View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7051_low_4 (Length: 430)

Name: NF7051_low_4
Description: NF7051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7051_low_4
NF7051_low_4
[»] chr7 (1 HSPs)
chr7 (1-410)||(32347097-32347506)
[»] chr1 (13 HSPs)
chr1 (268-409)||(48179391-48179532)
chr1 (184-399)||(47873911-47874134)
chr1 (268-404)||(40027190-40027325)
chr1 (269-399)||(2417749-2417882)
chr1 (268-374)||(37847253-37847359)
chr1 (276-353)||(49540418-49540495)
chr1 (268-324)||(40141061-40141117)
chr1 (268-328)||(49440296-49440356)
chr1 (275-393)||(49287425-49287540)
chr1 (268-328)||(45196885-45196945)
chr1 (275-404)||(33860605-33860734)
chr1 (275-404)||(33920189-33920318)
chr1 (363-399)||(41186043-41186078)
[»] chr5 (3 HSPs)
chr5 (275-403)||(31266829-31266960)
chr5 (268-332)||(43156214-43156278)
chr5 (193-263)||(43156049-43156119)
[»] chr3 (1 HSPs)
chr3 (275-404)||(14964338-14964467)
[»] chr6 (2 HSPs)
chr6 (275-324)||(34606051-34606100)
chr6 (275-324)||(34727328-34727377)


Alignment Details
Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 32347097 - 32347506
Alignment:
Q  1 attattgtggacgacaggacgatggatggaagatgtccagggtactatgaatatcaagtggctccactaacacaatatattttgctggataaaaatgtat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  32347097 attattgtggacgacaggacgatggatggaagatgtccagggtactatgaatatcaagtggctccactaacacagtatattttgctggataaaaatgtat 32347196  T
Q  101 tatttctttaagaccacaagtaggtaaataatagtaggaagttagaaaaatattagtcagtatttaaactacagaccaatattacaactttttcctactc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32347197 tatttctttaagaccacaagtaggtaaataatagtaggaagttagaaaaatattagtcagtatttaaactacagaccaatattacaactttttcctactc 32347296  T
Q  201 tagtcaaagtattggcaacaaaaaggaaataggtcgaaacacaaaagaccacaaataacattgtgtaaagttattcaactagagaataatctacttcaga 300  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32347297 tagtcaaagtattggcaagaaaaaggaaataggtcgaaacacaaaagaccataaataacattgtgtaaagttattcaactagagaataatctacttcaga 32347396  T
Q  301 tcgtagatgtctaaaacaccaatcgaacttgagggatctttttccatgaggagctggaagcataatgcatttttgcaatcttttatcatcccctgaatag 400  Q
    | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32347397 ttgtagatgtctaaaacaccaatcgaacttgagggatctttttccataaggagctggaagcataatgcatttttgcaatcttttatcatcccctgaatag 32347496  T
Q  401 acacggcatg 410  Q
    ||||||||||    
T  32347497 acacggcatg 32347506  T

