View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7051_high_17 (Length: 242)

Name: NF7051_high_17
Description: NF7051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7051_high_17
NF7051_high_17
[»] chr7 (4 HSPs)
chr7 (1-236)||(5178972-5179206)
chr7 (72-125)||(22845041-22845094)
chr7 (77-125)||(42233252-42233300)
chr7 (76-125)||(21068983-21069032)
[»] chr8 (8 HSPs)
chr8 (4-236)||(5185283-5185517)
chr8 (1-236)||(1795490-1795726)
chr8 (1-236)||(6231790-6232029)
chr8 (76-125)||(21112654-21112703)
chr8 (1-47)||(5198773-5198818)
chr8 (3-41)||(33861527-33861565)
chr8 (127-172)||(5058903-5058948)
chr8 (1-41)||(5195268-5195308)
[»] chr2 (10 HSPs)
chr2 (74-125)||(27510633-27510684)
chr2 (76-125)||(27193733-27193782)
chr2 (76-125)||(27843547-27843596)
chr2 (78-125)||(3643125-3643172)
chr2 (77-125)||(35610915-35610963)
chr2 (3-41)||(27194264-27194302)
chr2 (3-41)||(27844078-27844116)
chr2 (3-41)||(35611435-35611473)
chr2 (3-41)||(39441471-39441509)
chr2 (76-117)||(24267988-24268029)
[»] chr5 (9 HSPs)
chr5 (72-125)||(3691231-3691284)
chr5 (72-125)||(3875503-3875556)
chr5 (72-125)||(17870566-17870619)
chr5 (76-125)||(10026238-10026287)
chr5 (76-125)||(25541703-25541752)
chr5 (3-41)||(14191202-14191240)
chr5 (76-117)||(24628878-24628919)
chr5 (76-117)||(30345561-30345602)
chr5 (77-125)||(14191720-14191768)
[»] scaffold0356 (3 HSPs)
scaffold0356 (74-125)||(15958-16009)
scaffold0356 (74-125)||(16877-16928)
scaffold0356 (2-41)||(15437-15476)
[»] scaffold0003 (1 HSPs)
scaffold0003 (74-125)||(184068-184119)
[»] chr6 (3 HSPs)
chr6 (74-125)||(18857795-18857846)
chr6 (72-125)||(30882563-30882616)
chr6 (76-125)||(15334557-15334606)
[»] chr4 (3 HSPs)
chr4 (74-125)||(14146459-14146510)
chr4 (76-125)||(55558033-55558082)
chr4 (3-41)||(31921507-31921545)
[»] chr3 (6 HSPs)
chr3 (74-125)||(11369898-11369949)
chr3 (76-125)||(10001668-10001717)
chr3 (76-125)||(27275656-27275705)
chr3 (76-125)||(10111860-10111909)
chr3 (76-125)||(10245545-10245594)
chr3 (3-41)||(41763509-41763547)
[»] chr1 (4 HSPs)
chr1 (74-125)||(2330426-2330477)
chr1 (74-125)||(48774293-48774344)
chr1 (72-125)||(36208474-36208527)
chr1 (76-117)||(52501831-52501872)
[»] scaffold1139 (1 HSPs)
scaffold1139 (74-125)||(2274-2325)
[»] scaffold0262 (1 HSPs)
scaffold0262 (76-125)||(20264-20313)
[»] scaffold0225 (1 HSPs)
scaffold0225 (76-125)||(13204-13253)
[»] scaffold0118 (2 HSPs)
scaffold0118 (76-125)||(27629-27678)
scaffold0118 (76-125)||(24437-24486)
[»] scaffold0029 (1 HSPs)
scaffold0029 (76-125)||(141174-141222)
[»] scaffold0002 (1 HSPs)
scaffold0002 (76-125)||(318641-318689)
[»] scaffold0017 (1 HSPs)
scaffold0017 (77-125)||(187804-187852)


Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 5178972 - 5179206
Alignment:
Q  1 atagacatgtttttacttcgaagtttgatgttacctcttaaatgcatgatgccgcatttgttttgatacactatggaaaatgctgaatagtatcgtagag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5178972 atagacatgtttttacttcgaagtttgatgttacctcttaaatgcatgatgccacatttgttttgatacactatggaaaatgctgaatagtatcgtagag 5179071  T
Q  101 ttagtaactcttagtttgttctttattattggctttacttattagtcgttctttattatcttccaatgattgataactagttattatgattcacatttcg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5179072 ttagtaactcttagtttgttctttattattggctttacttattagtcgttctttattatcttccaatgattgataactacttattatgattcacatttcg 5179171  T
Q  201 catcttccaaacaaggaccttcttgctgatgtccat 236  Q
    |||||||||||||||||||||| ||||||| |||||    
T  5179172 catcttccaaacaaggaccttc-tgctgatttccat 5179206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 22845041 - 22845094
Alignment:
Q  72 tatggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 125  Q
    ||||||||||| ||||| || |||||||||||||||||||||||||||||||||    
T  22845041 tatggaaaatgttgaatggtgtcgtagagttagtaactcttagtttgttcttta 22845094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 42233252 - 42233300
Alignment:
Q  77 aaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 125  Q
    |||||| ||||| |||||||||||||||||||||||||||| |||||||    
T  42233252 aaaatgttgaatggtatcgtagagttagtaactcttagttttttcttta 42233300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 21069032 - 21068983
Alignment:
Q  76 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 125  Q
    ||||||| |||||  ||||||||||||||||||||||||||| |||||||    
T  21069032 gaaaatgttgaatgatatcgtagagttagtaactcttagttttttcttta 21068983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 4 - 236
