View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7050_high_2 (Length: 473)
Name: NF7050_high_2
Description: NF7050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7050_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 403; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 13 - 460
Target Start/End: Original strand, 4313926 - 4314373
Alignment:
| Q |
13 |
aatatcatagtttcccaagattggatcaatgaacgtggtaaatgataaatgtcgagtcttggtaccaatatttgtttcatttctgagttcttctactctg |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4313926 |
aatatcatagtttcccaagattggatcaatgaacgtggtaaatgataaatgtcgagtcttggtaccaatatttgtttcatttccgagttcttctactctg |
4314025 |
T |
|
| Q |
113 |
taatagaattctccaccaagcaatgtggccaaatcatgcactaggtcatgcatnnnnnnnctcttgttctcacttcctgaacattgaaaaaatgaccttg |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4314026 |
taatagaattctccaccaagcaatgtggccaaatcatgcaccaggtcatgcataacaaaactcttgttctcacttcctgaacattgaaaaaatgaccttg |
4314125 |
T |
|
| Q |
213 |
aaactaagtcattaaaatattcattaccaacttcttctaaagtcttcccatttttaggagactttaaaagaccttcggccatccataacaagatcaaatt |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4314126 |
aaactaagtcattaaaatattcattaccaacttcttctaaagtcttcccatttttaggagactttaaaagatcttcggccatccataacaagatcaaatt |
4314225 |
T |
|
| Q |
313 |
gtctttacgaaatgtataatctttaggatacaaggaacaataaacaaagcagcgtttcaaatagggagggagataatgataactaattcggagtgctgga |
412 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4314226 |
gtctttacgaaatgtgtaatctttaggatacaaggaacaataaacaaagcagcgtttcaaatagggagagagataatgataactaattcggagtgctgga |
4314325 |
T |
|
| Q |
413 |
atgatcttactctcattttcccaaatgttactatttagtatattattc |
460 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4314326 |
atgatattactctcattttcccaaatgttactatttagtatattattc |
4314373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 8 - 460
Target Start/End: Complemental strand, 4254565 - 4254113
Alignment:
| Q |
8 |
cgaagaatatcatagtttcccaagattggatcaatgaacgtggtaaatgataaatgtcgagtcttggtaccaatatttgtttcatttctgagttcttcta |
107 |
Q |
| |
|
|||| ||||||| || || |||||||||||||| ||||| ||||||||||||| ||||| || |||||||| || ||||| || | || |||| | |
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|
| T |
4254565 |
cgaaaaatatcaaagctttccaagattggatcactgaactcactaaatgataaatgacgagtgttagtaccaatcttagtttctttcccaagctcttatg |
4254466 |
T |
|
| Q |
108 |
ctctgtaatagaattctccaccaagcaatgtggccaaatcatgcactaggtcatgcatnnnnnnnctcttgttctcacttcctgaacattgaaaaaatga |
207 |
Q |
| |
|
|||| |||||||||||||| |||| ||||| || ||||||||||| || |||||||| |||| ||||||| | || |||| |||||||||||| |
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|
| T |
4254465 |
ttctgaaatagaattctccatcaagaaatgttgctaaatcatgcaccagatcatgcatcacaaaactctggttctcattcccggaacgttgaaaaaatga |
4254366 |
T |
|
| Q |
208 |
ccttgaaactaagtcattaaaatattcattaccaacttcttctaaagtcttcccatttttaggagactttaaaagaccttcggccatccataacaagatc |
307 |
Q |
| |
|
|| ||| |||||||||||||||| ||| |||||||||||||||||| ||||||||||| | || |||||||| |||| || ||||| ||||||||| |
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|
| T |
4254365 |
tctagaagctaagtcattaaaatacccataaccaacttcttctaaagtattcccattttttgaaggtcttaaaagatcttcagctatccacaacaagatc |
4254266 |
T |
|
| Q |
308 |
aaattgtctttacgaaatgtataatctttaggatacaaggaacaataaacaaagcagcgtttcaaatagggagggagataatgataactaattcggagtg |
407 |
Q |
| |
|
|||| ||| || |||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| || |||||| |||| |
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|
| T |
4254265 |
aaatcatctctatcaaattcgtaatctttaggatacaaggaacaataaacaaagcaacgtttcaaacagggagggagataatggtatctaatttttagtg |
