View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7051_high_2 (Length: 681)
Name: NF7051_high_2
Description: NF7051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7051_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 189 - 655
Target Start/End: Original strand, 28152251 - 28152726
Alignment:
| Q |
189 |
taatatgcactaatttatagttataggtagttatgaataaaatcaaacgcttttgaattgtgcagcttggttacaagtgagtaatggaaatgttcctgta |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28152251 |
taatatgcactaatttatagttataggtagttatgaataaaatcaaacgcttttgaattgtgcagcttggttacaagtgagtaatggaaatgttcctgta |
28152350 |
T |
|
| Q |
289 |
acagcagtagtcaaaacaaatgaaggatttaaattttgtggtgtcatttttgctgaatctaattgttggtctatgcttaagggtggtttcatagcagata |
388 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28152351 |
acagcagtagttaaaacaaatgaaggatttaaattttgtggtgtcatttttgcggaatctaactgttggtctatgcttaagggtggtttcatagcagata |
28152450 |
T |
|
| Q |
389 |
catcaggggaagctgagctctactttga-------------ggttcttcataattgtatttttgtactattattcgaatgataaataaggatattatatt |
475 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28152451 |
catcaggggaagctgagctctactttgaggtacttaagtatggttcttcataattgtatttttgtactattattcgaatgataaataaggatattatatt |
28152550 |
T |
|
| Q |
476 |
cattaattactgattaattctccaaattttaatacatctgtaaaatgttgtatcatgtagagtaataatacttatgtggaaatttggatagacagtgtat |
575 |
Q |
| |
|
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28152551 |
c----attactgattaattctccaaattataatacatctgtaaaatgttgtatcatgtagagtaataatacttatgtggaaatttggatagacagtgtat |
28152646 |
T |
|
| Q |
576 |
ccttacaaccattcacagaacaacaatggaagtcgcatcaagatcaaagcattgaaaaggtaaacaactaactattcata |
655 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28152647 |
ccttacaaccattcacagaacaacaatggaagtcgcatcaagatcaaagcattgaaaaggtaaacaactaactattcata |
28152726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 28151803 - 28151991
Alignment:
| Q |
1 |
tcatttggggaagcaaaaatacagcatagagaatcattaggtaacaaatatgtggtagctcatagcagaaatcaaccatatgatagtgtctcccaaaaga |
100 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28151803 |
tcatttggggaatcaaaaatacaacatagagaatcattaggtaacaaatatgtggtagctcatagcagaaatcaaccatatgatagtgtctcccaaaaga |
28151902 |
T |
|
| Q |
101 |
ttcaccttcaaaaggggatgtattatactttatctggtgagatttattgtcataaattaaagtttaactttgatatattgtaaacaaat |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28151903 |
ttcaccttcaaaaggggatgtattatactttatctggtgagatttattgtcataaattaaagtttaactttgatatattgtaaacaaat |
28151991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 1e-43; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 244 - 426
Target Start/End: Complemental strand, 8024359 - 8024177
Alignment:
| Q |
244 |
aattgtgcagcttggttacaagtgagtaatggaaatgttcctgtaacagcagtagtcaaaacaaatgaaggatttaaattttgtggtgtcatttttgctg |
343 |
Q |
| |
|
|||| |||||||||| ||||||||||| | | || ||||||||| ||||||||||||||||||| |||||||||||||| |||||| |||||||||| |
|
|
| T |
8024359 |
aattatgcagcttggatacaagtgagtgaggaaactgttcctgtcacagcagtagtcaaaacaaccaaaggatttaaatttggtggtgctatttttgctg |
8024260 |
T |
|
| Q |
344 |
aatctaattgttggtctatgcttaagggtggtttcatagcagatacatcaggggaagctgagctctactttgaggttcttcat |
426 |
Q |
| |
|
| ||||||||||||| ||||||||||||||| | |||||||||||| |||| | |||||||||||| |||||||| |||||| |
