View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7050_low_8 (Length: 222)

Name: NF7050_low_8
Description: NF7050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7050_low_8
NF7050_low_8
[»] chr1 (10 HSPs)
chr1 (18-216)||(46814246-46814444)
chr1 (18-216)||(27031620-27031817)
chr1 (18-209)||(24659033-24659223)
chr1 (18-216)||(7857757-7857954)
chr1 (55-185)||(24449740-24449870)
chr1 (75-175)||(41920619-41920718)
chr1 (74-185)||(5459322-5459432)
chr1 (55-97)||(32882512-32882554)
chr1 (18-95)||(31290921-31290998)
chr1 (55-174)||(5389243-5389361)
[»] chr4 (6 HSPs)
chr4 (18-216)||(2825887-2826084)
chr4 (18-216)||(31050440-31050638)
chr4 (18-196)||(35341139-35341315)
chr4 (120-185)||(20464796-20464861)
chr4 (74-185)||(8255188-8255298)
chr4 (74-185)||(8268606-8268716)
[»] chr3 (10 HSPs)
chr3 (18-214)||(23328131-23328327)
chr3 (18-216)||(40023350-40023549)
chr3 (18-216)||(45398900-45399099)
chr3 (18-162)||(21342639-21342784)
chr3 (74-174)||(19176665-19176764)
chr3 (23-217)||(43012484-43012678)
chr3 (42-185)||(47235826-47235969)
chr3 (42-149)||(45163983-45164090)
chr3 (42-176)||(2392325-2392459)
chr3 (42-176)||(2394089-2394223)
[»] chr2 (12 HSPs)
chr2 (18-216)||(5254360-5254553)
chr2 (18-210)||(7874395-7874586)
chr2 (18-209)||(14106308-14106499)
chr2 (74-207)||(7460836-7460969)
chr2 (26-216)||(14405310-14405500)
chr2 (18-216)||(387278-387476)
chr2 (42-174)||(10524228-10524360)
chr2 (18-149)||(16952230-16952361)
chr2 (18-149)||(17022895-17023026)
chr2 (18-149)||(17060201-17060332)
chr2 (55-149)||(39338711-39338805)
chr2 (170-216)||(14437046-14437092)
[»] chr8 (9 HSPs)
chr8 (18-215)||(35816026-35816220)
chr8 (18-216)||(38577567-38577767)
chr8 (50-216)||(15821157-15821324)
chr8 (55-176)||(31207181-31207302)
chr8 (18-176)||(20138529-20138689)
chr8 (75-175)||(34388827-34388925)
chr8 (74-176)||(41893221-41893322)
chr8 (55-175)||(37986678-37986798)
chr8 (55-163)||(12898107-12898215)
[»] chr7 (11 HSPs)
chr7 (22-216)||(35745601-35745799)
chr7 (75-207)||(6585043-6585176)
chr7 (18-166)||(34390066-34390214)
chr7 (18-148)||(8745255-8745388)
chr7 (18-206)||(48161817-48162002)
chr7 (75-176)||(3867278-3867378)
chr7 (37-185)||(31971944-31972092)
chr7 (55-185)||(47325695-47325825)
chr7 (18-176)||(44353382-44353542)
chr7 (42-164)||(38306389-38306511)
chr7 (18-95)||(24324699-24324776)
[»] chr5 (3 HSPs)
chr5 (74-175)||(34378259-34378359)
chr5 (75-208)||(7161803-7161935)
chr5 (74-185)||(18593404-18593514)
[»] chr6 (1 HSPs)
chr6 (18-84)||(20701716-20701782)
[»] scaffold0050 (1 HSPs)
scaffold0050 (18-95)||(36811-36888)
[»] scaffold0343 (1 HSPs)
scaffold0343 (55-174)||(5847-5966)


Alignment Details
Target: chr1 (Bit Score: 171; Significance: 5e-92; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 46814444 - 46814246
Alignment:
Q  18 gatcggaggtcgagaggttgcagaagctgcaagttcattcggttaggagcttttcgaatgtggctcagcgtgggtgttgaagtatgggggttttatttcg 117  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  46814444 gatcggatgtcgagaggttgcagaagctgcaagttcattcgattaggagcttttcgaatgtggctcggcgtgggtgttgaagtatgggagttttatttcg 46814345  T
Q  118 aggggtgttatttggaggtgagtagtgacgatagatggttgtggatactgtgtttacagggtttgtttctgttaaggtgtctgtcttaggtgatgatgt 216  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  46814344 aggggtgttatttggaggtgagtagtgacgatggacggttgtggatactgtgtttacagggtttgtttctgttaaggtgtctgtcttaggtggtgatgt 46814246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 27031817 - 27031620
Alignment:
Q  18 gatcggaggtcgagaggttgcagaagctgcaagttcattcggttaggagcttttcgaatgtggctcagcgtgggtgttgaagtatgggggttttatttcg 117  Q
    |||||||||| |||||||||  ||||||||| ||||||||||||| ||||||||||||||||||||||  ||| ||||||||| |||| ||||||||| |    
T  27031817 gatcggaggttgagaggttgtggaagctgcatgttcattcggttaagagcttttcgaatgtggctcagtttggatgttgaagtctgggagttttattttg 27031718  T
Q  118 aggggtgttatttggaggtgagtagtgacgatagatggttgtggatactgtgtttacagggtttgtttctgttaaggtgtctgtcttaggtgatgatgt 216  Q
    ||||||||| | ||| ||||||||||||||||||   ||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  27031717 aggggtgttctctgg-ggtgagtagtgacgataggccgttatggatactgtgtttacagggtttgtttctgttaaggtgtccgtcttaggtggtgatgt 27031620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 24659033 - 24659223
Alignment:
Q  18 gatcggaggtcgagaggttgcagaagctgcaagttcattcggttaggagcttttcgaatgtggctcagcgtgggtgttgaagtatgggggttttatttcg 117  Q
    ||||||||||||||||||||  |||||  || |||||||||||||| |||||||||||||||||||||| |||| ||| |||| |||| ||||||||| |    
T  24659033 gatcggaggtcgagaggttgtggaagcatcatgttcattcggttagaagcttttcgaatgtggctcagcctgggagtt-aagtctgggagttttattttg 24659131  T
Q  118 aggggtgttatttggaggtgagtagtgacgatagatggttgtggatactgtgtttacagggtttgtttctgttaaggtgtctgtcttaggtg 209  Q
    ||||||||||||||| |||||||||||||||| | ||||| ||| |||||||||||||  |||||||||| ||||||||||  |||||||||    
T  24659132 aggggtgttatttgggggtgagtagtgacgatgggtggttatggttactgtgtttacaatgtttgtttcttttaaggtgtccatcttaggtg 24659223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 7857757 - 7857954
Alignment:
Q  18 gatcggaggtcgagaggttgcagaagctgcaagttcattcggttaggagcttttcgaatgtggctcagcgtgggtgttgaagtatgggggttttatttcg 117  Q
    |||||| |||||||||||||  ||||||||  || |||||||||||||||||||  ||||||||||||  ||||||||||||| |||| ||||||||| |    
T  7857757 gatcggtggtcgagaggttgtggaagctgcttgtccattcggttaggagcttttgaaatgtggctcagtttgggtgttgaagtctgggagttttattttg 7857856  T
