View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7049_low_8 (Length: 249)

Name: NF7049_low_8
Description: NF7049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7049_low_8
NF7049_low_8
[»] scaffold0133 (4 HSPs)
scaffold0133 (99-242)||(9506-9649)
scaffold0133 (131-242)||(13854-13965)
scaffold0133 (1-105)||(9673-9777)
scaffold0133 (1-105)||(14012-14116)
[»] chr6 (3 HSPs)
chr6 (98-242)||(16782104-16782248)
chr6 (47-105)||(16659176-16659233)
chr6 (47-100)||(16661196-16661248)
[»] scaffold0256 (2 HSPs)
scaffold0256 (100-199)||(10169-10268)
scaffold0256 (1-103)||(10295-10397)
[»] chr3 (2 HSPs)
chr3 (108-228)||(38938385-38938504)
chr3 (11-69)||(38938275-38938333)
[»] chr5 (2 HSPs)
chr5 (11-102)||(11982848-11982938)
chr5 (181-227)||(11983122-11983168)


Alignment Details
Target: scaffold0133 (Bit Score: 108; Significance: 2e-54; HSPs: 4)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 99 - 242
Target Start/End: Complemental strand, 9649 - 9506
Alignment:
Q  99 tttttccatagcagccaattttgacatgttgcagaagaactacatccattgatttaatatataatctttgaaaataaatcacaacgcatatttcatcttc 198  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||| ||||||||||||||    
T  9649 tttttctatagcagccaattttgacatgttgcagaagaactacatccactgatttaatatataatctttgaaaacaaataacaactcatatttcatcttc 9550  T
Q  199 ctagaccaaagtcatctccaatccaaacctctttgattcatttc 242  Q
    ||||| |||| |||||||||||||||||  ||||||||||||||    
T  9549 ctagagcaaaatcatctccaatccaaacaactttgattcatttc 9506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 131 - 242
Target Start/End: Complemental strand, 13965 - 13854
Alignment:
Q  131 agaagaactacatccattgatttaatatataatctttgaaaataaatcacaacgcatatttcatcttcctagaccaaagtcatctccaatccaaacctct 230  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||| |||| |||||||||||||||||  ||    
T  13965 agaagaactacatccactgatttaatatataatctttgaaaacaaataacaactcatatttcatcttcctagagcaaaatcatctccaatccaaacaact 13866  T
Q  231 ttgattcatttc 242  Q
    ||||||||||||    
T  13865 ttgattcatttc 13854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 9777 - 9673
Alignment:
Q  1 cacacaagaacaaatgaatgggcatgatgttgtttcataagataagttttccaattttgttttattccccttcattgccatgtagcttcacaacttgttt 100  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||  |||||  ||||||||    
T  9777 cacacaagaacaaatgaacgagcatgatgttgtttcataagataagttttccaattttgtttttttccctttcatggccatgtgccttcaacacttgttt 9678  T
Q  101 tttcc 105  Q
    |||||    
T  9677 tttcc 9673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 14116 - 14012
Alignment:
Q  1 cacacaagaacaaatgaatgggcatgatgttgtttcataagataagttttccaattttgttttattccccttcattgccatgtagcttcacaacttgttt 100  Q
    |||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| ||||  ||||| |||||||  |||||||||||||||    
T  14116 cacacaagaacaaatgaacggtcatgatgttgtttcatatgataagttttccaattttgtttttttccttttcatggccatgtgccttcacaacttgttt 14017  T
Q  101 tttcc 105  Q
    |||||    
T  14016 tttcc 14012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 98 - 242
Target Start/End: Complemental strand, 16782248 - 16782104
Alignment:
Q  98 ttttttccatagcagccaattttgacatgttgcagaagaactacatccattgatttaatatataatctttgaaaataaatcacaacgcatatttcatctt 197  Q
    ||||||| |||||| ||||| || ||| ||||||||| ||||||||||| |||||||||| |||||||||||||| |||| ||||| |||||||||||||    
T  16782248 ttttttctatagcaaccaatattcacaagttgcagaaaaactacatccactgatttaatagataatctttgaaaacaaataacaactcatatttcatctt 16782149  T
