View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7051_low_23 (Length: 241)

Name: NF7051_low_23
Description: NF7051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7051_low_23
NF7051_low_23
[»] chr7 (3 HSPs)
chr7 (1-222)||(5178722-5178942)
chr7 (57-168)||(8306715-8306825)
chr7 (57-155)||(8551768-8551865)
[»] chr8 (8 HSPs)
chr8 (1-209)||(5177601-5177808)
chr8 (3-204)||(5185048-5185248)
chr8 (1-209)||(5195037-5195244)
chr8 (1-209)||(6231553-6231760)
chr8 (1-196)||(5198842-5199036)
chr8 (23-209)||(1795781-1795966)
chr8 (10-197)||(5207047-5207233)
chr8 (35-156)||(5171556-5171676)
[»] chr4 (2 HSPs)
chr4 (69-146)||(10203355-10203432)
chr4 (51-146)||(49611874-49611969)
[»] chr6 (5 HSPs)
chr6 (42-132)||(1187189-1187279)
chr6 (69-130)||(1192897-1192958)
chr6 (69-130)||(896776-896837)
chr6 (51-155)||(1197400-1197503)
chr6 (69-128)||(1181971-1182030)


Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 5178942 - 5178722
Alignment:
Q  1 attctaacataaagctaaatttttctccaattggcaacaattctagaatggtcttgaaatcaatattatcatcaatcttcattgagcttatgactttcac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5178942 attctaacataaagctaaatttttctccaattggcaacaattctagaatggtcttgaaatcaatattatcatcaatcttcattgagcttatgactttcac 5178843  T
Q  101 attcttcaagccatgccaccaacacttagtatcactagaactgcaacaagcagtcatccccttttctttcaattagcatctcatataagaactgcagatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  5178842 attcttcaagccatgccaccaacacttagtatcactagaactgc-acaagcagtcatccccctttctttcaattagcgtctcatataagaactgcagatt 5178744  T
Q  201 cagacgattgagaatagagtta 222  Q
    ||||||||| ||||||||||||    
T  5178743 cagacgattaagaatagagtta 5178722  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 57 - 168
Target Start/End: Complemental strand, 8306825 - 8306715
Alignment:
Q  57 aaatcaatattatcatcaatcttcattgagcttatgactttcacattcttcaagccatgccaccaacacttagtatcactagaactgcaacaagcagtca 156  Q
    ||||||| ||| |||||||| |||||||||| | ||||||||| || |||||||||||||||||||||||| |||||| |||| |||||| ||||||||     
T  8306825 aaatcaacattctcatcaattttcattgagcgtgtgactttcaaatccttcaagccatgccaccaacactttgtatcattagagctgcaa-aagcagtcg 8306727  T
Q  157 tccccttttctt 168  Q
    ||  ||||||||    
T  8306726 tcgtcttttctt 8306715  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 57 - 155
Target Start/End: Original strand, 8551768 - 8551865
Alignment:
Q  57 aaatcaatattatcatcaatcttcattgagcttatgactttcacattcttcaagccatgccaccaacacttagtatcactagaactgcaacaagcagtc 155  Q
    ||||||| ||| |||||||| |||||||||  |  |||||||| |||||||||||||||||||||||| || ||||||||||| |||||| ||||||||    
T  8551768 aaatcaacattctcatcaattttcattgagtgtgcgactttcaaattcttcaagccatgccaccaacaattggtatcactagagctgcaa-aagcagtc 8551865  T

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Target: chr8 (Bit Score: 161; Significance: 5e-86; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 5177808 - 5177601
Alignment:
Q  1 attctaacataaagctaaatttttctccaattggcaacaattctagaatggtcttgaaatcaatattatcatcaatcttcattgagcttatgactttcac 100  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  5177808 attctaacataaaactaattttttctccaattggcaacaattctagcatggtcttgaagtcaatattatcatcaatcttcactgagcttatgactttcac 5177709  T
Q  101 attcttcaagccatgccaccaacacttagtatcactagaactgcaacaagcagtcatccccttttctttcaattagcatctcatataagaactgcagatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||| |||||||||| |||||||||||    
T  5177708 attcttcaagccatgccaccaacacttagtatcactagaactgc-acaagcagtcatccccctttctttccattagcgtctcatataaaaactgcagatt 5177610  T
Q  201 cagacgatt 209  Q
    |||| ||||    
T  5177609 cagatgatt 5177601  T