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Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 268 - 409
Target Start/End: Complemental strand, 48179532 - 48179391
Alignment:
Q  268 aagttattcaactagagaataatctacttcagatcgtagatgtctaaaacaccaatcgaacttgagggatctttttccatgaggagctggaagcataatg 367  Q
    |||||| |||||||||||||||||||||||| || || |||| ||||||||||||||| || || |||| ||| |||||||| ||||||||||| |||||    
T  48179532 aagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctggaagcgtaatg 48179433  T
Q  368 catttttgcaatcttttatcatcccctgaatagacacggcat 409  Q
    |||||||||||| |||||||||| |||||||| |||| ||||    
T  48179432 catttttgcaattttttatcatctcctgaatacacactgcat 48179391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 184 - 399
Target Start/End: Complemental strand, 47874134 - 47873911
Alignment:
Q  184 acaactttttcctactctagtcaaagtattggcaa-caaaaaggaaataggtcgaaacacaaaagaccacaaataacattgtgta--------aagttat 274  Q
    |||| ||||||||||||||||| || | ||||||| |||||||||||||||| ||| | ||||||||||||| |||||   ||||        ||||||     
T  47874134 acaagtttttcctactctagtccaatt-ttggcaaacaaaaaggaaataggtagaagcgcaaaagaccacaagtaacacgatgtacaatatgcaagttac 47874036  T
Q  275 tcaactagagaataatctacttcagatcgtagatgtctaaaacaccaatcgaacttgagggatctttttccatgaggagctggaagcataatgcattttt 374  Q
    |||||| ||||| |||| || ||| ||||||||||||||||||| ||||| ||| | |||||   |  ||||||||||||||||||| ||||||||||||    
T  47874035 tcaactggagaaaaatcaacctcatatcgtagatgtctaaaacaacaatccaacatcagggaatgtgatccatgaggagctggaagcgtaatgcattttt 47873936  T
Q  375 gcaatcttttatcatcccctgaata 399  Q
     |||| |||||||||||||||||||    
T  47873935 acaattttttatcatcccctgaata 47873911  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 268 - 404
Target Start/End: Complemental strand, 40027325 - 40027190
Alignment:
Q  268 aagttattcaactagagaataatctacttcagatcgtagatgtctaaaacaccaatcgaacttgagggatctttttccatgaggagctggaagcataatg 367  Q
    |||||| ||||| |||||||||||||| ||| |||||||| |||||||||| ||||| ||| ||   ||   | |||||||||||||||||||| ||||     
T  40027325 aagttactcaacaagagaataatctacctca-atcgtagaggtctaaaacatcaatccaacatgctagaaaatgttccatgaggagctggaagcgtaata 40027227  T
Q  368 catttttgcaatcttttatcatcccctgaatagacac 404  Q
    |||||||| ||| ||||| ||||||||||||| ||||    
T  40027226 catttttgtaattttttaccatcccctgaatacacac 40027190  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 269 - 399
Target Start/End: Original strand, 2417749 - 2417882
Alignment:
Q  269 agttattcaactagagaataatctacttcagatcgtagatgtctaaaacaccaatcgaacttgagggatctttttccat---gaggagctggaagcataa 365  Q
    ||||| ||||||  |||||||||||| ||| || |||||||||||||||||||||| ||| || | ||   | ||||||   |||||||||||||| ||     
T  2417749 agttactcaactgaagaataatctacctcatattgtagatgtctaaaacaccaatccaacatgtgagaatctgttccatacggaggagctggaagcgtac 2417848  T
Q  366 tgcatttttgcaatcttttatcatcccctgaata 399  Q
    | |||||||||||| |||||||||||||||||||    
T  2417849 tacatttttgcaattttttatcatcccctgaata 2417882  T

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Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 268 - 374
Target Start/End: Complemental strand, 37847359 - 37847253
Alignment:
Q  268 aagttattcaactagagaataatctacttcagatcgtagatgtctaaaacaccaatcgaacttgagggatctttttccatgaggagctggaagcataatg 367  Q
    |||||| ||||||||| |||||||||||||| |||||| ||||||||| |||||||| |||||| || ||||| |||||||   | || ||||| |||||    
T  37847359 aagttactcaactagaaaataatctacttcatatcgtacatgtctaaatcaccaatcaaacttgtggaatcttgttccatggaaacctagaagcgtaatg 37847260  T
Q  368 cattttt 374  Q
    |||||||    
T  37847259 cattttt 37847253  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 276 - 353
Target Start/End: Original strand, 49540418 - 49540495
Alignment:
Q  276 caactagagaataatctacttcagatcgtagatgtctaaaacaccaatcgaacttgagggatctttttccatgaggag 353  Q
    ||||||||||||||||||| ||| ||||||||| ||||||||| ||||| ||| ||| ||| ||| ||||||||||||    
T  49540418 caactagagaataatctacctcatatcgtagatttctaaaacaacaatccaacatgaaggaacttgttccatgaggag 49540495  T