Q  198 cctagaccaaagtcatctccaatccaaacctctttgattcatttc 242  Q
    |||||| |||||||||||| |||| ||||  ||||||||||||||    
T  16782148 cctagagcaaagtcatctctaatctaaacaactttgattcatttc 16782104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 105
Target Start/End: Complemental strand, 16659233 - 16659176
Alignment:
Q  47 ttttccaattttgttttattccccttcattgccatgtagcttcacaacttgttttttcc 105  Q
    |||||||| |||||||| |||||||||||||||||||| ||| ||||| ||||||||||    
T  16659233 ttttccaaatttgtttt-ttccccttcattgccatgtaccttaacaacatgttttttcc 16659176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 16661248 - 16661196
Alignment:
Q  47 ttttccaattttgttttattccccttcattgccatgtagcttcacaacttgttt 100  Q
    |||||||||||| |||| |||||||||||||||||||| ||||||||| |||||    
T  16661248 ttttccaattttatttt-ttccccttcattgccatgtaccttcacaacatgttt 16661196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 100 - 199
Target Start/End: Complemental strand, 10268 - 10169
Alignment:
Q  100 ttttccatagcagccaattttgacatgttgcagaagaactacatccattgatttaatatataatctttgaaaataaatcacaacgcatatttcatcttcc 199  Q
    ||||| ||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  10268 ttttctatagcagtcaattttgacatgttgcaaaagaactacatccactgatttaatatataatctttgaaaacaaataacaacgcatatttcatcttcc 10169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 10397 - 10295
Alignment:
Q  1 cacacaagaacaaatgaatgggcatgatgttgtttcataagataagttttccaattttgttttattccccttcattgccatgtagcttcacaacttgttt 100  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||| ||||  ||||| |||||||  |||||||||||||||    
T  10397 cacacaagaacaaatgaacgggcatgatgttgttacataagataagttttccaattttttttttttccttttcatggccatgtgccttcacaacttgttt 10298  T
Q  101 ttt 103  Q
    |||    
T  10297 ttt 10295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 108 - 228
Target Start/End: Original strand, 38938385 - 38938504
Alignment:
Q  108 agcagccaattttgacatgttgcagaagaactacatccattgatttaatatataatctttgaaaataaatcacaacgcatatttcatcttcctagaccaa 207  Q
    |||||||||| |||||| ||||||||||||||||||||| |||||||||| | |||||||||||| |||| || || ||||||||||||||||||| |||    
T  38938385 agcagccaatattgacaagttgcagaagaactacatccactgatttaatagacaatctttgaaaaaaaataactacacatatttcatcttcctagagcaa 38938484  T
Q  208 agtcatctccaatccaaacct 228  Q
    || ||||||||||||||||||    
T  38938485 ag-catctccaatccaaacct 38938504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 38938275 - 38938333
Alignment:
Q  11 caaatgaatgggcatgatgttgtttcataagataagttttccaattttgttttattccc 69  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||    
T  38938275 caaatgaatggacatgatgttgtttcatatgataagttttccaattttgtttttttccc 38938333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 11982848 - 11982938
Alignment:
Q  11 caaatgaatgggcatgatgttgtttcataagataagttttccaattttgttttattccccttcattgccatgtagcttcacaacttgttttt 102  Q
    ||||||||||| ||||||||||||| |   ||||||||||||||||||||||| ||||||||||||| |||||| |||  ||||||||||||    
T  11982848 caaatgaatggacatgatgttgtttgaattgataagttttccaattttgtttt-ttccccttcattgtcatgtaccttaccaacttgttttt 11982938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 11983122 - 11983168
Alignment:
Q  181 aacgcatatttcatcttcctagaccaaagtcatctccaatccaaacc 227  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||    
T  11983122 aacgcatatttcatcttcatagagcaaagtcatctccaatccaaacc 11983168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University