||||||| || ||||| |
|
|
| T |
31245019 |
gaagaattagaaaagcttttgattatggactcagatgatgatgttcgagtggtagggatttgtggaatgggtggaatagggaagactactcttgc |
31245113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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