Q  118 aggggtgttatttggaggtgagtagtgacgatagatggttgtggatactgtgtttacag-ggtttgtttctgttaaggtgtctgtcttaggtgatgatgt 216  Q
    ||||||||| | ||| ||||||||||| |||| | |||||||||  || |||||||||| | |||||||||||||||||||| |||||||||||||||||    
T  7857857 aggggtgttctatgggggtgagtagtggcgatgggtggttgtgg--accgtgtttacagtgttttgtttctgttaaggtgtccgtcttaggtgatgatgt 7857954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 55 - 185
Target Start/End: Complemental strand, 24449870 - 24449740
Alignment:
Q  55 ttcggttaggagcttttcgaa-tgtggctcagcgtgggtgttgaagtatgggggttttatttcgaggggtgttatttggaggtgagtagtgacgatagat 153  Q
    |||||||||| ||| |||||| || |||||||| |||||||||  || | || ||||||||| ||||| |||||||||  |||||||||||||||| |      
T  24449870 ttcggttaggtgctcttcgaaatgcggctcagcttgggtgttggggtctaggagttttattttgaggg-tgttatttgtgggtgagtagtgacgatgggc 24449772  T
Q  154 ggttgtggatactgtgtttacagggtttgttt 185  Q
    ||| |||||||| |||||||||| | ||||||    
T  24449771 ggtggtggataccgtgtttacagtgcttgttt 24449740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 175
Target Start/End: Original strand, 41920619 - 41920718
Alignment:
Q  75 atgtggctcagcgtgggtgttgaagtatgggggttttatttcgaggggtgttatttggaggtgagtagtgacgatagatggttgtggatactgtgtttac 174  Q
    |||||||||||| |||||||||  || | || ||||||||| ||||| |||| ||||  ||||||||||||||||||  ||| ||| |||| ||||||||    
T  41920619 atgtggctcagcttgggtgttggggtcttggagttttattttgaggg-tgttttttgtgggtgagtagtgacgataggcggtggtgaataccgtgtttac 41920717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 185
Target Start/End: Original strand, 5459322 - 5459432
Alignment:
Q  74 aatgtggctcagcgtgggtgttgaagtatgggggttttatttcgaggggtgttatttggaggtgagtagtgacgatagatggttgtggatactgtgttta 173  Q
    ||||||||||||| |||||||||  || |||  ||||||||| || || |||| ||||  |||||||||||||||| |  ||| |||||||| |||||||    
T  5459322 aatgtggctcagcttgggtgttggggtctggaagttttattttgatgg-tgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgttta 5459420  T
Q  174 cagggtttgttt 185  Q
    ||| | ||||||    
T  5459421 cagtgattgttt 5459432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 97
Target Start/End: Original strand, 32882512 - 32882554
Alignment:
Q  55 ttcggttaggagcttttcgaatgtggctcagcgtgggtgttga 97  Q
    |||||| ||||||||||||||||||||||||| | ||||||||    
T  32882512 ttcggtcaggagcttttcgaatgtggctcagctttggtgttga 32882554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 31290998 - 31290921
Alignment:
Q  18 gatcggaggtcgagaggttgcagaagctgcaagttcattcggttaggagcttttcgaatgtggctcagcgtgggtgtt 95  Q
    |||||||||||||||||| |  |||| |||  | || ||||| ||||||||||||| |||||||||||| | ||||||    
T  31290998 gatcggaggtcgagaggtggtggaagttgcttgatctttcggataggagcttttcggatgtggctcagctttggtgtt 31290921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 174
Target Start/End: Complemental strand, 5389361 - 5389243
Alignment:
Q  55 ttcggttaggagcttttcga-atgtggctcagcgtgggtgttgaagtatgggggttttatttcgaggggtgttatttggaggtgagtagtgacgatagat 153  Q
    |||||||| | ||| ||||| |||||||||||| |||||||||  || |||| ||||||||| || |||||||  ||| | ||||||||||||||| |      
T  5389361 ttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttga-gggtgtt-cttgtaagtgagtagtgacgatgggc 5389264  T
Q  154 ggttgtggatactgtgtttac 174  Q
    ||| |||||||| ||||||||    
T  5389263 ggtggtggataccgtgtttac 5389243  T

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Target: chr4 (Bit Score: 115; Significance: 1e-58; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 2825887 - 2826084
Alignment:
Q  18 gatcggaggtcgagaggttgcagaagctgcaagttcattcggttaggagcttttcgaatgtggctcagcgtgggtgttgaagtatgggggttttatttcg 117  Q
    ||||||||||| ||||||||  ||||||||| |||||||||||||||||||||||||| |||| ||||  ||||||||||||| |||| ||||||||| |    
T  2825887 gatcggaggtctagaggttgtggaagctgcatgttcattcggttaggagcttttcgaaggtggttcagtttgggtgttgaagtttgggagttttattttg 2825986  T
Q  118 aggggtgttatttggaggtgagtagtgacgatagatggttgtggatactgtgtttacagggtttgtttctgttaaggtgtctgtcttaggtgatgatgt 216  Q
    ||||||||| | ||| |||||||||||||||| |   ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2825987 aggggtgttctctgg-ggtgagtagtgacgatgggacgttgtggatactgcgtttacagggtttgtttctgttaaggtgtttgtcttaggtgatgatgt 2826084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 31050638 - 31050440
Alignment:
Q  18 gatcggaggtcgagaggttgcagaagctgcaagttcattcggttaggagcttttcgaatgtggctcagcgtgggtgttgaagtatgggggttttatttcg 117  Q
    ||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||| ||||||| ||| ||||||||||||| |||  ||||||||| |    
T  31050638 gatcggaggtcgagaggttgtggaagctgcatgttcattcggttaggagcttttcgattgtggctaagcttgggtgttgaagtctggctgttttattttg 31050539  T
Q  118 aggggtgttatttggaggtgagtagtgacgatagatggttgtggatactgtgtttacagggtttgtttctgttaaggtgtctgtcttaggtgatgatgt 216  Q
    |||||||||  |||| |||||||||||||||| |||| | ||||||  ||||||||||| ||||| ||||||| ||||||  |||||||||| ||||||    
T  31050538 aggggtgttccttgggggtgagtagtgacgatggatgatggtggatgttgtgtttacagtgtttgcttctgttgaggtgttcgtcttaggtggtgatgt 31050440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 35341315 - 35341139
Alignment:
Q  18 gatcggaggtcgagaggttgcagaagctgcaagttcattcggttaggagcttttcgaatgtggctcagcgtgggtgttgaagtatgggggttttatttcg 117  Q
    |||||||| |||||||||||  ||||||||| |||||||| |||| ||||||||||||||||||||||  | ||||||||||| |||| ||||||||| |    
T  35341315 gatcggagttcgagaggttgtggaagctgcatgttcattcagttatgagcttttcgaatgtggctcag-tttggtgttgaagtttgggagttttattttg 35341217  T