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Target: chr8; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 3 - 204
Target Start/End: Complemental strand, 5185248 - 5185048
Alignment:
Q  3 tctaacataaagctaaatttttctccaattggcaacaattctagaatggtcttgaaatcaatattatcatcaatcttcattgagcttatgactttcacat 102  Q
    ||||||| |||||||| || |||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5185248 tctaacacaaagctaatttcttcttcaattggcaacaattctagcatggtcttgaagtcaatattatcatcaatcttcattgagcttatgactttcacat 5185149  T
Q  103 tcttcaagccatgccaccaacacttagtatcactagaactgcaacaagcagtcatccccttttctttcaattagcatctcatataagaactgcagattca 202  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||| |||||||||| |||||||||||||    
T  5185148 tcttcaagccatgccaccaacacttagtatcactagaactgc-acaagcagtcatccccctttctttccattagcgtctcatataaaaactgcagattca 5185050  T
Q  203 ga 204  Q
    ||    
T  5185049 ga 5185048  T

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Target: chr8; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 5195244 - 5195037
Alignment:
Q  1 attctaacataaagctaaatttttctccaattggcaacaattctagaatggtcttgaaatcaatattatcatcaatcttcattgagcttatgactttcac 100  Q
    |||||||||||||| ||| ||||||  || ||||||||| |||||| |||||||||||||||||||| |||||||||||||  |||||||||||||||||    
T  5195244 attctaacataaagttaattttttcatcagttggcaacagttctagcatggtcttgaaatcaatattctcatcaatcttcaccgagcttatgactttcac 5195145  T
Q  101 attcttcaagccatgccaccaacacttagtatcactagaactgcaacaagcagtcatccccttttctttcaattagcatctcatataagaactgcagatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||| ||||||||||||||||||||||    
T  5195144 attcttcaagccatgccaccaacacttagtatcactagaactgcaa-aagcagtcatccccctttctttccattagcgtctcatataagaactgcagatt 5195046  T
Q  201 cagacgatt 209  Q
    |||| ||||    
T  5195045 cagatgatt 5195037  T

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Target: chr8; HSP #4
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 6231760 - 6231553
Alignment:
Q  1 attctaacataaagctaaatttttctccaattggcaacaattctagaatggtcttgaaatcaatattatcatcaatcttcattgagcttatgactttcac 100  Q
    |||||||||||||||||| |||| ||||| |||||||||||||||| |||||||||||||||||||| | |||| |||||| ||||||||||||||||||    
T  6231760 attctaacataaagctaatttttcctccatttggcaacaattctagcatggtcttgaaatcaatattcttatcattcttcaatgagcttatgactttcac 6231661  T
Q  101 attcttcaagccatgccaccaacacttagtatcactagaactgcaacaagcagtcatccccttttctttcaattagcatctcatataagaactgcagatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||| ||||| ||||||| |||    
T  6231660 attcttcaagccatgccaccaacacttagtatcactagaactgcaa-aagcagtcatccccttttctttccattagcttctcgtataaaaactgcatatt 6231562  T
Q  201 cagacgatt 209  Q
     ||| ||||    
T  6231561 tagatgatt 6231553  T

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Target: chr8; HSP #5
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 5198842 - 5199036
Alignment:
Q  1 attctaacataaagctaaatttttctccaattggcaacaattctagaatggtcttgaaatcaatattatcatcaatcttcattgagcttatgactttcac 100  Q
    |||||||||||||| ||| ||||||  || ||||||||| |||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  5198842 attctaacataaagttaattttttcatcagttggcaacagttctagcatggtcttgaaatcaatattatcatcaatcttcaccgagcttatgactttcac 5198941  T
Q  101 attcttcaagccatgccaccaacacttagtatcactagaactgcaacaagcagtcatccccttttctttcaattagcatctcatataagaactgca 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||| |||||||||| |||||||    
T  5198942 attcttcaagccatgccaccaacacttagtatcactagaactgcaa-aagcagtcatccccctttctttccattagcgtctcatataaaaactgca 5199036  T

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Target: chr8; HSP #6
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 23 - 209
Target Start/End: Original strand, 1795781 - 1795966
Alignment:
Q  23 ttctccaattggcaacaattctagaatggtcttgaaatcaatattatcatcaatcttcattgagcttatgactttcacattcttcaagccatgccaccaa 122  Q
    ||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  1795781 ttctccatttggcaacaattctagcatggtcttgaaatcaatattctcatcaatcttcaccgagcttatgactttcacattcttcaagccatgccaccaa 1795880  T
Q  123 cacttagtatcactagaactgcaacaagcagtcatccccttttctttcaattagcatctcatataagaactgcagattcagacgatt 209  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||| | ||||||||| ||| ||||    
T  1795881 cacttagtatcactagaactgc-acaagcagtcatccccttttctttccattagcgtctcatataaaagctgcagattgagatgatt 1795966  T