Target Start/End: Original strand, 5185283 - 5185517
Alignment:
Q  4 gacatgtttttacttcgaagtttgatgttacctcttaaatgcatgatgccgcatttgttttgata--cactatggaaaatgctgaatagtatcgtagagt 101  Q
    |||||||||||||||| ||||||||||||||||||||||||||  ||| | ||||||||||||||  |||||||||||||||||||  ||||||||||||    
T  5185283 gacatgtttttacttcaaagtttgatgttacctcttaaatgcacaatgacacatttgttttgatatacactatggaaaatgctgaacggtatcgtagagt 5185382  T
Q  102 tagtaactcttagtttgttctttattattggctttacttattagtcgttctttattatcttccaatgattgataactagttattatgattcacatttcgc 201  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||| ||||| ||    
T  5185383 tagtaactcttagtttgttctttattattggctttacttatttgtagttctttattatcttccaatgattgataactagttattgtgattcgcattttgc 5185482  T
Q  202 atcttccaaacaaggaccttcttgctgatgtccat 236  Q
    ||||||||| ||||||||||||||||||| |||||    
T  5185483 atcttccaagcaaggaccttcttgctgatttccat 5185517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 1795726 - 1795490
Alignment:
Q  1 atagacatgtttttacttcgaagtttgatgttacctcttaaatgcatgatgccgcatttgttttgata--cactatggaaaatgctgaatagtatcgtag 98  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||| | | ||| ||||||||  ||||| |||||||| ||||  |||||||||    
T  1795726 atagacatgttttttctttgaagtttgatgttacctcttaaatgcatgatgacacctttcttttgatatacactacggaaaatgatgaacggtatcgtag 1795627  T
Q  99 agttagtaactcttagtttgttctttattattggctttacttattagtcgttctttattatcttccaatgattgataactagttattatgattcacattt 198  Q
    || |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| | |||||| |||||    
T  1795626 agatagtaactcttagtttgttctttattattggctttacttatttgtagttctttattatcttccaatgattgataactagttaatgtgattcgcattt 1795527  T
Q  199 cgcatcttccaaacaaggaccttcttgctgatgtccat 236  Q
    ||| |||||||| ||||||||||| ||||||| |||||    
T  1795526 cgcttcttccaagcaaggaccttc-tgctgatttccat 1795490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 6231790 - 6232029
Alignment:
Q  1 atagacatgtttttacttcgaagtttgatgttacctcttaaatgcatgatgccgcatttgttttgata---cactatggaaaatgctgaatagtatcgta 97  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||| | |||||||| |||||   ||||||||||||| ||||   ||||||||    
T  6231790 atagacatgtttttactttgaagtttgatattacctcttaaatgcatgatgacacatttgttatgatataacactatggaaaattctgagcggtatcgta 6231889  T
Q  98 gagttagtaactctta--gtttgttctttattattggctttacttattagtcgttctttattatcttccaatgattgataactagttattatgattcaca 195  Q
    ||||||||| ||||||  |||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| |||||| ||    
T  6231890 gagttagtagctcttatagtttgttctttattattggctttacttatttgtagttatttattatcttccaatgattgataactagttattgtgattcgca 6231989  T
Q  196 tttcgcatcttccaaacaaggaccttcttgctgatgtccat 236  Q
    ||||||||||||||| ||||||||||| ||||||| |||||    
T  6231990 tttcgcatcttccaagcaaggaccttc-tgctgatttccat 6232029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 21112703 - 21112654
Alignment:
Q  76 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 125  Q
    ||||||| ||||| ||||| |||||||||||||||||||||| |||||||    
T  21112703 gaaaatgttgaatggtatcatagagttagtaactcttagttttttcttta 21112654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 5198818 - 5198773
Alignment:
Q  1 atagacatgtttttacttcgaagtttgatgttacctcttaaatgcat 47  Q
    |||||||||||||||||| |||||||||| ||||||| |||||||||    
T  5198818 atagacatgtttttactttgaagtttgattttacctc-taaatgcat 5198773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 33861565 - 33861527
Alignment:
Q  3 agacatgtttttacttcgaagtttgatgttacctcttaa 41  Q
    |||||||||||||||| ||||||| ||||||||||||||    
T  33861565 agacatgtttttactttgaagttttatgttacctcttaa 33861527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 5058948 - 5058903
Alignment:
Q  127 tattggctttacttattagtcgttctttattatcttccaatgattg 172  Q
    |||| ||| |||||||| || |||||||||||||||||||||||||    
T  5058948 tattagctatacttatttgtagttctttattatcttccaatgattg 5058903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 5195268 - 5195308
Alignment:
Q  1 atagacatgtttttacttcgaagtttgatgttacctcttaa 41  Q
    |||||||||||||||| | |||||||||| |||||||||||    
T  5195268 atagacatgtttttacgttgaagtttgattttacctcttaa 5195308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 74 - 125
Target Start/End: Original strand, 27510633 - 27510684
Alignment:
Q  74 tggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 125  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27510633 tggaaaatgctgaatggtatcgtagagttagtaactcttagtttgttcttta 27510684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 27193733 - 27193782
