View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7051_high_10 (Length: 273)

Name: NF7051_high_10
Description: NF7051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7051_high_10
NF7051_high_10
[»] chr2 (2 HSPs)
chr2 (1-135)||(30745404-30745538)
chr2 (191-263)||(30745276-30745348)
[»] chr4 (5 HSPs)
chr4 (3-135)||(19536658-19536790)
chr4 (3-126)||(7175145-7175267)
chr4 (3-130)||(15850083-15850210)
chr4 (3-121)||(19036320-19036439)
chr4 (198-259)||(15849955-15850015)
[»] chr7 (5 HSPs)
chr7 (3-135)||(9259663-9259795)
chr7 (3-135)||(9310499-9310631)
chr7 (205-264)||(9259866-9259925)
chr7 (205-264)||(9310369-9310428)
chr7 (3-75)||(11229979-11230050)
[»] chr5 (2 HSPs)
chr5 (3-135)||(23276462-23276594)
chr5 (198-264)||(23276345-23276412)
[»] chr3 (4 HSPs)
chr3 (35-135)||(30215230-30215330)
chr3 (3-95)||(30216132-30216223)
chr3 (3-126)||(22260764-22260886)
chr3 (3-126)||(22267613-22267735)
[»] scaffold0039 (1 HSPs)
scaffold0039 (3-135)||(22290-22423)
[»] scaffold0002 (1 HSPs)
scaffold0002 (49-130)||(366234-366315)
[»] chr8 (1 HSPs)
chr8 (24-109)||(1272155-1272240)
[»] chr1 (1 HSPs)
chr1 (25-99)||(3257222-3257298)


Alignment Details
Target: chr2 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 30745538 - 30745404
Alignment:
Q  1 ttaaacataacccataactaccatatcactcataatcacttaatggaaaatataaacttttcctcttaccttaaccttcaaaagcaaccttaatcttcat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  30745538 ttaaacataacccataactaccatatcactcataatcacttaatggaaaatataaactttccctcttaccttaaccttcaaaagcaaccttaatcttcac 30745439  T
Q  101 tttaatctccattttgagcttccccccaagttaga 135  Q
    |||||| ||| ||||||||||||||||||||||||    
T  30745438 tttaatatcccttttgagcttccccccaagttaga 30745404  T

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Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 191 - 263
Target Start/End: Complemental strand, 30745348 - 30745276
Alignment:
Q  191 atgtttattttgtcaaaatgaacaaatgagctcttaaccatattttcacaaagattattctcttgtatattct 263  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30745348 atgtctattttgtcaaaatgaacaaatgagctcttaaccatattttcacaaagattattctcttgtatattct 30745276  T

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Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 3 - 135
Target Start/End: Complemental strand, 19536790 - 19536658
Alignment:
Q  3 aaacataacccataactaccatatcactcataatcacttaatggaaaatataaacttttcctcttaccttaaccttcaaaagcaaccttaatcttcattt 102  Q
    ||||||||| | |||| ||  ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  19536790 aaacataactcttaaccactctatcactcataatcacttaatggtaaatataaacttttcctcttaccttaatcttcaaaagcaactttaatcttcattt 19536691  T
Q  103 taatctccattttgagcttccccccaagttaga 135  Q
    |||||||| | ||||| || |||||||| ||||    
T  19536690 taatctccctattgaggtttcccccaagctaga 19536658  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 126
Target Start/End: Complemental strand, 7175267 - 7175145
Alignment:
Q  3 aaacataacccataactaccatatcactcataatcacttaatggaaaatataaacttttcctcttaccttaaccttcaaaagcaaccttaatcttcattt 102  Q
    ||||||| || ||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||| ||| || |||||| | |||||||| | |     
T  7175267 aaacatatcctataactaccctatcattcataatcacttaatggtaaatataaacttttcctcttaccttgacc-tccaaagcagcattaatcttgagtc 7175169  T
Q  103 taatctccattttgagcttccccc 126  Q
    |||||||| | |||||||| ||||    
T  7175168 taatctccctcttgagctttcccc 7175145  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 3 - 130
Target Start/End: Complemental strand, 15850210 - 15850083
Alignment:
Q  3 aaacataacccataactaccatatcactcataatcacttaatggaaaatataaacttttcctcttaccttaaccttcaaaagcaaccttaatcttcattt 102  Q
    |||| ||||||||||||||  | ||||||||||||||||| |||  |||||| |||||||||||||| | ||| |||||||||||| |||||||| | |     
T  15850210 aaacctaacccataactactctgtcactcataatcacttagtggtgaatatacacttttcctcttacttaaactttcaaaagcaactttaatctttactc 15850111  T
Q  103 taatctccattttgagcttccccccaag 130  Q
    |||||| | | |||||||| ||||||||    
T  15850110 taatcttcgtcttgagctttcccccaag 15850083  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 121
Target Start/End: Original strand, 19036320 - 19036439
Alignment:
Q  3 aaacataacccataactaccatatcactcataatcacttaatggaaaatataaacttttcctcttaccttaacc-ttcaaaagc-aaccttaatcttcat 100  Q
    |||||| ||||||||| ||  |||||||||||||| || |||||  ||||||||| |||||||||||||||||| ||||||||| ||| ||||||||||     
T  19036320 aaacatgacccataaccactctatcactcataatctctaaatggtgaatataaac-tttcctcttaccttaacctttcaaaagctaactttaatcttcaa 19036418  T
Q  101 tttaatctccattttgagctt 121  Q
    | || ||||| | ||||||||    
T  19036419 tctactctccctcttgagctt 19036439  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 259
Target Start/End: Complemental strand, 15850015 - 15849955
Alignment:
Q  198 ttttgtcaaaatgaacaaatgagctcttaaccatattttcacaaagattattctcttgtata 259  Q
    |||| ||||||||||||||||||||||||||| || ||||||||||| ||||||||| ||||    
T  15850015 ttttctcaaaatgaacaaatgagctcttaacc-taatttcacaaagactattctcttatata 15849955  T