Q  118 aggggtgttatttggaggtgagtagtgacgatagatggttgtggatactgtgtttacagggtttgtttctgttaaggtg 196  Q
    ||||||||| | ||| |||||||||||||||| | |||||| ||||||||||||||||| |||||||| ||||||||||    
T  35341216 aggggtgttctctgg-ggtgagtagtgacgatgggtggttgcggatactgtgtttacagtgtttgtttttgttaaggtg 35341139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 20464796 - 20464861
Alignment:
Q  120 gggtgttatttggaggtgagtagtgacgatagatggttgtggatactgtgtttacagggtttgttt 185  Q
    ||||||||||||| |||||||||||||||| |  ||| |||||||| |||||||||||||||||||    
T  20464796 gggtgttatttgggggtgagtagtgacgatgggcggtggtggataccgtgtttacagggtttgttt 20464861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 185
Target Start/End: Original strand, 8255188 - 8255298
Alignment:
Q  74 aatgtggctcagcgtgggtgttgaagtatgggggttttatttcgaggggtgttatttggaggtgagtagtgacgatagatggttgtggatactgtgttta 173  Q
    ||||||||||||| ||||||||   || || | ||||||||| ||||| |||| ||||  |||||||||||||||| |   || ||||||||||||||||    
T  8255188 aatgtggctcagcttgggtgttagggtctgtgagttttattttgaggg-tgttctttgtgggtgagtagtgacgatgggatgtggtggatactgtgttta 8255286  T
Q  174 cagggtttgttt 185  Q
    ||| | ||||||    
T  8255287 cagtgcttgttt 8255298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 185
Target Start/End: Original strand, 8268606 - 8268716
Alignment:
Q  74 aatgtggctcagcgtgggtgttgaagtatgggggttttatttcgaggggtgttatttggaggtgagtagtgacgatagatggttgtggatactgtgttta 173  Q
    ||||||||||||| ||||||||   || || | ||||||||| ||||| |||| ||||  |||||||||||||||| |   || ||||||||||||||||    
T  8268606 aatgtggctcagcttgggtgttagggtctgtgagttttattttgaggg-tgttctttgtgggtgagtagtgacgatgggatgtggtggatactgtgttta 8268704  T
Q  174 cagggtttgttt 185  Q
    ||| | ||||||    
T  8268705 cagtgcttgttt 8268716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 23328327 - 23328131
Alignment:
Q  18 gatcggaggtcgagaggttgcagaagctgcaagttcattcggttaggagcttttcgaatgtggctcagcgtgggtgttgaagtatgggggttttatttcg 117  Q
    ||||||||||||||||||||  |||||| |  ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||| |    
T  23328327 gatcggaggtcgagaggttgtggaagctccttgttcattcggttaggagcttttcgaatgtggctcagcttgggtgttgaagtctgggagttttattttg 23328228  T
Q  118 aggggtgttatttggaggtgagtagtgacgatagatggttgtggatactgtgtttacagggtttgtttctgttaaggtgtctgtcttaggtgatgat 214  Q
    || |||||| ||||| |||||||||||||||| | |||||||||||| |||| |||||| ||||||||||||||||  ||| |||||||||| ||||    
T  23328227 agtggtgttctttgggggtgagtagtgacgatgggtggttgtggatattgtgcttacagtgtttgtttctgttaagaggtccgtcttaggtggtgat 23328131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 40023549 - 40023350
Alignment:
Q  18 gatcggaggtcgagaggttgcagaagctgcaagttcattcggttaggagcttttcgaatgtggctcagcgtgggtgttgaagtatgggggttttatttcg 117  Q
    |||| |||| || |||||||  ||||||||| |||||||||||||||||||||||||||||||||||||  |||||||| ||| |||| ||||||||| |    
T  40023549 gatcagaggacgggaggttgtggaagctgcatgttcattcggttaggagcttttcgaatgtggctcagctagggtgttgtagtctgggagttttattttg 40023450  T
Q  118 aggggtgttatttggaggtgagtagtgacgatagatggttgtggatactgtgtttacag-ggtttgtttctgttaaggtgtctgtcttaggtgatgatgt 216  Q
    ||||| ||| ||| | | |||||||||||||| ||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||| ||||||    
T  40023449 aggggcgttcttttgggatgagtagtgacgatggatggttgtggataccgtgtttacagtgttttgtttctgttaaggtgtctgtcttaggtggtgatgt 40023350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 45398900 - 45399099
Alignment:
Q  18 gatcggaggtcgagaggttgcagaagctgcaagttcattcggttaggagcttttcgaatgtggctcagcgtgggtgttgaagtatgggggttttatttcg 117  Q
    ||||||||||||||||||||  ||||||||| ||||||||||||| |||||||||||||||||| || | | ||||||||||| |||| ||| ||||| |    
T  45398900 gatcggaggtcgagaggttgtggaagctgcatgttcattcggttatgagcttttcgaatgtggcgcaacttaggtgttgaagtttgggagttctattttg 45398999  T
Q  118 aggggtgttatttggaggtgagtagtgacgatagatggttgtggatactgtgtttacag-ggtttgtttctgttaaggtgtctgtcttaggtgatgatgt 216  Q
     ||||||||  |||| |||||||||||||||| |||| ||||||||| ||||||||||| | |||||||||||||||||||| |||||||||| ||||||    
T  45399000 tggggtgttcgttgggggtgagtagtgacgatggatgattgtggatattgtgtttacagtgttttgtttctgttaaggtgtccgtcttaggtggtgatgt 45399099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 21342639 - 21342784
Alignment:
Q  18 gatcggaggtcgagaggttgcagaagctgcaagttcattcggttaggagcttttcgaatgtggctcagcgtgggtgttgaagtatgggggttttatttcg 117  Q
    |||| |||||||||||||||  ||||||||  |||||||||||||| |||||||||||||||||||  | ||||||||||||| || | |||||||| |     
T  21342639 gatcagaggtcgagaggttgtggaagctgcttgttcattcggttagaagcttttcgaatgtggctcgacttgggtgttgaagtctgagagttttattcca 21342738  T
Q  118 aggggtgtt-atttggaggtgagtagtgacgatagatggttgtgga 162  Q
    |||||||||  ||||| ||||||| |||| ||||  ||||||||||    
T  21342739 aggggtgttcgtttgggggtgagttgtgatgataagtggttgtgga 21342784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 74 - 174
Target Start/End: Original strand, 19176665 - 19176764
Alignment:
Q  74 aatgtggctcagcgtgggtgttgaagtatgggggttttatttcgaggggtgttatttggaggtgagtagtgacgatagatggttgtggatactgtgttta 173  Q
    ||||||||||||| ||||||| |  || |||| ||||||||| ||||| |||| ||| | |||||||||||||||| |||||| ||||||||||||||||    
T  19176665 aatgtggctcagcttgggtgtcggggtctgggtgttttattttgaggg-tgttctttaggggtgagtagtgacgatggatggtggtggatactgtgttta 19176763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 23 - 217
Target Start/End: Original strand, 43012484 - 43012678
Alignment:
