View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7049_low_9 (Length: 238)
Name: NF7049_low_9
Description: NF7049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7049_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 45047824 - 45048025
Alignment:
| Q |
1 |
agtaatagggaccacaaaaccataacaatttcaaatttacacaataaaaattgattttagctcataaaaatttgaatgtgttaatttccctctaagaaat |
100 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
45047824 |
agtaatagggaccacaaaaccataacaattttaaatttacacaataaaaattgattttagctcgtaaaaatttgaatgtgttaatttccctctaagaaat |
45047923 |
T |
|
| Q |
101 |
gtca--ttttcaggtgtattattaagnnnnnnncaaatgctaaatttgaaatgaggcccaactatgctaagcccagcactcaaactctcctcttttcaga |
198 |
Q |
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|||| ||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
45047924 |
gtcattttttcaggtgtgttattaagaaaaaaacaaatgttaaatttgaaatgaggcccaactatgctaagcccagcactcaaactctcctattttcaga |
45048023 |
T |
|
| Q |
199 |
at |
200 |
Q |
| |
|
|| |
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|
| T |
45048024 |
at |
45048025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 25428054 - 25428100
Alignment:
| Q |
3 |
taatagggaccacaaaaccataacaatt-tcaaatttacacaataaa |
48 |
Q |
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| T |
25428054 |
taatagggaccacaaaaccataacaattctcacattttcacaataaa |
25428100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 116; Significance: 4e-59; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 25571997 - 25572203
Alignment:
| Q |
1 |
agtaatagggaccacaaaaccataacaatttcaaatttacacaataaaaat-----------tgattttagctcataaaaatttgaatgtgttaatttcc |
89 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||| |||||||||||||||||| |
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| T |
25571997 |
agtaatagggacaacaaaaccataacaatttcaaatttacacaataaaaataacatcaaaattcattttagttcataaaaaattgaatgtgttaatttcc |
25572096 |
T |
|
| Q |
90 |
ctctaagaaatgtcattttcaggtgtattattaagnnnnnnncaaatgctaaatttgaaatgaggcccaactatgctaagcccagcactcaaactctcct |
189 |
Q |
| |
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|||||||||||| ||||||||||||| |||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25572097 |
ctctaagaaatggcattttcaggtgtgttattaagaaaaaaacaaatgttcaatttgaaatgaggcccaactatgctaagcccagcactcaaactctcct |
25572196 |
T |
|
| Q |
190 |
cttttca |
196 |
Q |
| |
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||||||| |
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|
| T |
25572197 |
cttttca |
25572203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 26006465 - 26006671
Alignment:
| Q |
1 |
agtaatagggaccacaaaaccataacaatttcaaatttacacaataaaaat-----------tgattttagctcataaaaatttgaatgtgttaatttcc |
89 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||| |||||||||||||||||| |
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| T |
26006465 |
agtaatagggacaacaaaaccataacaatttcaaatttacacaataaaaataacatcaaaattcattttagttcataaaaaattgaatgtgttaatttcc |
26006564 |
T |
|
| Q |
90 |
ctctaagaaatgtcattttcaggtgtattattaagnnnnnnncaaatgctaaatttgaaatgaggcccaactatgctaagcccagcactcaaactctcct |
189 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26006565 |
ctctaagaaatggcattttcaggtgtgttattaagaaaaaaacaaatgttcaatttgaaatgaggcccaactatgctaagcccagcactcaaactctcct |
26006664 |
T |
|
| Q |
190 |
cttttca |
196 |
Q |
| |
|
||||||| |
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|
| T |
26006665 |
cttttca |
26006671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 26125230 - 26125441
Alignment:
| Q |
1 |
agtaatagggaccacaaaaccataacaatttcaaatttacacaataaaaat-----------tgattttagctcataaaaatttgaatgtgttaatttcc |
89 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||| |||||||||||||||||| |
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| T |
26125230 |
agtaatagggacaacaaaaccataacaatttcaaatttacacaataaaaataacatcaaaattcattttagttcataaaaaattgaatgtgttaatttcc |
26125329 |
T |
|
| Q |
90 |
ctctaagaaatgtcattttcaggtgtattattaagnnnnnnncaaatgctaaatttgaaatgaggcccaactatgctaagcccagcactcaaactctcct |
189 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26125330 |
ctctaagaaatgtcattttcaagtgtgttattaagaaaaaaacaaatgttcaatttgaaatgaggcccaactatgctaagcccagcactcaaactctcct |
26125429 |
T |
|
| Q |
190 |
c-ttttcagaat |
200 |
Q |
| |
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| |||||||||| |
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| T |
26125430 |
cattttcagaat |
26125441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 23363050 - 23363099
Alignment:
| Q |
1 |
agtaatagggaccacaaaaccataacaatttcaaatttacacaataaaaa |
50 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
23363050 |
agtaatagggaccacaaaaccataacaatttgaaatttacacaataaaaa |
23363099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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