View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7050_low_5 (Length: 452)
Name: NF7050_low_5
Description: NF7050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7050_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 418; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Complemental strand, 3340762 - 3340333
Alignment:
| Q |
1 |
tgattgtgatttcaatacctccatagctctctcctcctatgtacaatgcccttgttctatatgaaggaaacttgaggaaccacttatgtaggaaagtgta |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3340762 |
tgatggtgatttcaatacctccatagctctctcctcctatgtacaatgcccttgttctatatgaaggaaacttgaggaaccacttatgtaggaaagtgta |
3340663 |
T |
|
| Q |
101 |
agtatcattggctgtttcataaatttatgtgagtattttgtatcagcaaggaaaaatagaaaatgtagcatatattttagggaaaatgtaacattttaat |
200 |
Q |
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| T |
3340662 |
agtatcattagctgtttcataaatttatgtgagtattttgtatcagcaaggaaaaatagaaaatgtagcatatattttagggaaaatgtaacattttaat |
3340563 |
T |
|
| Q |
201 |
atgcatgaaagattttagattaagaaaaatacctgtgaaatcatctcccaattgtttgtattcactggttgtatttgagtaggaaaatccaactccaaca |
300 |
Q |
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| T |
3340562 |
atgcatgaaagattttagattaagtaaaatacctgtgaaatcatctcccaattgtttgtattcactggttgtatttgagtaggaaaatccaactccaaca |
3340463 |
T |
|
| Q |
301 |
ggagattcaaggaataacaggttggcttctgcattgtcacattccacatacaaacatatataaaattctaagtattaacaaaagtaacaatggagtgaca |
400 |
Q |
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| T |
3340462 |
ggagattcaaggaataacaggttggcttctgcattgtcacattccacatacaaacatatataaaattctaagtattaacaaaagtaacaatggagtgaca |
3340363 |
T |
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| Q |
401 |
aaaaatgatcgattttaaaatagaatgact |
430 |
Q |
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| T |
3340362 |
aaaaatgatcgattttaaaatagaatgact |
3340333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 259 - 334
Target Start/End: Complemental strand, 3332931 - 3332856
Alignment:
| Q |
259 |
tattcactggttgtatttgagtaggaaaatccaactccaacaggagattcaaggaataacaggttggcttctgcat |
334 |
Q |
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| T |
3332931 |
tattcactggttgtatttgaataagaaaatccaactccaacaggagattccaagaataacatgtttgcttctgcat |
3332856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 7 - 119
Target Start/End: Complemental strand, 3333164 - 3333052
Alignment:
| Q |
7 |
tgatttcaatacctccatagctctctcctcctatgtacaatgcccttgttctatatgaaggaaacttgaggaaccacttatgtaggaaagtgtaagtatc |
106 |
Q |
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| T |
3333164 |
tgattccaatacctgcatagctctctccggctatgtaaaatgctcttgttctatatgatggatacttgagaaaccaattgtgcagaaatgtgtaagcatc |
3333065 |
T |
|
| Q |
107 |
attggctgtttca |
119 |
Q |
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||| ||||||||| |
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| T |
3333064 |
attagctgtttca |
3333052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 231 - 333
Target Start/End: Original strand, 35794644 - 35794746
Alignment:
| Q |
231 |
acctgtgaaatcatctcccaattgtttgtattcactggttgtatttgagtaggaaaatccaactccaacaggagattcaaggaataacaggttggcttct |
330 |
Q |
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||||||||| ||||| |||||||||| || ||||||||||||||||| |||||||| |||||||| ||||||||||| |||||||||| |||||||||| |
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| T |
35794644 |
acctgtgaagtcatcacccaattgttgataatcactggttgtatttgaataggaaaagccaactccgacaggagattctaggaataacatgttggcttct |
35794743 |
T |
|
| Q |
331 |
gca |
333 |
Q |
| |
|
||| |
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|
| T |
35794744 |
gca |
35794746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 35794417 - 35794522
Alignment:
| Q |
9 |
atttcaatacctccatagctctctcctcctatgtacaatgcccttgttctatatgaaggaaacttgaggaaccacttatgtaggaaagtgtaagtatcat |
108 |
Q |
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|||||||||||| ||||||| |||||| ||||||| |||| | |||||||||| || |||||||||||||| || ||||| ||| |||||| ||||| |
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| T |
35794417 |
atttcaatacctgcatagctttctcctgctatgtaaaatgttttacttctatatgatgggaacttgaggaaccaattgtgtagaaaattgtaagcatcat |
35794516 |
T |
|
| Q |
109 |
tggctg |
114 |
Q |
| |
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|||||| |
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|
| T |
35794517 |
tggctg |
35794522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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