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Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 135
Target Start/End: Original strand, 9259663 - 9259795
Alignment:
Q  3 aaacataacccataactaccatatcactcataatcacttaatggaaaatataaacttttcctcttaccttaaccttcaaaagcaaccttaatcttcattt 102  Q
    ||||||||| |||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||  ||||||||| |     
T  9259663 aaacataactcataactactctatcactcataatcacttaatggtaaatataaacttttcctcttaccttaacctccaaaagcaactgtaatcttcactc 9259762  T
Q  103 taatctccattttgagcttccccccaagttaga 135  Q
    ||||||   | |||||||| |||||||| ||||    
T  9259763 taatctttctcttgagctttcccccaagctaga 9259795  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 135
Target Start/End: Complemental strand, 9310631 - 9310499
Alignment:
Q  3 aaacataacccataactaccatatcactcataatcacttaatggaaaatataaacttttcctcttaccttaaccttcaaaagcaaccttaatcttcattt 102  Q
    ||||||||| |||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||  ||||||||| |     
T  9310631 aaacataactcataactactctatcactcataatcacttaatggtaaatataaacttttcctcttaccttaacctccaaaagcaactgtaatcttcactc 9310532  T
Q  103 taatctccattttgagcttccccccaagttaga 135  Q
    ||||||   | |||||||| |||||||| ||||    
T  9310531 taatctttctcttgagctttcccccaagctaga 9310499  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 264
Target Start/End: Original strand, 9259866 - 9259925
Alignment:
Q  205 aaaatgaacaaatgagctcttaaccatattttcacaaagattattctcttgtatattctt 264  Q
    ||||||||||||||| ||||| | |  ||||||||||||||||||||||| |||| ||||    
T  9259866 aaaatgaacaaatgaactcttgatctaattttcacaaagattattctcttatatactctt 9259925  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 264
Target Start/End: Complemental strand, 9310428 - 9310369
Alignment:
Q  205 aaaatgaacaaatgagctcttaaccatattttcacaaagattattctcttgtatattctt 264  Q
    ||||||||||||||| ||||| | |  ||||||||||||||||||||||| |||| ||||    
T  9310428 aaaatgaacaaatgaactcttgatctaattttcacaaagattattctcttatatactctt 9310369  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 11230050 - 11229979
Alignment:
Q  3 aaacataacccataactaccatatcactcataatcacttaatggaaaatataaacttttcctcttaccttaac 75  Q
    |||||| || |||||| ||  |||||||||||||| || |||||  ||||||||| |||||||||||||||||    
T  11230050 aaacatgactcataaccactctatcactcataatctctaaatggtgaatataaac-tttcctcttaccttaac 11229979  T

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Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 135
Target Start/End: Complemental strand, 23276594 - 23276462
Alignment:
Q  3 aaacataacccataactaccatatcactcataatcacttaatggaaaatataaacttttcctcttaccttaaccttcaaaagcaaccttaatcttcattt 102  Q
    |||||| ||||||||||||  ||||||||||||||||||||||| |||||||||| |||||  ||||||||| ||||||||||||| | |||||||| |     
T  23276594 aaacatgacccataactactctatcactcataatcacttaatggtaaatataaacatttccagttaccttaatcttcaaaagcaacttaaatcttcactc 23276495  T
Q  103 taatctccattttgagcttccccccaagttaga 135  Q
    | |||||| | |||| ||| |||||||| ||||    
T  23276494 tgatctccctcttgatctttcccccaagctaga 23276462  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 264
Target Start/End: Complemental strand, 23276412 - 23276345
Alignment:
Q  198 ttttgtcaaaatgaacaaatgagctcttaaccat-attttcacaaagattattctcttgtatattctt 264  Q
    |||| ||||||||||||||||| ||||||||||| ||||||||||||| ||||||||| |||| ||||    
T  23276412 ttttctcaaaatgaacaaatgatctcttaaccataattttcacaaagactattctcttatatactctt 23276345  T