Q  23 gaggtcgagaggttgcagaagctgcaagttcattcggttaggagcttttcgaa-tgtggctcagcgtgggtgttgaagtatgggggttttatttcgaggg 121  Q
    ||||||| |||||||  |||| |||| | || |||||| ||| ||| |||||| ||||||||||| |||||||||  || | || |||||| || |||||    
T  43012484 gaggtcgcgaggttgtggaagttgcatgatcgttcggtcaggtgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttaatttgaggg 43012583  T
Q  122 gtgttatttggaggtgagtagtgacgatagatggttgtggatactgtgtttacagggtttgtttctgttaaggtgtctgtcttaggtgatgatgtc 217  Q
     |||| ||||||||||||||||| |||| || ||  |||||||| |||||||||  | |||||| ||| |||| |||||| |||| || |||||||    
T  43012584 -tgttctttggaggtgagtagtggcgatggacgggggtggataccgtgtttacaatgcttgtttttgtgaaggagtctgttttagatggtgatgtc 43012678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 185
Target Start/End: Original strand, 47235826 - 47235969
Alignment:
Q  42 agctgcaagttcattcggttaggagcttttcgaa-tgtggctcagcgtgggtgttgaagtatgggggttttatttcgaggggtgttatttggaggtgagt 140  Q
    ||||||| | || |||||||||| ||| |||||| ||||| ||||| |||||||||  || || | ||||||||| ||||| |||| ||||  |||||||    
T  47235826 agctgcatgatccttcggttaggtgctcttcgaaatgtggttcagcttgggtgttggggtctgcgagttttattttgaggg-tgttctttgtgggtgagt 47235924  T
Q  141 agtgacgatagatggttgtggatactgtgtttacagggtttgttt 185  Q
    ||||||||| || ||| |||||||| |||||||||| | ||||||    
T  47235925 agtgacgatggacggtggtggataccgtgtttacagtgcttgttt 47235969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 149
Target Start/End: Original strand, 45163983 - 45164090
Alignment:
Q  42 agctgcaagttcattcggttaggagcttttcgaa-tgtggctcagcgtgggtgttgaagtatgggggttttatttcgaggggtgttatttggaggtgagt 140  Q
    ||||||| | || |||||||||| ||| |||||| ||||||| ||| |||||||||  || | || ||||||||| ||||| ||||||||| |||||| |    
T  45163983 agctgcatgatccttcggttaggtgctcttcgaaatgtggcttagcttgggtgttggggtctaggagttttattttgaggg-tgttatttgtaggtgatt 45164081  T
Q  141 agtgacgat 149  Q
    |||||||||    
T  45164082 agtgacgat 45164090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 176
Target Start/End: Complemental strand, 2392459 - 2392325
Alignment:
Q  42 agctgcaagttcattcggttaggagcttttcgaa-tgtggctcagcgtgggtgttgaagtatgggggttttatttcgaggggtgttatttggaggtgagt 140  Q
    ||||||| | || ||||||||||| || ||| || ||||||||||| |||||||||  || | || ||||||||| |   |||||||||||  |||||||    
T  2392459 agctgcatgatccttcggttaggatctcttcaaaatgtggctcagcttgggtgttggggtctaggagttttattttg-taggtgttatttgtgggtgagt 2392361  T
Q  141 agtgacgatagatggttgtggatactgtgtttacag 176  Q
    ||||||||| |  ||| |||||||| ||||||||||    
T  2392360 agtgacgatgggcggtggtggataccgtgtttacag 2392325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 176
Target Start/End: Complemental strand, 2394223 - 2394089
Alignment:
Q  42 agctgcaagttcattcggttaggagcttttcgaa-tgtggctcagcgtgggtgttgaagtatgggggttttatttcgaggggtgttatttggaggtgagt 140  Q
    ||||||| | || ||||||||||| || ||| || ||||||||||| |||||||||  || | || ||||||||| |   |||||||||||  |||||||    
T  2394223 agctgcatgatccttcggttaggatctcttcaaaatgtggctcagcttgggtgttggggtctaggagttttattttg-taggtgttatttgtgggtgagt 2394125  T
Q  141 agtgacgatagatggttgtggatactgtgtttacag 176  Q
    ||||||||| |  ||| |||||||| ||||||||||    
T  2394124 agtgacgatgggcggtggtggataccgtgtttacag 2394089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 1e-55; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 5254360 - 5254553
Alignment:
Q  18 gatcggaggtcgagaggttgcagaagctgcaagttcattcggttaggagcttttcgaatgtggctcagcgtgggtgttgaagtatgggggttttatttcg 117  Q
    ||||||||||||||||||||  ||||||||| |||||||||||| |||||||||||||||||||||||  ||||||||||||| || | ||||| |   |    
T  5254360 gatcggaggtcgagaggttgtggaagctgcatgttcattcggtttggagcttttcgaatgtggctcagtttgggtgttgaagtctgagagtttttt---g 5254456  T
Q  118 aggggtgttatttggaggtgagtagtgacgatagatggttgtggatactgtgtttacagggtttgtttctgttaaggtgtctgtcttaggtgatgatgt 216  Q
    ||||||||| |||||  ||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||    
T  5254457 aggggtgttctttgg--gtgagtagtgacgatgggtggttgtggatactgtgtttacagtgtttgtttctgttaaggtgtccgtcttaggtggtgatgt 5254553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 7874395 - 7874586
Alignment:
Q  18 gatcggaggtcgagaggttgcagaagctgcaagttcattcggttaggagcttttcgaatgtggctcagcgtgggtgttgaagtatgggggttttatttcg 117  Q
    ||||||||||||||||||||  ||| || |  ||||||| ||||||||||||||||||||||||||||| ||||||||||||| | || ||||||||| |    
T  7874395 gatcggaggtcgagaggttgtggaaactacttgttcatttggttaggagcttttcgaatgtggctcagcttgggtgttgaagtcttggagttttattttg 7874494  T
Q  118 aggggtgttatttggaggtgagtagtgacgatagatggttgtggatactgtgtttacagggtttgtttctgttaaggtgtctgtcttaggtga 210  Q
    |||| |||| ||||| |||||||||||||||| | |||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||    
T  7874495 agggatgttctttgg-ggtgagtagtgacgatgggtggttgtggatactgtgtttacagtgtttgtttctgtcaaggtgtccgtcttaggtga 7874586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 14106499 - 14106308
Alignment:
Q  18 gatcggaggtcgagaggttgcagaagctgcaagttcattcggttaggagcttttcgaatgtggctcagcgtgggtgttgaagtatgggggttttatttcg 117  Q
    |||| |||||||||||||||  |||| || | | ||||||||||| ||||||| ||||||||||||||| ||||||||||||| || | ||||||||| |    
T  14106499 gatcagaggtcgagaggttgtggaagttgtatgatcattcggttaagagctttacgaatgtggctcagcttgggtgttgaagtctgagagttttattttg 14106400  T
Q  118 aggggtgttatttggaggtgagtagtgacgatagatggttgtggatactgtgtttacagggtttgtttctgttaaggtgtctgtcttaggtg 209  Q
    ||||||||| ||||| ||||||||||||||||   |||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||    