4254166 |
T |
|
| Q |
408 |
ctggaatgatcttactctcattttcccaaatgttactatttagtatattattc |
460 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
4254165 |
ctggaatgatcttactctcattttcccagatgttactattgagtatattattc |
4254113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 191 - 460
Target Start/End: Complemental strand, 4247263 - 4246994
Alignment:
| Q |
191 |
gaacattgaaaaaatgaccttgaaactaagtcattaaaatattcattaccaacttcttctaaagtcttcccatttttaggagactttaaaagaccttcgg |
290 |
Q |
| |
|
|||| |||||||||||| | |||||||| |||||||||| |||||||||||| ||||||||||||| ||| |||| |||| || ||||||| |||| | |
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|
| T |
4247263 |
gaacgttgaaaaaatgatatggaaactaaatcattaaaatgatcattaccaactgcttctaaagtcttaccagtttttggaggctgtaaaagatcttctg |
4247164 |
T |
|
| Q |
291 |
ccatccataacaagatcaaattgtctttacgaaatgtataatctttaggatacaaggaacaataaacaaagcagcgtttcaaatagggagggagataatg |
390 |
Q |
| |
|
||||||| |||||||||| | ||| | |||| || ||| |||||| |||| ||||| ||||||||||||||||||||||| || || |||| || |
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|
| T |
4247163 |
ccatccacaacaagatcagttcctctctgtaaaattcatgatccttaggaaacaatgaacagtaaacaaagcagcgtttcaaataagggggtagatgttg |
4247064 |
T |
|
| Q |
391 |
ataactaattcggagtgctggaatgatcttactctcattttcccaaatgttactatttagtatattattc |
460 |
Q |
| |
|
||||||||||| | |||||||||||||||||||| | |||||||||||||||||| ||||| ||||||| |
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|
| T |
4247063 |
ataactaattctcaatgctggaatgatcttactctgagtttcccaaatgttactatgtagtagattattc |
4246994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 354 - 459
Target Start/End: Original strand, 4305405 - 4305510
Alignment:
| Q |
354 |
aaacaaagcagcgtttcaaatagggagggagataatgataactaattcggagtgctggaatgatcttactctcattttcccaaatgttactatttagtat |
453 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||| ||||| ||| ||||||| ||||| |||||||||||| ||||||||||||||||| ||||||| |
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|
| T |
4305405 |
aaacaaagcaacatttcaaatagggagggagataatggtaactgatttggagtgcaggaataatcttactctcagtttcccaaatgttactagttagtat |
4305504 |
T |
|
| Q |
454 |
attatt |
459 |
Q |
| |
|
|||||| |
|
|
| T |
4305505 |
attatt |
4305510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 13 - 455
Target Start/End: Complemental strand, 41934003 - 41933561
Alignment:
| Q |
13 |
aatatcatagtttcccaagattggatcaatgaacgtggtaaatgataaatgtcgagtcttggtaccaatatttgtttcatttctgagttcttctactctg |
112 |
Q |
| |
|
||||||| ||||| || ||||||||||| |||| ||| ||||||||||||| ||||||||||||| ||| ||||||||||||| ||||||||| |||| |
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|
| T |
41934003 |
aatatcaaagttttccgagattggatcagtgaatgtgctaaatgataaatgacgagtcttggtactaatctttgtttcatttccaagttcttctgttctg |
41933904 |
T |
|
| Q |
113 |
taatagaattctccaccaagcaatgtggccaaatcatgcactaggtcatgcatnnnnnnnctcttgttctcacttcctgaacattgaaaaaatgaccttg |
212 |
Q |
| |
|
||||||||||| ||||| ||||| ||||| ||||| |||||||| |||||||| || ||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
41933903 |
taatagaattccccaccgagcaacgtggctaaatcgtgcactagatcatgcatcacaaaacttttgttctcatttccagaacattgaaaaaatgaccttg |
41933804 |
T |
|
| Q |
213 |
aaactaagtcattaaaatattcattaccaacttcttctaaagtcttcccatttttaggagactttaaaagaccttcggccatccataacaagatcaaatt |
312 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||| ||||| || | || || |||||||||||||||||||||||||||||||||||| |
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|
| T |
41933803 |
aagctaagtcattaaaatattcattaccaacttcttctaaagtcatcccacttcttttaggctgtaaaagaccttcggccatccataacaagatcaaatt |
