View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7051_low_11 (Length: 308)
Name: NF7051_low_11
Description: NF7051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7051_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 14 - 295
Target Start/End: Complemental strand, 37462466 - 37462185
Alignment:
| Q |
14 |
atcatgtgccacacacaacgccatgcatctcgcgaaaaaacaggagccataatctcgacaaatgctgcacaaggaggaagaagagggtatttacacttcc |
113 |
Q |
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| T |
37462466 |
atcatgtgccacacacaacgccatgcatctcgcgaaaaaacaggagccataatctcgacaaatgctgcacaaggaggaagaagagggtatttacacttcc |
37462367 |
T |
|
| Q |
114 |
ctggtttctcttgtgtttgtctaatagaaaaaccaaacaaataaacagtcaaaaacacataaactcattctttcacaatcataacacacaccacaagaaa |
213 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37462366 |
ctggtttctcttgtgcttgtctaatagaaaaaccaaacaaataaacagtcaaaaaaacataaactcattctttcacaatcataacacacaccacaagaaa |
37462267 |
T |
|
| Q |
214 |
attgtgacttatcattagttcttacttgtgcacttcactatcatttcttctcttagtcatattccatatcaaccctttttga |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
37462266 |
attgtgacttatcattagttcttacttgtgcacttcactatcatttcttctcttcgtcatattccatatcaaccctttttga |
37462185 |
T |
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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 39263188 - 39263127
Alignment:
| Q |
14 |
atcatgtgccacacacaacgccatgcatctcgcgaaaaaacaggagccataatctcgacaaa |
75 |
Q |
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||||| |||||||||||||||||||| |||||||| || || |||||||||||||| ||||| |
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| T |
39263188 |
atcatatgccacacacaacgccatgcttctcgcgagaatactggagccataatctcaacaaa |
39263127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 11893371 - 11893309
Alignment:
| Q |
14 |
atcatgtgccacacacaacgccatgcatctcgcgaaaaaacaggagccataatctcgacaaat |
76 |
Q |
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||||| ||||||||||||||||||| ||||| ||||| ||||||||||| ||||| |||||| |
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| T |
11893371 |
atcatatgccacacacaacgccatgaatctctggaaaatacaggagccatgatctcaacaaat |
11893309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 40419277 - 40419333
Alignment:
| Q |
20 |
tgccacacacaacgccatgcatctcgcgaaaaaacaggagccataatctcgacaaat |
76 |
Q |
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|||||||||||||||||||| || || |||||| |||| |||||||| || |||||| |
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| T |
40419277 |
tgccacacacaacgccatgcttcccgagaaaaagcaggggccataatttccacaaat |
40419333 |
T |
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