View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7051_high_16 (Length: 243)
Name: NF7051_high_16
Description: NF7051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7051_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 22 - 201
Target Start/End: Complemental strand, 33942938 - 33942759
Alignment:
| Q |
22 |
tttgttgaattcacccaaaatgtcatctctccctgaagaactatggagcagaattctggaaatcggaattgaaaaaagcagcttgagctacaaggatctc |
121 |
Q |
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| T |
33942938 |
tttgttgaattcacccaaaatgtcatctctccctgaagaactatggagcagaattctggaaatcggaattgaaaaaagcagcttgagctacaaggatctc |
33942839 |
T |
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| Q |
122 |
tgttgcatctcaatctcttgccacctccttcaccgcctttcctctgatgactctctctggaacggccttatctcctccga |
201 |
Q |
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| T |
33942838 |
tgttgcatctcaatctcttgccacctccttcaccgcctttcctctgatgactctctctggaacggccttatctcctccga |
33942759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 38 - 201
Target Start/End: Complemental strand, 33934741 - 33934578
Alignment:
| Q |
38 |
aaaatgtcatctctccctgaagaactatggagcagaattctggaaatcggaattgaaaaaagcagcttgagctacaaggatctctgttgcatctcaatct |
137 |
Q |
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|||||||| |||||||| |||||||||| || |||||| ||||||||||| || | || | ||||||||||| || ||||| ||||||||||||| |
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| T |
33934741 |
aaaatgtcgtctctcccaatcgaactatggaccaaaattctcgaaatcggaatccaagattgcggtttgagctacaaagacctctgctgcatctcaatct |
33934642 |
T |
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| Q |
138 |
cttgccacctccttcaccgcctttcctctgatgactctctctggaacggccttatctcctccga |
201 |
Q |
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| T |
33934641 |
cctgccgcctccttcaccgcctctccgttgaagattctctctggaaccgccttctctcctccga |
33934578 |
T |
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