View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7051_low_3 (Length: 482)
Name: NF7051_low_3
Description: NF7051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7051_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 21 - 460
Target Start/End: Original strand, 6265787 - 6266228
Alignment:
| Q |
21 |
taaaacataaagttacttataaagcataaattaatttgtaccaagatggagaataattttagtcagtcaagagttattgggaaaaaggagcatgttcctt |
120 |
Q |
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| T |
6265787 |
taaaacataaagttacttataaagcataaattaatttgtaccaagatggagaataattttagttagtcaagagttattgggaaaaaggagcatgttcctt |
6265886 |
T |
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| Q |
121 |
atcccaaacattaatttttcactttgtaattcgacnnnnnnn-cttacacccagttttagtagagctaattaactggagacaaatcgatcgacccagaaa |
219 |
Q |
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| T |
6265887 |
atctcaaacattaatttttcactttctaattcgacaaaaaaaacttacacccaattttagtagagctaattaactggagacaaatcgatcgacccagaaa |
6265986 |
T |
|
| Q |
220 |
ggaagtaagtgtatcaaaaatcgatccaaacccatctaaggctccatcgataatcttcgtaggatcagttaagctgttgatgtccaagacatttttctgc |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6265987 |
ggaagtaagtgtatcaaaaatcgatccaaacccatctaaggctccatcgataatcttcgtaggatcagttaagctgttgatgtccaagacattcttctgc |
6266086 |
T |
|
| Q |
320 |
atcagcaccaatgtgcctttgatcttatcattcccaaataggaaagacatttttgctttccaatcaagccacaatattgttaaaatagataggaagcttg |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||| |
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| T |
6266087 |
atcagcaccaatgtgcctttgatcttatcattcccaaataggaaagacatttttgcttaccgatcaagccacaatattgttaaaatggataggaagcttg |
6266186 |
T |
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| Q |
420 |
tgagaaagtcaagc-cactcactgggtatttataggccaaca |
460 |
Q |
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| T |
6266187 |
tgagaaagtcaagcacactcactgcgtatttataggccaaca |
6266228 |
T |
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