T  14106399 aggggtgttctttgggggtgagtagtgacgatgagtggttgtggatactgtgtttacaatgtttgtttctgttaaggtgtccgtcttaggtg 14106308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 74 - 207
Target Start/End: Original strand, 7460836 - 7460969
Alignment:
Q  74 aatgtggctcagcgtgggtgttgaagtatgggggttttatttcgaggggtgttatttggaggtgagtagtgacgatagatggttgtggatactgtgttta 173  Q
    ||||||||||||| ||||||||||||| |||| ||||||||| |||||||||| ||||| | ||||||||||||||   |||||||||||| ||||||||    
T  7460836 aatgtggctcagcttgggtgttgaagtctgggagttttattttgaggggtgttctttggggttgagtagtgacgatgtgtggttgtggatattgtgttta 7460935  T
Q  174 cagggtttgtttctgttaaggtgtctgtcttagg 207  Q
    ||| ||||||||||||||||||||| ||||||||    
T  7460936 cagtgtttgtttctgttaaggtgtccgtcttagg 7460969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 26 - 216
Target Start/End: Original strand, 14405310 - 14405500
Alignment:
Q  26 gtcgagaggttgcagaagctgcaagttcattcggttaggagcttttcgaatgtggctcagcgtgggtgttgaagtatgggggttttatttcgaggggtgt 125  Q
    |||||| |||||  ||| ||||| ||||||| |||||||||||| ||| |||||||||  | ||||||||||||| |||| ||||||||| ||||| |||    
T  14405310 gtcgagtggttgtggaaactgcacgttcatttggttaggagcttgtcgcatgtggctcgacttgggtgttgaagtctgggagttttattttgagggatgt 14405409  T
Q  126 t-atttggaggtgagtagtgacgatagatggttgtggatactgtg-tttacagggtttgtttctgttaaggtgtctgtcttaggtgatgatgt 216  Q
    |  ||||| ||||||||||||| || | || ||||||  |||||| |||| || |||| ||| |||||||||||| |||||||||| ||||||    
T  14405410 tcttttgggggtgagtagtgacaatgggtgattgtgg--actgtgttttatagtgtttatttttgttaaggtgtccgtcttaggtggtgatgt 14405500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 387278 - 387476
Alignment:
Q  18 gatcggaggtcgagaggttgcagaagctgcaagttcattcggttaggagcttttcga-atgtggctcagcgtgggtgttgaagtatgggggttttatttc 116  Q
    |||||||||||  ||||||   ||||||||| |||||||| || ||| ||| ||||| | |||||||||| |||||||||  || |||| |||||||||     
T  387278 gatcggaggtcacgaggttttggaagctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttggggtctgggagttttatttt 387377  T
Q  117 gaggggtgttatttggaggtgagtagtgacgatagatggttgtggatactgtgtttacagggtttgtttctgttaaggtgtctgtcttaggtgatgatgt 216  Q
    || ||||||| ||||| ||||| |||||||||| |  ||| ||| ||  ||||||||||  | |||||| ||| |||| |||||| ||||||| ||||||    
T  387378 ga-gggtgttctttgggggtgaatagtgacgatgggcggtggtgaattttgtgtttacaatgcttgtttttgtgaaggagtctgttttaggtggtgatgt 387476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 42 - 174
Target Start/End: Original strand, 10524228 - 10524360
Alignment:
Q  42 agctgcaagttcattcggttaggagcttttcga-atgtggctcagcgtgggtgttgaagtatgggggttttatttcgaggggtgttatttggaggtgagt 140  Q
    ||||||| | || |||||||||| ||| ||||| |||||||||||| |||||||||  || |||| ||||||||| || ||||||| ||||  |||||||    
T  10524228 agctgcatgatccttcggttaggtgctcttcgatatgtggctcagcttgggtgttggggtttgggagttttatttgga-gggtgttctttgtgggtgagt 10524326  T
Q  141 agtgacgatagatggttgtggatactgtgtttac 174  Q
    ||||||||| |  ||| |||||||| ||||||||    
T  10524327 agtgacgatgggcggtggtggataccgtgtttac 10524360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 16952361 - 16952230
Alignment:
Q  18 gatcggaggtcgagaggttgcagaagctgcaagttcattcggttaggagcttttcgaatgtggctcagcgtgggtgttgaagtatgggggttttatttcg 117  Q
    |||||||||| ||||||| |  ||||||  | | || ||||| ||||||||||||| |||||| ||| | | |||||||| |  |||| |||| |||| |    
T  16952361 gatcggaggttgagaggtggtggaagctaaacgatctttcggataggagcttttcggatgtggatcaactttggtgttgaggactgggagtttcatttag 16952262  T
Q  118 aggggtgttatttggaggtgagtagtgacgat 149  Q
    ||||||||| ||||| ||||||||||||||||    
T  16952261 aggggtgttctttgggggtgagtagtgacgat 16952230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 17023026 - 17022895
Alignment:
Q  18 gatcggaggtcgagaggttgcagaagctgcaagttcattcggttaggagcttttcgaatgtggctcagcgtgggtgttgaagtatgggggttttatttcg 117  Q
    |||||||||| ||||||| |  ||||||  | | || ||||| ||||||||||||| |||||| ||| | | |||||||| |  |||| |||| |||| |    
T  17023026 gatcggaggttgagaggtggtggaagctaaacgatctttcggataggagcttttcggatgtggatcaactttggtgttgaggactgggagtttcatttag 17022927  T
Q  118 aggggtgttatttggaggtgagtagtgacgat 149  Q
    ||||||||| ||||| ||||||||||||||||    
T  17022926 aggggtgttctttgggggtgagtagtgacgat 17022895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 17060332 - 17060201
Alignment:
Q  18 gatcggaggtcgagaggttgcagaagctgcaagttcattcggttaggagcttttcgaatgtggctcagcgtgggtgttgaagtatgggggttttatttcg 117  Q
    |||||||||| ||||||| |  ||||||  | | || ||||| ||||||||||||| |||||| ||| | | |||||||| |  |||| |||| |||| |    
T  17060332 gatcggaggttgagaggtggtggaagctaaacgatctttcggataggagcttttcggatgtggatcaactttggtgttgaggactgggagtttcatttag 17060233  T
Q  118 aggggtgttatttggaggtgagtagtgacgat 149  Q
    ||||||||| ||||| ||||||||||||||||    
T  17060232 aggggtgttctttgggggtgagtagtgacgat 17060201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 149
Target Start/End: Complemental strand, 39338805 - 39338711
Alignment:
Q  55 ttcggttaggagcttttcgaat-gtggctcagcgtgggtgttgaagtatgggggttttatttcgaggggtgttatttggaggtgagtagtgacgat 149  Q
    |||||||||| ||| ||||||| ||| |||||| |||||||||| || |||| ||||||||| ||||| |||| ||||  ||||||||||||||||    
T  39338805 ttcggttaggtgctcttcgaattgtgactcagcttgggtgttgaggtctgggagttttattttgaggg-tgttctttgtgggtgagtagtgacgat 39338711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 14437092 - 14437046
Alignment:
Q  170 tttacagggtttgtttctgttaaggtgtctgtcttaggtgatgatgt 216  Q
    ||||||| ||||||||||||||||||||  |||||||||||||||||    