Alignment:
Q  76 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 125  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27193733 gaaaatgctgaatggtatcgtagagttagtaactcttagtttgttcttta 27193782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 27843547 - 27843596
Alignment:
Q  76 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 125  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27843547 gaaaatgctgaatggtatcgtagagttagtaactcttagtttgttcttta 27843596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 3643125 - 3643172
Alignment:
Q  78 aaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 125  Q
    ||||||||||| || ||||||||||||||||||||||||||| |||||    
T  3643125 aaatgctgaatggtgtcgtagagttagtaactcttagtttgtccttta 3643172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 35610915 - 35610963
Alignment:
Q  77 aaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 125  Q
    ||||||||||||  ||||||| |||||||||||||||||||||| ||||    
T  35610915 aaaatgctgaatgctatcgtacagttagtaactcttagtttgtttttta 35610963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 27194264 - 27194302
Alignment:
Q  3 agacatgtttttacttcgaagtttgatgttacctcttaa 41  Q
    |||||||||||||||| ||||||| ||||||||||||||    
T  27194264 agacatgtttttactttgaagttttatgttacctcttaa 27194302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 27844078 - 27844116
Alignment:
Q  3 agacatgtttttacttcgaagtttgatgttacctcttaa 41  Q
    |||||||||||||||| ||||||| ||||||||||||||    
T  27844078 agacatgtttttactttgaagttttatgttacctcttaa 27844116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 35611435 - 35611473
Alignment:
Q  3 agacatgtttttacttcgaagtttgatgttacctcttaa 41  Q
    |||||||||||||||| ||||||| ||||||||||||||    
T  35611435 agacatgtttttactttgaagttttatgttacctcttaa 35611473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 39441509 - 39441471
Alignment:
Q  3 agacatgtttttacttcgaagtttgatgttacctcttaa 41  Q
    |||||||||||||||| ||||||| ||||||||||||||    
T  39441509 agacatgtttttactttgaagttttatgttacctcttaa 39441471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 117
Target Start/End: Complemental strand, 24268029 - 24267988
Alignment:
Q  76 gaaaatgctgaatagtatcgtagagttagtaactcttagttt 117  Q
    ||||||| ||||| ||||| ||||||||||||||||||||||    
T  24268029 gaaaatgttgaatggtatcatagagttagtaactcttagttt 24267988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 3691231 - 3691284
Alignment:
Q  72 tatggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 125  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  3691231 tatggaaaatgttgaatggtatcgtagagttagtaactcttagtttgttcttta 3691284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 3875556 - 3875503
Alignment:
Q  72 tatggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 125  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  3875556 tatggaaaatgttgaatggtatcgtagagttagtaactcttagtttgttcttta 3875503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 17870619 - 17870566
Alignment:
Q  72 tatggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 125  Q
    ||||||||||| ||||| || |||||||||||||||||||||||||||||||||    
T  17870619 tatggaaaatgttgaatggtgtcgtagagttagtaactcttagtttgttcttta 17870566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 10026238 - 10026287
Alignment:
Q  76 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 125  Q
    ||||||| ||||| |||||||||||||||||||||||||||| |||||||    
T  10026238 gaaaatgttgaatggtatcgtagagttagtaactcttagttttttcttta 10026287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 25541752 - 25541703
Alignment:
Q  76 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 125  Q
    ||||||| ||||| |||||||||||||||||||||||||||| |||||||    
T  25541752 gaaaatgttgaatggtatcgtagagttagtaactcttagttttttcttta 25541703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 14191240 - 14191202
Alignment:
Q  3 agacatgtttttacttcgaagtttgatgttacctcttaa 41  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  14191240 agacatgtttttacttcgaagttttatgttacctcttaa 14191202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 117
Target Start/End: Complemental strand, 24628919 - 24628878
Alignment:
Q  76 gaaaatgctgaatagtatcgtagagttagtaactcttagttt 117  Q
    ||||||| ||||| ||||||||||||||||||||||| ||||    
T  24628919 gaaaatgttgaatggtatcgtagagttagtaactcttggttt 24628878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 117
Target Start/End: Complemental strand, 30345602 - 30345561