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Target: chr8; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 10 - 197
Target Start/End: Complemental strand, 5207233 - 5207047
Alignment:
Q  10 taaagctaaatttttctccaattggcaacaattctagaatggtcttgaaatcaatattatcatcaatcttcattgagcttatgactttcacattcttcaa 109  Q
    ||||||||| || |||||||| |  |||||||||||  |||||||||||||||| ||| |||||||||||||| |||||  ||||||| |||| ||||||    
T  5207233 taaagctaatttcttctccaaatcccaacaattctaacatggtcttgaaatcaacattctcatcaatcttcatagagctcgtgacttttacatccttcaa 5207134  T
Q  110 gccatgccaccaacacttagtatcactagaactgcaacaagcagtcatccccttttctttcaattagcatctcatataagaactgcag 197  Q
    |||||||||||||||| |||||||||  |||| |||| || ||| ||||| | |||||||| |||||| |||||||||  ||||||||    
T  5207133 gccatgccaccaacacctagtatcaccggaaccgcaa-aaacagccatcctcctttctttccattagcgtctcatatagaaactgcag 5207047  T

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Target: chr8; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 35 - 156
Target Start/End: Complemental strand, 5171676 - 5171556
Alignment:
Q  35 caacaattctagaatggtcttgaaatcaatattatcatcaatcttcattgagcttatgactttcacattcttcaagccatgccaccaacacttagtatca 134  Q
    |||| |||||| || || ||| ||||||| ||| || ||||||||||| |||||| | |||||||||| |||||||||||||||||||||||| ||||||    
T  5171676 caaccattctaaaaaggacttcaaatcaacattctcgtcaatcttcatagagcttgtaactttcacatccttcaagccatgccaccaacacttggtatca 5171577  T
Q  135 ctagaactgcaacaagcagtca 156  Q
    | |||| ||||| |||||||||    
T  5171576 caagaaatgcaa-aagcagtca 5171556  T

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Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 10203432 - 10203355
Alignment:
Q  69 tcatcaatcttcattgagcttatgactttcacattcttcaagccatgccaccaacacttagtatcactagaactgcaa 146  Q
    |||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||| |||||    
T  10203432 tcatcaatcttcttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagtagaaatgcaa 10203355  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 51 - 146
Target Start/End: Complemental strand, 49611969 - 49611874
Alignment:
Q  51 gtcttgaaatcaatattatcatcaatcttcattgagcttatgactttcacattcttcaagccatgccaccaacacttagtatcactagaactgcaa 146  Q
    ||||| ||||||| ||| |||||||| ||| ||||  ||  |||||||| || |||||||||||||||||||||||| ||||||||||||| ||||    
T  49611969 gtcttaaaatcaacattctcatcaattttctttgaagttgagactttcaaatccttcaagccatgccaccaacacttggtatcactagaaccgcaa 49611874  T

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Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 42 - 132
Target Start/End: Complemental strand, 1187279 - 1187189
Alignment:
Q  42 tctagaatggtcttgaaatcaatattatcatcaatcttcattgagcttatgactttcacattcttcaagccatgccaccaacacttagtat 132  Q
    |||| ||||||||| |||  || ||| |||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||| ||||    
T  1187279 tctaaaatggtcttaaaacaaacattctcatcaatcttcatagagcttgtgactttcacatccttcaagccatgccaccaacacttcgtat 1187189  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 69 - 130
Target Start/End: Complemental strand, 1192958 - 1192897
Alignment:
Q  69 tcatcaatcttcattgagcttatgactttcacattcttcaagccatgccaccaacacttagt 130  Q
    |||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||    
T  1192958 tcatcaatcttcttagagcttatgactttcacatccttcaagccatgccaccaacacttagt 1192897  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 130
Target Start/End: Complemental strand, 896837 - 896776
Alignment:
Q  69 tcatcaatcttcattgagcttatgactttcacattcttcaagccatgccaccaacacttagt 130  Q
    |||||||||| | | ||||||||||||||||||| |||||||||||||||||||||||||||    
T  896837 tcatcaatctccttagagcttatgactttcacatccttcaagccatgccaccaacacttagt 896776  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 51 - 155
Target Start/End: Complemental strand, 1197503 - 1197400
Alignment:
Q  51 gtcttgaaatcaatattatcatcaatcttcattgagcttatgactttcacattcttcaagccatgccaccaacacttagtatcactagaactgcaacaag 150  Q
    ||||| ||||||| ||| ||||| |||||||| | |||  |||||||||||| ||||||| |||||||||||||||| ||||||  |||||||||| |||    
T  1197503 gtcttaaaatcaacattctcatcgatcttcatagtgctcgtgactttcacatccttcaagtcatgccaccaacactttgtatcatcagaactgcaa-aag 1197405  T
Q  151 cagtc 155  Q
    |||||    
T  1197404 cagtc 1197400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 128
Target Start/End: Complemental strand, 1182030 - 1181971
Alignment:
Q  69 tcatcaatcttcattgagcttatgactttcacattcttcaagccatgccaccaacactta 128  Q
    |||||||||||| | ||||||||||||||||||| ||||||| |||||||||||||||||    
T  1182030 tcatcaatcttcttagagcttatgactttcacatccttcaagtcatgccaccaacactta 1181971  T

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