View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7051_low_12 (Length: 291)

Name: NF7051_low_12
Description: NF7051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7051_low_12
NF7051_low_12
[»] chr8 (7 HSPs)
chr8 (16-274)||(37201855-37202113)
chr8 (152-238)||(37217026-37217111)
chr8 (16-92)||(37216869-37216945)
chr8 (33-92)||(37211281-37211340)
chr8 (208-274)||(37211417-37211484)
chr8 (154-214)||(37183009-37183068)
chr8 (154-214)||(37194141-37194200)
[»] chr2 (2 HSPs)
chr2 (148-252)||(7527133-7527236)
chr2 (148-274)||(414773-414899)


Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 16 - 274
Target Start/End: Original strand, 37201855 - 37202113
Alignment:
Q  16 atggtgagtagaatctgtttttgttatactttatcagcccaacaaagcataacaacacagctacttctagaacctcactagtgttctgaagaaacttaaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  37201855 atggtgagtagaatctgtttttgttatactttatcagcccaacaaagcataacaacacagctacttctagaacctcactagtgttctgaagaaactttaa 37201954  T
Q  116 ttttccctcacaccatagagaaagaatggatttcctataacatgatggttaatttattttaaaataaatatagcactcatctcatgcaaacatttttaat 215  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37201955 ttttccctcacaccatagagaaagaatgggtttcctataacatgatggttaatttattttaaaataaatatagcactcatctcatgcaaacatttttaat 37202054  T
Q  216 gatcaaccaggtcatcaaataaacaaatctataaggccattcatatggaaattcaaatc 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37202055 gatcaaccaggtcatcaaataaacaaatctataaggccattcatatggaaattcaaatc 37202113  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 37217026 - 37217111
Alignment:
Q  152 ataacatgatggttaatttattttaaaataaatatagcactcatctcatgcaaacatttttaatgatcaaccaggtcatcaaataaa 238  Q
    ||||||||||||| ||||| |||| ||| ||||||| ||||||||||||||| ||||||||| ||||||| ||||||| ||||||||    
T  37217026 ataacatgatggtaaatttgtttttaaa-aaatataccactcatctcatgcagacatttttagtgatcaatcaggtcaccaaataaa 37217111  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 37216869 - 37216945
Alignment:
Q  16 atggtgagtagaatctgtttttgttatactttatcagcccaacaaagcataacaacacagctacttctagaacctca 92  Q
    ||||||| ||| ||||||||||  || |||||||||||| |||||||||||| |||||| ||||||| |||||||||    
T  37216869 atggtgattagtatctgtttttcctagactttatcagccaaacaaagcataaaaacacaactacttcaagaacctca 37216945  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 37211281 - 37211340
Alignment:
Q  33 tttttgttatactttatcagcccaacaaagcataacaacacagctacttctagaacctca 92  Q
    ||||| ||| ||||||| |||||||||||||||||||||||| ||||||| |||||||||    
T  37211281 tttttcttagactttattagcccaacaaagcataacaacacaactacttcaagaacctca 37211340  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 274
Target Start/End: Original strand, 37211417 - 37211484
Alignment:
Q  208 tttttaatgatcaaccaggtcatcaaataaacaaatctataaggc-cattcatatggaaattcaaatc 274  Q
    |||| ||||||||| ||||| | ||||||| |||||||||||||| ||||||||||||||||||||||    
T  37211417 ttttaaatgatcaatcaggttaacaaataagcaaatctataaggcacattcatatggaaattcaaatc 37211484  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 37183009 - 37183068
Alignment:
Q  154 aacatgatggttaatttattttaaaataaatatagcactcatctcatgcaaacatttttaa 214  Q
    |||||||| |||||||| ||||||| |||||||| |||| ||||||||||| |||||||||    
T  37183009 aacatgattgttaatttgttttaaa-taaatataccacttatctcatgcaagcatttttaa 37183068  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 37194141 - 37194200
Alignment:
Q  154 aacatgatggttaatttattttaaaataaatatagcactcatctcatgcaaacatttttaa 214  Q
    |||||||| |||||||| ||||||| |||||||| |||| ||||||||||| |||||||||    
T  37194141 aacatgattgttaatttgttttaaa-taaatataccacttatctcatgcaagcatttttaa 37194200  T

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Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 148 - 252
Target Start/End: Original strand, 7527133 - 7527236
Alignment:
Q  148 tcctataacatgatggttaatttattttaaaataaatatagcactcatctcatgcaaacatttttaatgatcaaccaggtcatcaaataaacaaatctat 247  Q
    ||||||||||| ||||||||||| ||||||| |||||||| ||| || |||||||||||||| ||||||||||| ||||||| ||||||| ||||| |||    
T  7527133 tcctataacatcatggttaatttgttttaaa-taaatataccacacacctcatgcaaacattattaatgatcaatcaggtcagcaaataagcaaatttat 7527231  T
Q  248 aaggc 252  Q
    |||||    
T  7527232 aaggc 7527236  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 148 - 274
Target Start/End: Complemental strand, 414899 - 414773
Alignment:
Q  148 tcctataacatgatggttaatttattttaaaataaatatagcactcatctcatgcaaacatttttaatgatcaacca-ggtcatcaaataaacaaatcta 246  Q
    ||||||||||  ||||||||||| |||  ||||||||||| || |||||||||||||||||||||||||||||| || |  |||||  ||| ||||| ||    
T  414899 tcctataacacaatggttaatttgttt--aaataaatataccaatcatctcatgcaaacatttttaatgatcaatcatgcccatcatttaagcaaatgta 414802  T
Q  247 taaggc-cattcatatggaaattcaaatc 274  Q
    |||||| |||||||||| | |||||||||    
T  414801 taaggcacattcatatgaagattcaaatc 414773  T

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