View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7050_low_4 (Length: 468)
Name: NF7050_low_4
Description: NF7050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7050_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 21120633 - 21120189
Alignment:
| Q |
1 |
gccccttgttttgttgcatcatgtttcgggaagtaaagatgtcaaccattctttttgaatcaagctcaaaatcaataagactcaagtttagttcataaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21120633 |
gccccttgttttgttgcatcatgtttcgggaagtaaagatgtcaaccattctttttgaatcaagctcaaaatcaataagactcaagtttagttcataaac |
21120534 |
T |
|
| Q |
101 |
ccagttaagcgctaataaaagtcataaaacttctccaatatgtatttctcattttggtttaaagaatcccgttttagccaaaataaaagcacatctatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21120533 |
ccagttaagcgctaataaaagtcataaaacttctccaatatgtatttctcattttggtttaaagaatcccgttttagccaaaataaaagcacatctatca |
21120434 |
T |
|
| Q |
201 |
tatcttatgcacactcctatacaaaccttgtcatcatgcgcagaaaaaggacacatcaatgttgcatttcatccgtcctttagtcggctttgtccatttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
21120433 |
tatcttatgcacactcctatacaaaccttgtcatcatgcgcagaaaaaggacacatcaatgttgcatttcatccgtcctttactcggctttgtccatttt |
21120334 |
T |
|
| Q |
301 |
atgggtccaaaagacttattttggggagtgggcggattacaagtttgacgagctgctctccaatcatgtagcatagatattgcacgctgtaatacgacat |
400 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21120333 |
atggttccaaaagacttattttggggagtgggcggattacaagtttgacgagctgctctccaatcatgtagcatagatattgcacgctgtaatacgacat |
21120234 |
T |
|
| Q |
401 |
tcactagtaatacacataaaccaaccaaaattctattccacaggt |
445 |
Q |
| |
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|| |||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
21120233 |
tctctagtaatacacataaaccaaccacaattctattccacaggt |
21120189 |
T |
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