Alignment:
Q  76 gaaaatgctgaatagtatcgtagagttagtaactcttagttt 117  Q
    ||||||| ||||| ||||||| ||||||||||||||||||||    
T  30345602 gaaaatgttgaatggtatcgttgagttagtaactcttagttt 30345561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 14191768 - 14191720
Alignment:
Q  77 aaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 125  Q
    |||||| |||||  ||||||| ||||||| |||||||||||||||||||    
T  14191768 aaaatgttgaatgctatcgtacagttagtgactcttagtttgttcttta 14191720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 125
Target Start/End: Complemental strand, 16009 - 15958
Alignment:
Q  74 tggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 125  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  16009 tggaaaatgcttaatggtatcgtagagttagtaactcttagtttgttcttta 15958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 125
Target Start/End: Complemental strand, 16928 - 16877
Alignment:
Q  74 tggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 125  Q
    ||||||||||||||| || ||||||||||||||||||||||||||| |||||    
T  16928 tggaaaatgctgaatggtgtcgtagagttagtaactcttagtttgtccttta 16877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 15476 - 15437
Alignment:
Q  2 tagacatgtttttacttcgaagtttgatgttacctcttaa 41  Q
    ||||||||||||||||| ||||||| ||||||||||||||    
T  15476 tagacatgtttttactttgaagttttatgttacctcttaa 15437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 125
Target Start/End: Original strand, 184068 - 184119
Alignment:
Q  74 tggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 125  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  184068 tggaaaatgttgaatggtatcgtagagttagtaactcttagtttgttcttta 184119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 125
Target Start/End: Original strand, 18857795 - 18857846
Alignment:
Q  74 tggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 125  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  18857795 tggaaaatgttgaatggtatcgtagagttagtaactcttagtttgttcttta 18857846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 30882563 - 30882616
Alignment:
Q  72 tatggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 125  Q
    ||||||||||| ||||| || |||||||||||||||||||||||||||||||||    
T  30882563 tatggaaaatgttgaatggtgtcgtagagttagtaactcttagtttgttcttta 30882616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 15334557 - 15334606
Alignment:
Q  76 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 125  Q
    ||||||| ||||| ||||| ||||||||||||| |||||||| |||||||    
T  15334557 gaaaatgttgaatggtatcatagagttagtaacccttagttttttcttta 15334606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 125
Target Start/End: Complemental strand, 14146510 - 14146459
Alignment:
Q  74 tggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 125  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  14146510 tggaaaatgctgaatggtatcggagagttagtaactcttagtttgttcttta 14146459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 55558082 - 55558033
Alignment:
Q  76 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 125  Q
    ||||||| ||||| |||||||||||||||||||||||||||| |||||||    
T  55558082 gaaaatgttgaatggtatcgtagagttagtaactcttagttttttcttta 55558033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 31921507 - 31921545
Alignment:
Q  3 agacatgtttttacttcgaagtttgatgttacctcttaa 41  Q
    |||||||||||||||| ||||||| ||||||||||||||    
T  31921507 agacatgtttttactttgaagttttatgttacctcttaa 31921545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 125
Target Start/End: Original strand, 11369898 - 11369949
Alignment:
Q  74 tggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 125  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  11369898 tggaaaatgctgaatggtatcgtggagttagtaactcttagtttgttcttta 11369949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 10001668 - 10001717
Alignment:
Q  76 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 125  Q
    ||||||| ||||| |||||||||||||||||||||||||||| |||||||    
T  10001668 gaaaatgttgaatggtatcgtagagttagtaactcttagttttttcttta 10001717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 27275656 - 27275705
Alignment:
Q  76 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 125  Q
    ||||||| ||||| |||||||||||||||||||||||||||| |||||||    
T  27275656 gaaaatgttgaatggtatcgtagagttagtaactcttagttttttcttta 27275705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 10111860 - 10111909
Alignment:
