View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7051_low_16 (Length: 250)
Name: NF7051_low_16
Description: NF7051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7051_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 6265731 - 6265489
Alignment:
| Q |
1 |
taaaagaggcaattaacaatttgccaacattgggagataaacaaacagctttcagcattgaatttgaatatgatagcaactttggaattcctggagcatt |
100 |
Q |
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| T |
6265731 |
taaaagaggcaattaacaatttgccaacattgggagataaacaaacagctttcagcattgaatttgaatatgatagcaactttggaattcctggagcatt |
6265632 |
T |
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| Q |
101 |
caaaattaagaactttatgtcaactgagttcctccttgtgagtttgactcttgaggatatcccaaacgttggaaccattcactttgtttgcaactcgtgg |
200 |
Q |
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| T |
6265631 |
caaaattaagaactttatgtcaactgagttcctccttgtgagtttgactcttgatgatatcccaaacgttggaaccattcactttgtttgcaactcgtgg |
6265532 |
T |
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| Q |
201 |
gtttacaatgcgaaaaactacctaactgatcgtatattcttcg |
243 |
Q |
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| T |
6265531 |
gtttacaatgcgaaaaactacctaactgatcgtattttcttcg |
6265489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 84 - 210
Target Start/End: Complemental strand, 6425677 - 6425551
Alignment:
| Q |
84 |
ggaattcctggagcattcaaaattaagaactttatgtcaac-tgagttcctccttgtgagtttgactcttgaggatatcccaaacgttggaaccattcac |
182 |
Q |
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| T |
6425677 |
ggaattccaggagcattctatattgagaattttttg-caacatgagttcttccttgtgagtttgacacttgaagatgttccaaaccatggaaccatcaac |
6425579 |
T |
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| Q |
183 |
tttgtttgcaactcgtgggtttacaatg |
210 |
Q |
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| T |
6425578 |
tttgtttgcaactcttgggtttacaatg |
6425551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 217
Target Start/End: Complemental strand, 6364838 - 6364754
Alignment:
| Q |
133 |
tccttgtgagtttgactcttgaggatatcccaaacgttggaaccattcactttgtttgcaactcgtgggtttacaatgcgaaaaa |
217 |
Q |
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| T |
6364838 |
tccttgtcagcttgactcttgaagatgttccaaaccatggaaccatcaactttgtttgcaactcatgggtttacaacgctaaaaa |
6364754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 6364953 - 6364905
Alignment:
| Q |
21 |
ttgccaacattgggagataaacaaacagctttcagcattgaatttgaat |
69 |
Q |
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| T |
6364953 |
ttgccaacattgggagataaacaaaatgctttcagtattgaatttgaat |
6364905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 209
Target Start/End: Complemental strand, 6354192 - 6354007
Alignment:
| Q |
24 |
ccaacattgggagataaacaaacagctttcagcattgaatttgaatatgatagcaactttggaattcctggagcattcaaaattaagaactttatgtcaa |
123 |
Q |
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| T |
6354192 |
ccaacattgggagacaaacaaaatgctttcagtattcattttgaatgggacagtaacatgggaattcccggagctttttacatcgataattttatgcaag |
6354093 |
T |
|
| Q |
124 |
ctgagttcctccttgtgagtttgactcttgaggatatcccaaacgttggaaccattcactttgtttgcaactcgtgggtttacaat |
209 |
Q |
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||| ||| |||||||||||||||| ||||| ||| | |||||| |||| |||| |||||||| |||||||| ||| |||||||| |
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| T |
6354092 |
gtgaattcttccttgtgagtttgacacttgaagatgttccaaaccatggatccatccactttgtctgcaactcatggatttacaat |
6354007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 217
Target Start/End: Complemental strand, 6333525 - 6333441
Alignment:
| Q |
133 |
tccttgtgagtttgactcttgaggatatcccaaacgttggaaccattcactttgtttgcaactcgtgggtttacaatgcgaaaaa |
217 |
Q |
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| T |
6333525 |
tccttgtaagtttgacgcttgaagatattcccatccatggaaccatcaactttgtttgcaactcatggatttacaatgctaaaaa |
6333441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 209
Target Start/End: Complemental strand, 7461093 - 7461017
Alignment:
| Q |
133 |
tccttgtgagtttgactcttgaggatatcccaaacgttggaaccattcactttgtttgcaactcgtgggtttacaat |
209 |
Q |
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| T |
7461093 |
tccttgtgagtttgacacttgaagatgttccaaaccatggaaccatcaactttgtttgcaactcatggattcacaat |
7461017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 221
Target Start/End: Complemental strand, 6290846 - 6290760
Alignment:
| Q |
135 |
cttgtgagtttgactcttgaggatatcccaaacgttggaaccattcactttgtttgcaactcgtgggtttacaatgcgaaaaactac |
221 |
Q |
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| T |
6290846 |
cttgtaagtttgacccttgaagatgttcccaaccatggaaccatcaactttgtttgcaactcatggatttacaatgctcaaaactac |
6290760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 84 - 211
Target Start/End: Complemental strand, 42694864 - 42694737
Alignment:
| Q |
84 |
ggaattcctggagcattcaaaattaagaactttatgtcaactgagttcctccttgtgagtttgactcttgaggatatcccaaacgttggaaccattcact |
183 |
Q |
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| T |
42694864 |
ggaattcctggagcattttacatcaagaactttatgcaaactgagtttttccttgtgagtttgactcttgaagacattccaaatcatggaagcatctact |
42694765 |
T |
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| Q |
184 |
ttgtttgcaactcgtgggtttacaatgc |
211 |
Q |
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|||| |||||||| ||| |||| ||||| |
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| T |
42694764 |
ttgtatgcaactcctggatttataatgc |
42694737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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