41933704 |
T |
|
| Q |
313 |
gtctttacgaaatgtataatctttaggatacaaggaacaataaacaaagcagcgtttcaaatagggagggagataatgataactaattcggagtgctgga |
412 |
Q |
| |
|
||||||| ||||| |||||| |||||||| |||||||||||||||||||| ||||||||||| ||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
41933703 |
gtctttatgaaattcataatccttaggatataaggaacaataaacaaagcaacgtttcaaataaggaaggagataatgataactgattcggagtgctgga |
41933604 |
T |
|
| Q |
413 |
atgatcttactctcattttcccaaatgttactatttagtatat |
455 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41933603 |
atgatcttactctcattttcccaaatgttactatttagtatat |
41933561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 150; Significance: 4e-79; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 54 - 460
Target Start/End: Original strand, 34802043 - 34802449
Alignment:
| Q |
54 |
atgataaatgtcgagtcttggtaccaatatttgtttcatttctgagttcttctactctgtaatagaattctccaccaagcaatgtggccaaatcatgcac |
153 |
Q |
| |
|
||||||| || ||||||||||||||||| |||||||| || | |||||||| ||| ||||||| |||||||| | ||| || || ||||||||||| |
|
|
| T |
34802043 |
atgataagtgacgagtcttggtaccaatctttgtttctttccctagttcttccgttctaaaatagaactctccacctatcaacgttgctaaatcatgcac |
34802142 |
T |
|
| Q |
154 |
taggtcatgcatnnnnnnnctcttgttctcacttcctgaacattgaaaaaatgaccttgaaactaagtcattaaaatattcattaccaacttcttctaaa |
253 |
Q |
| |
|
||| |||||||| |||| ||| |||| || |||| ||||||||||| |||||| |||||||||||||||| ||| || ||||||||||||| |
|
|
| T |
34802143 |
tagatcatgcatcacaaaactctcattcccactcccagaacgatgaaaaaatgatcttgaagctaagtcattaaaatacccataactaacttcttctaaa |
34802242 |
T |
|
| Q |
254 |
gtcttcccatttttaggagactttaaaagaccttcggccatccataacaagatcaaattgtctttacgaaatgtataatctttaggatacaaggaacaat |
353 |
Q |
| |
|
||||||||| ||| |||| || ||||||| |||| |||||||||||||||||||||| ||||||| ||| |||||| |||||||||| ||| ||| |
|
|
| T |
34802243 |
gtcttcccaatttccggaggctgtaaaagatcttcagccatccataacaagatcaaatcgtctttatcgaattcataatccttaggatacagtgaataat |
34802342 |
T |
|
| Q |
354 |
aaacaaagcagcgtttcaaatagggagggagataatgataactaattcggagtgctggaatgatcttactctcattttcccaaatgttactatttagtat |
453 |
Q |
| |
|
|||||||||| | ||||| ||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
34802343 |
aaacaaagcatcccttcaagcagggagggagataatgataactaattcatagtgccggaatgatcttacactcattttcccaaatgttattatttagtat |
34802442 |
T |
|
| Q |
454 |
attattc |
460 |
Q |
| |
|
||||||| |
|
|
| T |
34802443 |
attattc |
34802449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 196 - 432
Target Start/End: Original strand, 6059532 - 6059768
Alignment:
| Q |
196 |
ttgaaaaaatgaccttgaaactaagtcattaaaatattcattaccaacttcttctaaagtcttcccatttttaggagactttaaaagaccttcggccatc |
295 |
Q |
| |
|
|||||||||||| || |||||||| | || |||||| ||| |||||| ||||| |||||| | || ||| | || | | ||||||| ||||||||||| |
|
|
| T |
6059532 |
ttgaaaaaatgatctcgaaactaaataatcaaaatactcagaaccaacctcttcaaaagtcattccttttattggtggcaataaaagatcttcggccatc |
6059631 |
T |
|
| Q |
296 |
cataacaagatcaaattgtctttacgaaatgtataatctttaggatacaaggaacaataaacaaagcagcgtttcaaatagggagggagataatgataac |
395 |
Q |
| |
|
|| |||||||| |||| | ||| |||| ||||||||| ||||| | |||||||||||||| ||||||||||||| ||||||||||| ||||||| |
|
|
| T |
6059632 |
cacaacaagattaaatcatttttctcaaattcataatctttgggatatagcgaacaataaacaaaacagcgtttcaaatgtggagggagatagtgataac |
6059731 |
T |
|
| Q |
396 |
taattcggagtgctggaatgatcttactctcattttc |
432 |
Q |
| |
|
|||||| | ||| ||||||| |||||| ||| |||| |
|
|
| T |
6059732 |
taattctcaatgccggaatgaccttactttcactttc |
6059768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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