T  14437092 tttacagtgtttgtttctgttaaggtgttcgtcttaggtgatgatgt 14437046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 35816220 - 35816026
Alignment:
Q  18 gatcggaggtcgagaggttgcagaagctgcaagttcattcggttaggagcttttcgaatgtggctcagcgtgggtgttgaagtatgggggttttatttcg 117  Q
    |||||||||| ||||| |||  ||||||||| ||||||||||||| ||| ||||||||||||||||||  ||| |||||||||  | | ||||| |   |    
T  35816220 gatcggaggttgagagattgtggaagctgcatgttcattcggttaagagtttttcgaatgtggctcagtttggatgttgaagtcagagagtttttt---g 35816124  T
Q  118 aggggtgttatttggaggtgagtagtgacgatagatggttgtggatactgtgtttacagggtttgtttctgttaaggtgtctgtcttaggtgatgatg 215  Q
    ||||||||| ||||| |||||||||||| ||| | |||||||||||||||||||||||  |||||||||||||||||||||||||||| ||| |||||    
T  35816123 aggggtgttctttgggggtgagtagtgatgatgggtggttgtggatactgtgtttacaatgtttgtttctgttaaggtgtctgtcttaagtggtgatg 35816026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 38577767 - 38577567
Alignment:
Q  18 gatcggaggtcgagaggttgcagaagctgcaagttcattcggttaggagcttttcgaatgtggctcagcgtgggtgttgaagtatgggg-gttttatttc 116  Q
    |||| ||||||||||| |||  ||||||||| |||||||||||| |||||||||||||| |||| || | ||||||||||||| ||||| |||||||||     
T  38577767 gatcagaggtcgagagtttgtggaagctgcatgttcattcggtttggagcttttcgaatatggcgcaacttgggtgttgaagtctggggagttttatttt 38577668  T
Q  117 gaggggtgttatttggaggtgagtagtgacgatagatggttgtggatactgtgtttacag-ggtttgtttctgttaaggtgtctgtcttaggtgatgatg 215  Q
    | || ||||| ||||| | |||||||||||||| |||| ||||||||||||||||||||| | ||||||| | || ||||||| |||||||||| |||||    
T  38577667 gtggagtgttctttggggatgagtagtgacgatggatgattgtggatactgtgtttacagtgttttgtttatatttaggtgtccgtcttaggtggtgatg 38577568  T
Q  216 t 216  Q
    |    
T  38577567 t 38577567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 50 - 216
Target Start/End: Complemental strand, 15821324 - 15821157
Alignment:
Q  50 gttcattcggttaggagcttttcgaatgtggctcagcgtgggtgttgaagtatgggggttttatttcgaggggtgttatttggaggtgagtagtgacgat 149  Q
    ||||||| |||||||||||||||||||||||||||||  || ||||||||| |||| ||||||||| |||| ||||| ||| |  |||||||||| ||||    
T  15821324 gttcatttggttaggagcttttcgaatgtggctcagctcggatgttgaagtctgggagttttattttgaggagtgttcttttggagtgagtagtggcgat 15821225  T
Q  150 agatggttgtggatactgtgttta-cagggtttgtttctgttaaggtgtctgtcttaggtgatgatgt 216  Q
       |||||||||||  |||||||| |  | ||||||||||||||||||||||||||||||| ||||||    
T  15821224 gagtggttgtggattttgtgtttaccttgttttgtttctgttaaggtgtctgtcttaggtggtgatgt 15821157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 55 - 176
Target Start/End: Complemental strand, 31207302 - 31207181
Alignment:
Q  55 ttcggttaggagcttttcgaa-tgtggctcagcgtgggtgttgaagtatgggggttttatttcgaggggtgttatttggaggtgagtagtgacgatagat 153  Q
    |||||||||| ||| |||||| ||||||||||| ||||||||| |||||||| ||||||||| || ||||||| ||||  |||||||||||||||| |      
T  31207302 ttcggttaggtgctcttcgaaatgtggctcagcttgggtgttggagtatgggagttttattttga-gggtgttctttgtgggtgagtagtgacgatgggc 31207204  T
Q  154 ggttgtggatactgtgtttacag 176  Q
    | | |||||||||||||||||||    
T  31207203 gatggtggatactgtgtttacag 31207181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 20138529 - 20138689
Alignment:
Q  18 gatcggaggtcgagaggttgcaga-agctgcaagttcattcggttaggagcttttcgaa-tgtggctcagcgtgggtgttgaagtatgggggttttattt 115  Q
    |||||||||||| ||||||   || ||||||| | || |||||||||| ||| |||||| |||| | | || |||||||||  || |||| |||||||||    
T  20138529 gatcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatgtgacccggcttgggtgttggggtctgggagttttattt 20138628  T
Q  116 cgaggggtgttatttggaggtgagtagtgacgatagatggttgtggatactgtgtttacag 176  Q
        ||||||| |||| ||||||||||||||||| || ||| |||||||| ||||||||||    
T  20138629 ttgagggtgttctttgtaggtgagtagtgacgatggacggtggtggataccgtgtttacag 20138689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 175
Target Start/End: Complemental strand, 34388925 - 34388827
Alignment:
Q  75 atgtggctcagcgtgggtgttgaagtatgggggttttatttcgaggggtgttatttggaggtgagtagtgacgatagatggttgtggatactgtgtttac 174  Q
    |||||||||||| |||||||||  ||||| | ||||||||| || ||||||| ||||  ||||||||||||||||||  ||| |||||||| ||||||||    
T  34388925 atgtggctcagcttgggtgttggggtatgagagttttattttga-gggtgttctttgtgggtgagtagtgacgataggcggtggtggatac-gtgtttac 34388828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 176
Target Start/End: Complemental strand, 41893322 - 41893221
Alignment:
Q  74 aatgtggctcagcgtgggtgttgaagtatgggggttttatttcgaggggtgttatttggaggtgagtagtgacgatagatggttgtggatactgtgttta 173  Q
    ||||||||||||| |||||||||| || |||| ||| |||||  |||| |||| ||||  |||||||||||||||| |  ||| |||||||| |||||||    
T  41893322 aatgtggctcagcttgggtgttgaggtctgggagttctattttcaggg-tgttctttgtgggtgagtagtgacgatggtcggtggtggataccgtgttta 41893224  T
Q  174 cag 176  Q
    |||    
T  41893223 cag 41893221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 175
Target Start/End: Complemental strand, 37986798 - 37986678
Alignment:
Q  55 ttcggttaggagcttttcgaa-tgtggctcagcgtgggtgttgaagtatgggggttttatttcgaggggtgttatttggaggtgagtagtgacgatagat 153  Q
    |||||||||| ||| |||||| ||||||||||| ||||||||   || |||| ||||||||| || ||||||| ||||  |||||||| ||||||| | |    
T  37986798 ttcggttaggtgctcttcgaaatgtggctcagcttgggtgtttcggtctgggagttttatttgga-gggtgttctttgtgggtgagtaatgacgatgggt 37986700  T
Q  154 ggttgtggatactgtgtttaca 175  Q
    ||| || ||||| |||||||||    
T  37986699 ggtggtagataccgtgtttaca 37986678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 163