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Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 35 - 135
Target Start/End: Original strand, 30215230 - 30215330
Alignment:
Q  35 atcacttaatggaaaatataaacttttcctcttaccttaaccttcaaaagcaaccttaatcttcattttaatctccattttgagcttccccccaagttag 134  Q
    |||||||||||  ||||||||| ||||||||||||||||||||||||||||||| |||||||| | |||||||||| | || ||||| ||||||||||||    
T  30215230 atcacttaatgataaatataaatttttcctcttaccttaaccttcaaaagcaactttaatctttactttaatctccctcttaagctttcccccaagttag 30215329  T
Q  135 a 135  Q
    |    
T  30215330 a 30215330  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 30216223 - 30216132
Alignment:
Q  3 aaacataacccataactaccatatcactcataatcacttaatggaaaatataaacttttcctcttaccttaaccttcaaaagcaaccttaatc 95  Q
    |||||||||||||||||| | |  |||| ||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||| ||||||    
T  30216223 aaacataacccataactatc-tgccacttataatcacttaatggtaaatataaacttttactcttaccttaactttcaaaagcaactttaatc 30216132  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 3 - 126
Target Start/End: Original strand, 22260764 - 22260886
Alignment:
Q  3 aaacataacccataactaccatatcactcataatcacttaatggaaaatataaacttttcctcttaccttaaccttcaaaagcaaccttaatcttcattt 102  Q
    |||||| ||||||||| ||  |||||||||||||| || |||||  |||||||||||| |||||||| ||||||||||||||| | |||||||||||||     
T  22260764 aaacatgacccataaccactctatcactcataatctctaaatggtgaatataaacttt-cctcttacattaaccttcaaaagctaacttaatcttcattc 22260862  T
Q  103 taatctccattttgagcttccccc 126  Q
    || ||||| | |||||||| ||||    
T  22260863 tactctccctcttgagctttcccc 22260886  T

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Target: chr3; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 3 - 126
Target Start/End: Complemental strand, 22267735 - 22267613
Alignment:
Q  3 aaacataacccataactaccatatcactcataatcacttaatggaaaatataaacttttcctcttaccttaaccttcaaaagcaaccttaatcttcattt 102  Q
    |||||| ||||||||| ||  |||||||||||||| || |||||  |||||||||||| |||||||| ||||||||||||||| | |||||||||||||     
T  22267735 aaacatgacccataaccactctatcactcataatctctaaatggtgaatataaacttt-cctcttacattaaccttcaaaagctaacttaatcttcattc 22267637  T
Q  103 taatctccattttgagcttccccc 126  Q
    || ||||| | |||||||| ||||    
T  22267636 tactctccctcttgagctttcccc 22267613  T

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Target: scaffold0039 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 135
Target Start/End: Original strand, 22290 - 22423
Alignment:
Q  3 aaacataacccataactaccatatcactcataatcacttaatggaaaatataaacttttcctcttaccttaa-ccttcaaaagc-aaccttaatcttcat 100  Q
    |||||| ||||||||| ||  |||||||||||||| || |||||  ||||||||| |||||||||||||||| ||||||||| | ||| ||||||||||     
T  22290 aaacatgacccataaccactctatcactcataatctctaaatggtgaatataaac-tttcctcttaccttaacccttcaaaacctaactttaatcttcaa 22388  T
Q  101 tttaatctccattttgagcttccccccaagttaga 135  Q
    | || ||||| || | ||||| |||||||| ||||    
T  22389 tctactctcccttataagctttcccccaagctaga 22423  T

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Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 130
Target Start/End: Complemental strand, 366315 - 366234
Alignment:
Q  49 aatataaacttttcctcttaccttaacctt-caaaagcaaccttaatcttcattttaatctccattttgagcttccccccaag 130  Q
    |||||||||||| ||||||||||||||||| ||||||| || |||| ||||| | |||||||| | |||||||| ||||||||    
T  366315 aatataaacttt-cctcttaccttaaccttccaaaagctactttaaccttcaatctaatctccctcttgagctttcccccaag 366234  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 109
Target Start/End: Complemental strand, 1272240 - 1272155
Alignment:
Q  24 tatcactcataatcacttaatggaaaatataaacttttcctcttaccttaacc-ttcaaaagcaaccttaatcttcattttaatctc 109  Q
    |||||||||||||| || || ||  |||||||||||| ||||||||||||||| |||||||||||| | |||||||| | |||||||    
T  1272240 tatcactcataatctctaaacggtgaatataaacttt-cctcttaccttaacccttcaaaagcaacttaaatcttcactctaatctc 1272155  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 3257222 - 3257298
Alignment:
Q  25 atcactcataatcacttaatggaaaatataaacttttcctcttaccttaacctt-caaaagc-aaccttaatcttca 99  Q
    ||||||| ||||| || |||||  || ||||||||| ||||||||||||||||| ||||||| ||| ||||||||||    
T  3257222 atcactcgtaatctctaaatggtgaagataaactttccctcttaccttaaccttccaaaagctaactttaatcttca 3257298  T

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