Q  76 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 125  Q
    ||||||| ||||| |||||||||||||| ||||||||||||| |||||||    
T  10111860 gaaaatgttgaatggtatcgtagagttattaactcttagttttttcttta 10111909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 10245545 - 10245594
Alignment:
Q  76 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 125  Q
    ||||||| ||||| |||||||||| ||||||||||||||||| |||||||    
T  10245545 gaaaatgttgaatggtatcgtagatttagtaactcttagttttttcttta 10245594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 41763547 - 41763509
Alignment:
Q  3 agacatgtttttacttcgaagtttgatgttacctcttaa 41  Q
    |||||||||||||||| ||||||| ||||||||||||||    
T  41763547 agacatgtttttactttgaagttttatgttacctcttaa 41763509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 125
Target Start/End: Original strand, 2330426 - 2330477
Alignment:
Q  74 tggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 125  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  2330426 tggaaaatgttgaatggtatcgtagagttagtaactcttagtttgttcttta 2330477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 125
Target Start/End: Complemental strand, 48774344 - 48774293
Alignment:
Q  74 tggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 125  Q
    ||||||||| | ||| ||||||||||||||||||||||||||||||||||||    
T  48774344 tggaaaatgtttaatggtatcgtagagttagtaactcttagtttgttcttta 48774293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 36208474 - 36208527
Alignment:
Q  72 tatggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 125  Q
    |||| ||||| |||||  ||||| ||||||||||||||||||||||||||||||    
T  36208474 tatgaaaaattctgaacggtatcatagagttagtaactcttagtttgttcttta 36208527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 117
Target Start/End: Original strand, 52501831 - 52501872
Alignment:
Q  76 gaaaatgctgaatagtatcgtagagttagtaactcttagttt 117  Q
    ||||||| ||||| ||||||||||||||||||||||| ||||    
T  52501831 gaaaatgttgaatggtatcgtagagttagtaactcttggttt 52501872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1139 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold1139
Description:

Target: scaffold1139; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 125
Target Start/End: Original strand, 2274 - 2325
Alignment:
Q  74 tggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 125  Q
    ||||||||| |||||  |||||||||||||||||||||||||||||||||||    
T  2274 tggaaaatgttgaatgatatcgtagagttagtaactcttagtttgttcttta 2325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 20264 - 20313
Alignment:
Q  76 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 125  Q
    ||||||| ||||| |||||||||||||||||||||||||||| |||||||    
T  20264 gaaaatgttgaatggtatcgtagagttagtaactcttagttttttcttta 20313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 13253 - 13204
Alignment:
Q  76 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 125  Q
    ||||||| ||||| |||||||||||||||||||||||||||| |||||||    
T  13253 gaaaatgttgaatggtatcgtagagttagtaactcttagttttttcttta 13204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 27678 - 27629
Alignment:
Q  76 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 125  Q
    ||||||| ||||| |||||||||||||||||||||||||||| |||||||    
T  27678 gaaaatgttgaatggtatcgtagagttagtaactcttagttttttcttta 27629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 24486 - 24437
Alignment:
Q  76 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 125  Q
    ||||||| ||||| |||| ||||||||||||||||||||||| |||||||    
T  24486 gaaaatgttgaatggtattgtagagttagtaactcttagttttttcttta 24437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 141222 - 141174
Alignment:
Q  76 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 125  Q
    ||||||| ||||| ||||||||||||||||||||||||| ||||||||||    
T  141222 gaaaatgttgaatggtatcgtagagttagtaactcttag-ttgttcttta 141174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 318689 - 318641
Alignment:
Q  76 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 125  Q
    ||||||| ||||| ||||||||||||||||||||||||| ||||||||||    
T  318689 gaaaatgttgaatggtatcgtagagttagtaactcttag-ttgttcttta 318641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 187804 - 187852
Alignment:
Q  77 aaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 125  Q
    |||||| ||||| ||||||||||||||| |||||||||||| |||||||    
T  187804 aaaatgttgaatggtatcgtagagttagcaactcttagttttttcttta 187852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University