Target Start/End: Complemental strand, 12898215 - 12898107
Alignment:
Q  55 ttcggttaggagcttttcgaa-tgtggctcagcgtgggtgttgaagtatgggggttttatttcgaggggtgttatttggaggtgagtagtgacgatagat 153  Q
    |||||||||| ||| |||||| ||||||||||| |||||||||  || |  | ||||||||| ||||| |||| ||||  ||||||||||||||||  |     
T  12898215 ttcggttaggtgctcttcgaaatgtggctcagcttgggtgttggggtcttagagttttattttgaggg-tgttctttgtgggtgagtagtgacgatgaac 12898117  T
Q  154 ggttgtggat 163  Q
    ||||||||||    
T  12898116 ggttgtggat 12898107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 22 - 216
Target Start/End: Complemental strand, 35745799 - 35745601
Alignment:
Q  22 ggaggtcgagaggttgcagaagctgcaagttcattcggttaggagcttttcga---at-gtggctcagcgtgggtgttgaagtatgggggttttatttcg 117  Q
    |||||| |||||||||  ||||||||| |||||||||||||||||||||||||   || |||||||||| ||||||||||||| ||   ||||||||| |    
T  35745799 ggaggtggagaggttgtggaagctgcatgttcattcggttaggagcttttcgatatatagtggctcagcttgggtgttgaagtctgactgttttattttg 35745700  T
Q  118 aggggtgttatttggaggtgagtagtgacgatagatggttgtggatactgtgtttacagggtttgtttctgttaaggtgtctgtcttaggtgatgatgt 216  Q
    || |||||| ||||| |||||||||||||||| | |||  ||||||  ||||||||  | |||||||||||||||||||||||||||||||| ||||||    
T  35745699 agaggtgttctttgggggtgagtagtgacgatgggtgggggtggatgttgtgtttagtgtgtttgtttctgttaaggtgtctgtcttaggtggtgatgt 35745601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 75 - 207
Target Start/End: Original strand, 6585043 - 6585176
Alignment:
Q  75 atgtggctcagcgtgggtgttgaagtatgggggttttatttcgaggggtgttatttggaggtgagtagtgacgatagatggttgtggatactgtgtttac 174  Q
    |||||||||||| ||||||||||||| |||| ||||||||| |||||||| ||||||||||||||||||||||||   |||||||||||||||||||| |    
T  6585043 atgtggctcagcttgggtgttgaagtctgggagttttattttgaggggtgctatttggaggtgagtagtgacgatgagtggttgtggatactgtgttttc 6585142  T
Q  175 ag-ggtttgtttctgttaaggtgtctgtcttagg 207  Q
    || | |||||||||||||||||||| ||||||||    
T  6585143 agtgttttgtttctgttaaggtgtccgtcttagg 6585176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 34390066 - 34390214
Alignment:
Q  18 gatcggaggtcgagaggttgcagaagctgcaagttcattcggttaggagcttttcgaatgtggctcagcgtgggtgttgaagtatgggggttttatttcg 117  Q
    ||||||||||||||||||||  ||||||||| ||||||||| ||||||||||||| ||||||||||| | ||||||||| ||| |||| ||||||||| |    
T  34390066 gatcggaggtcgagaggttgtggaagctgcatgttcattcgattaggagcttttcaaatgtggctcaacttgggtgttgtagtctgggagttttattttg 34390165  T
Q  118 aggggtgttatttggaggtgagtagtgacgatagatggttgtggatact 166  Q
    ||||||||| ||||| | |||||||||||||| | |||||| |||||||    
T  34390166 aggggtgttctttggggatgagtagtgacgatgggtggttgcggatact 34390214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 8745255 - 8745388
Alignment:
Q  18 gatcggaggtcgagaggttgcagaagctgcaagttcattcggttaggagcttttcgaatgtggctcagcgtgggtgttgaagtatgggggttttatttcg 117  Q
    ||||||||||||||||||||  ||||||||| | || ||| | ||||||||||||| |||||||||||| | |||||| |||  |||| |||| |||| |    
T  8745255 gatcggaggtcgagaggttgtggaagctgcatgatctttcagataggagcttttcggatgtggctcagctttggtgttcaagactgggagtttaattttg 8745354  T
Q  118 aggggtg---ttatttggaggtgagtagtgacga 148  Q
    |||||||   || ||||| |||||||||||||||    
T  8745355 aggggtgtttttctttgggggtgagtagtgacga 8745388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 48162002 - 48161817
Alignment:
Q  18 gatcggaggtcgagaggttgcagaagctgcaagttcattcggttaggagcttttcgaatgtggctcagcgtgggtgttgaagtatgggggttttatttcg 117  Q
    |||| |||||||||||||||  |||| |||  ||||||| |||||| |||||||||||||||||||  | |||  |||||||| || | ||||||||  |    
T  48162002 gatcagaggtcgagaggttgtggaagttgcttgttcattgggttag-agcttttcgaatgtggctcgacttggc-gttgaagtctgagagttttattctg 48161905  T
Q  118 aggggtgtta-tttggaggtgagtagtgacgatagatggttgtggatactgtgtttacagggtttgtttctgttaaggtgtctgtcttag 206  Q
    || ||||||  ||||| ||||| | |||||||||| ||||||||||  |||| |||  || |||||||||| ||||||||||||||||||    
T  48161904 agaggtgttcgtttgggggtgaattgtgacgataggtggttgtgga--ctgtatttctagtgtttgtttctattaaggtgtctgtcttag 48161817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 75 - 176
Target Start/End: Original strand, 3867278 - 3867378
Alignment:
Q  75 atgtggctcagcgtgggtgttgaagtatgggggttttatttcgaggggtgttatttggaggtgagtagtgacgatagatggttgtggatactgtgtttac 174  Q
    |||||||||||| ||||||||| |||||||  ||||||||| ||||| |||| ||||| |||||||||||||||| || ||| |||||||  ||||||||    
T  3867278 atgtggctcagcttgggtgttggagtatggaagttttattttgaggg-tgttctttgggggtgagtagtgacgatggacggtggtggatatcgtgtttac 3867376  T
Q  175 ag 176  Q
    ||    
T  3867377 ag 3867378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 37 - 185
Target Start/End: Complemental strand, 31972092 - 31971944
Alignment:
Q  37 gcagaagctgcaagttcattcggttaggagcttttcgaa-tgtggctcagcgtgggtgttgaagtatgggggttttatttcgaggggtgttatttggagg 135  Q
    ||||||| |||| | || |||||||||| ||| |||||| ||||||||||| |||||||||  || |||| ||||||||| || ||||||| ||||  ||    
T  31972092 gcagaaggtgcatgatccttcggttaggtgctcttcgaaatgtggctcagcttgggtgttggggtctgggagttttatttgga-gggtgttctttgtggg 31971994  T
Q  136 tgagtagtgacgatagatggttgtggatactgtgtttacagggtttgttt 185  Q
    |||||||||||||| |  ||| || ||||| |||||||||| | ||||||    
T  31971993 tgagtagtgacgatgggcggtggttgataccgtgtttacagtgcttgttt 31971944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 55 - 185
Target Start/End: Complemental strand, 47325825 - 47325695
Alignment:
Q  55 ttcggttaggagcttttcgaa-tgtggctcagcgtgggtgttgaagtatgggggttttatttcgaggggtgttatttggaggtgagtagtgacgatagat 153  Q
    |||||||||| ||| |||||| ||||||||||| |||||||||  || |||| ||||||||| || ||||||| ||||  |||||||||||||||| |      
T  47325825 ttcggttaggtgctcttcgaaatgtggctcagcttgggtgttggggtctgggagttttattttga-gggtgttctttgtgggtgagtagtgacgatgggc 47325727  T
Q  154 ggttgtggatactgtgtttacagggtttgttt 185  Q
    | |  |||||||||||||||||| | ||||||    
T  47325726 gatgatggatactgtgtttacagtgcttgttt 47325695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 44353542 - 44353382
Alignment:
Q  18 gatcggaggtcgagaggttgcaga-agctgcaagttcattcggttaggagcttttcgaa-tgtggctcagcgtgggtgttgaagtatgggggttttattt 115  Q
    |||||||||||| ||||||   || ||||||| | || |||||||||| ||| |||||| |||| | | || |||||||||  || |||| |||||||||    
T  44353542 gatcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatgtgacccggcttgggtgttggggtctgggagttttattt 44353443  T
Q  116 cgaggggtgttatttggaggtgagtagtgacgatagatggttgtggatactgtgtttacag 176  Q
        ||||||| |||| ||||||||||||||||| || ||| |||||||| ||||||||||    
T  44353442 ttgagggtgttctttgtaggtgagtagtgacgatggacggtggtggataccgtgtttacag 44353382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 164
Target Start/End: Original strand, 38306389 - 38306511
Alignment:
Q  42 agctgcaagttcattcggttaggagcttttcga-atgtggctcagcgtgggtgttgaagtatgggggttttatttcgaggggtgttatttggaggtgagt 140  Q
    ||||||| | || |||||||| | ||| ||||| |||||||||||| |||||||||  || || | ||||||||| ||||| |||| |||| ||||||||    
T  38306389 agctgcatgatccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgtgagttttattttgaggg-tgttctttgtaggtgagt 38306487  T
Q  141 agtgacgatagatggttgtggata 164  Q
    ||||||||| | |||| |||||||    
T  38306488 agtgacgatgggtggtggtggata 38306511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 24324776 - 24324699
Alignment:
Q  18 gatcggaggtcgagaggttgcagaagctgcaagttcattcggttaggagcttttcgaatgtggctcagcgtgggtgtt 95  Q
    |||||||||||||| ||| |  ||||||| | | || |||||||||||||||||||  ||||||||||| | ||||||    
T  24324776 gatcggaggtcgaggggtggtggaagctgaatgatctttcggttaggagcttttcggctgtggctcagctttggtgtt 24324699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 175
Target Start/End: Original strand, 34378259 - 34378359
Alignment:
Q  74 aatgtggctcagcgtgggtgttgaagtatgggggttttatttcgaggggtgttatttggaggtgagtagtgacgatagatggttgtggatactgtgttta 173  Q
    ||||||||||||| |||||||||  || || | ||||||||| ||||| |||| ||||  |||||||||||||||| || ||| |||||||| |||||||    
T  34378259 aatgtggctcagcttgggtgttggggtttgagagttttattttgaggg-tgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgttta 34378357  T
Q  174 ca 175  Q
    ||    
T  34378358 ca 34378359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 208
Target Start/End: Complemental strand, 7161935 - 7161803
Alignment:
Q  75 atgtggctcagcgtgggtgttgaagtatgggggttttatttcgaggggtgttatttggaggtgagtagtgacgatagatggttgtggatactgtgtttac 174  Q
    |||||||||||| || ||||||  || |||| ||||||||| || || |||| ||||| |||||||||||||| | | |||| ||||| |  ||||||||    
T  7161935 atgtggctcagcttgtgtgttggggtctgggagttttattttgatgg-tgttctttgggggtgagtagtgacgttgggtggtggtggaaatcgtgtttac 7161837  T
Q  175 agggtttgtttctgttaaggtgtctgtcttaggt 208  Q
    || | |||||| ||| |||| |||||| ||||||    
T  7161836 agtgcttgtttttgtgaaggagtctgttttaggt 7161803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 185
Target Start/End: Original strand, 18593404 - 18593514
Alignment:
Q  74 aatgtggctcagcgtgggtgttgaagtatgggggttttatttcgaggggtgttatttggaggtgagtagtgacgatagatggttgtggatactgtgttta 173  Q
    ||||||||||| | |||||||||  || |||| ||||||||| ||||  |||| ||||  |||||||||||||||| |  ||| |||||||| |||||||    
T  18593404 aatgtggctcaacttgggtgttggggtctgggagttttatttggagga-tgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgttta 18593502  T
Q  174 cagggtttgttt 185  Q
    ||| | ||||||    
T  18593503 cagtgcttgttt 18593514  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 20701782 - 20701716
Alignment:
Q  18 gatcggaggtcgagaggttgcagaagctgcaagttcattcggttaggagcttttcgaatgtggctca 84  Q
    |||||||||||||||||| |  ||||||| | | || ||||| ||||||||||||||||||||||||    
T  20701782 gatcggaggtcgagaggtagtggaagctgaatgatctttcggataggagcttttcgaatgtggctca 20701716  T

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Target: scaffold0050 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 36811 - 36888
Alignment:
Q  18 gatcggaggtcgagaggttgcagaagctgcaagttcattcggttaggagcttttcgaatgtggctcagcgtgggtgtt 95  Q
    ||||||||||||||| || |  |||| || | | || |||||||||||||||||||| ||||||||||| | ||||||    
T  36811 gatcggaggtcgagatgtggtggaagttgaatggtctttcggttaggagcttttcgattgtggctcagctttggtgtt 36888  T

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Target: scaffold0343 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 174
Target Start/End: Original strand, 5847 - 5966
Alignment:
Q  55 ttcggttaggagcttttcg-aatgtggctcagcgtgggtgttgaagtatgggggttttatttcgaggggtgttatttggaggtgagtagtgacgatagat 153  Q
    |||||||||| ||| |||| ||||||||||||| |||||||||   | |||| ||||||||| || ||||||| ||||  |||||||||||| ||| |      
T  5847 ttcggttaggtgctcttcgtaatgtggctcagcttgggtgttgggatctgggagttttattttga-gggtgttttttgtgggtgagtagtgatgatggga 5945  T
Q  154 ggttgtggatactgtgtttac 174  Q
    ||| ||||||||  |||||||    
T  5946 ggtggtggataccatgtttac 5966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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