View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7050_low_2 (Length: 486)
Name: NF7050_low_2
Description: NF7050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7050_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 423; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 8 - 467
Target Start/End: Original strand, 2515656 - 2516115
Alignment:
| Q |
8 |
ttctcctcatttaggctaactacgtatacacttcttccataactgaaattttgtaagatatttggtgaacttagaccttgattgttgttattgtaattag |
107 |
Q |
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| T |
2515656 |
ttctcctcatttaggctaactacgtatacacttcttccataactgaaatattgtaagatatttggtgaactaagaccttgattgttgttattgtaattag |
2515755 |
T |
|
| Q |
108 |
ggaaatttagaacctatgaagtaccgacacaaacacaggacgcgtcgagnnnnnnnctgattgaatgtaatcacatgtgatgtgtcggtgttggagtata |
207 |
Q |
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| T |
2515756 |
ggaaatttagaacctatgaagtaccgacacaaacacaggacgcgtcgagaaaaaaactgattgaatgtaatcacatgtgatgtgtcggtgttggagtata |
2515855 |
T |
|
| Q |
208 |
ccatacatgtgaacgcagaaaagtagcaaattttttacctagattaatccaagttaaaaattgtgagatgacaatgcagaaaaggaagtaaatgctttta |
307 |
Q |
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| T |
2515856 |
ccatacatgtgaatgcagaaaagtagcaaattttttacctagattaatccaagttaaaaattgtgagatgacaatgcagaaaaggaagtaaatgctttta |
2515955 |
T |
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| Q |
308 |
ttctctaacaataacaccataaaagattacacagctccctggattatcaggaacacagtctcatcatatattcatagatatgaaaaaagatgactaccaa |
407 |
Q |
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| T |
2515956 |
ttctctaacaataacaccataaaagattacacagctccctggattatcaggaacacagtctcatcatatattcatagatatgaaaaaagatgactaccaa |
2516055 |
T |
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| Q |
408 |
ggtggtataaagacagctaaactttctagaaaggatttgaaaaaattgacaacataacaa |
467 |
Q |
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| T |
2516056 |
ggtggtataaagacagctaaactttctagaaaagatttgaaaaaattgacaacataacaa |
2516115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 273 - 470
Target Start/End: Original strand, 2496344 - 2496545
Alignment:
| Q |
273 |
agatgacaatgcagaaaaggaagtaaatgcttttattctctaacaataacaccataaaagattacacagctccctggattatcaggaacacag-tctcat |
371 |
Q |
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||||||||||||| ||| | ||| ||||||||||||| |||| ||||||||| ||| | |||| ||||||||||| | |||||||||||||| |||||| |
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| T |
2496344 |
agatgacaatgcacaaaggcaagcaaatgcttttattttctatcaataacac--taatacattatacagctccctgaactatcaggaacacaggtctcat |
2496441 |
T |
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| Q |
372 |
catat-----attcatagatatgaaaaaagatgactaccaaggtggtataaagacagctaaactttctagaaaggatttg-aaaaaattgacaacataac |
465 |
Q |
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| T |
2496442 |
catatcatacattcatacatatgaaaa-agatgactgcaaaagtggtacaaagacaactaaacattctataaaagatttgaaaaaaattgacaacataac |
2496540 |
T |
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| Q |
466 |
aatac |
470 |
Q |
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||||| |
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| T |
2496541 |
aatac |
2496545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 2517022 - 2517070
Alignment:
| Q |
80 |
agaccttgattgttgttattgtaattagggaaatttagaacctatgaag |
128 |
Q |
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| T |
2517022 |
agaccttgattgttgttattgtaattagggaaattcaaaacctatgaag |
2517070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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