|
|
| T |
8024259 |
agcctaattgttggtccatgcttaagggtggtcttatagcagatacaacaggagtagctgagctctattttgaggtacttcat |
8024177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 2 - 107
Target Start/End: Complemental strand, 8024953 - 8024848
Alignment:
| Q |
2 |
catttggggaagcaaaaatacagcatagagaatcattaggtaacaaatatgtggtagctcatagcagaaatcaaccatatgatagtgtctcccaaaagat |
101 |
Q |
| |
|
|||||||||| |||| ||| | |||||| |||||||||| ||||||| ||||||| | ||||| |||||||||||| ||||||||||||| |||||||| |
|
|
| T |
8024953 |
catttggggatgcaataattgaacatagaaaatcattaggcaacaaatttgtggtaacacatagtagaaatcaaccacatgatagtgtctcacaaaagat |
8024854 |
T |
|
| Q |
102 |
tcacct |
107 |
Q |
| |
|
| |||| |
|
|
| T |
8024853 |
ttacct |
8024848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 531 - 641
Target Start/End: Complemental strand, 8024100 - 8023990
Alignment:
| Q |
531 |
tgtagagtaataatacttatgtggaaatttggatagacagtgtatccttacaaccattcacagaacaacaatggaagtcgcatcaagatcaaagcattga |
630 |
Q |
| |
|
||||||| |||||||||| ||| ||||||||| | |||| |||||||| ||||||||||||||| | ||||||| || |||||||| | ||| ||||| |
|
|
| T |
8024100 |
tgtagagcaataatacttctgtcgaaatttgggtcgacaacgtatccttgcaaccattcacagaaaagcaatggagatctcatcaagaactaagtattga |
8024001 |
T |
|
| Q |
631 |
aaaggtaaaca |
641 |
Q |
| |
|
|||||| |||| |
|
|
| T |
8024000 |
aaaggtgaaca |
8023990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 244 - 419
Target Start/End: Complemental strand, 21544771 - 21544596
Alignment:
| Q |
244 |
aattgtgcagcttggttacaagtgagtaatggaaatgttcctgtaacagcagtagtcaaaacaaatgaaggatttaaattttgtggtgtcatttttgctg |
343 |
Q |
| |
|
|||| |||||||||| ||||||||||| | | ||||| | ||||||||| | |||||||||| |||||||||||||||| |||||| ||||| ||||| |
|
|
| T |
21544771 |
aattatgcagcttggatacaagtgagtgaggcgaatgtcctggtaacagcaatggtcaaaacaactgaaggatttaaatttggtggtgccatttatgctg |
21544672 |
T |
|
| Q |
344 |
aatctaattgttggtctatgcttaagggtggtttcatagcagatacatcaggggaagctgagctctactttgaggt |
419 |
Q |
| |
|
| | ||||||||||||||||||||||||||| ||| ||| || || ||| | |||||||||||| |||||||| |
|
|
| T |
21544671 |
agccgaattgttggtctatgcttaagggtggtctcacagcggacgcaacagaagtagctgagctctattttgaggt |
21544596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 21546091 - 21546003
Alignment:
| Q |
2 |
catttggggaagcaaaaatacagcatagagaatcattaggtaacaaatatgtggtagctcatagcagaaatcaaccatatgatagtgtc |
90 |
Q |
| |
|
|||||||| | |||| |||| | |||||||||||||| |||||||||||||||||||| ||| ||||||||||||| ||||||||||| |
|
|
| T |
21546091 |
catttgggaatgcaagaatagaacatagagaatcattgggtaacaaatatgtggtagccaataacagaaatcaaccacatgatagtgtc |
21546003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 531 - 641
Target Start/End: Complemental strand, 21544476 - 21544366
Alignment:
| Q |
531 |
tgtagagtaataatacttatgtggaaatttggatagacagtgtatccttacaaccattcacagaacaacaatggaagtcgcatcaagatcaaagcattga |
630 |
Q |
| |
|
||||||| |||||||||| ||| ||||||||||| |||| | ||||| ||||| |||||| || ||||||||| ||| |||||||| |||| ||||| |
|
|
| T |
21544476 |
tgtagagcaataatacttctgttgaaatttggatcgacaacatttccttgcaacctttcacaaaaaaacaatggacgtctcatcaagaacaaaatattga |
21544377 |
T |
|
| Q |
631 |
aaaggtaaaca |
641 |
Q |
| |
|
||||||||||| |
|
|
| T |
21544376 |
aaaggtaaaca |
21544366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University