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Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 268 - 324
Target Start/End: Complemental strand, 40141117 - 40141061
Alignment:
Q  268 aagttattcaactagagaataatctacttcagatcgtagatgtctaaaacaccaatc 324  Q
    |||||| |||||||||||||||||||| ||| || ||||||||||||||||||||||    
T  40141117 aagttactcaactagagaataatctacctcatattgtagatgtctaaaacaccaatc 40141061  T

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Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 268 - 328
Target Start/End: Original strand, 49440296 - 49440356
Alignment:
Q  268 aagttattcaactagagaataatctacttcagatcgtagatgtctaaaacaccaatcgaac 328  Q
    |||||| | ||| ||||||||||||||||||  ||||||||||||||||||||||||||||    
T  49440296 aagttactaaaccagagaataatctacttcatgtcgtagatgtctaaaacaccaatcgaac 49440356  T

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Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 393
Target Start/End: Complemental strand, 49287540 - 49287425
Alignment:
Q  275 tcaactagagaataatctacttcagatcgtagatgtctaaaacaccaatcgaacttgagggatctttttccatgaggagctggaagcataatgcattttt 374  Q
    |||||||| ||||||||||| ||| || ||||||||||||| |||||||| ||| ||  |||   |  | ||||||   |||||||||||||||||||||    
T  49287540 tcaactagggaataatctacctcatattgtagatgtctaaatcaccaatcaaacatgtaggaatgtgctgcatgag---ctggaagcataatgcattttt 49287444  T
Q  375 gcaatcttttatcatcccc 393  Q
     |||| |||||||||||||    
T  49287443 tcaattttttatcatcccc 49287425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 328
Target Start/End: Complemental strand, 45196945 - 45196885
Alignment:
Q  268 aagttattcaactagagaataatctacttcagatcgtagatgtctaaaacaccaatcgaac 328  Q
    |||||| | |||||||||||||||||  ||| || || |||||||||||||||||||||||    
T  45196945 aagttacttaactagagaataatctatctcatattgttgatgtctaaaacaccaatcgaac 45196885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 404
Target Start/End: Complemental strand, 33860734 - 33860605
Alignment:
Q  275 tcaactagagaataatctacttcagatcgtagatgtctaaaacaccaatcgaacttgagggatctttttccatgaggagctggaagcataatgcattttt 374  Q
    ||||||||||||||||||| ||||   ||||||  ||||| ||||||||| ||| |||| || ||| |||||| |  || || || | |||| |||||||    
T  33860734 tcaactagagaataatctatttcattccgtagacatctaatacaccaatcaaacatgagagaacttgttccatcaacagttgaaaccgtaatacattttt 33860635  T
Q  375 gcaatcttttatcatcccctgaatagacac 404  Q
    ||||  |||||||||| | |||||| ||||    
T  33860634 gcaactttttatcatctcatgaatacacac 33860605  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 404
Target Start/End: Original strand, 33920189 - 33920318
Alignment:
Q  275 tcaactagagaataatctacttcagatcgtagatgtctaaaacaccaatcgaacttgagggatctttttccatgaggagctggaagcataatgcattttt 374  Q
    ||||||||||||||||||| ||||   ||||||  ||||| ||||||||| ||| |||| || ||| |||||| |  || || || | |||| |||||||    
T  33920189 tcaactagagaataatctatttcattccgtagacatctaatacaccaatcaaacatgagagaacttgttccatcaacagttgaaaccgtaatacattttt 33920288  T
Q  375 gcaatcttttatcatcccctgaatagacac 404  Q
    ||||  |||||||||| | |||||| ||||    
T  33920289 gcaactttttatcatctcatgaatacacac 33920318  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 399
Target Start/End: Complemental strand, 41186078 - 41186043
Alignment:
Q  363 taatgcatttttgcaatcttttatcatcccctgaata 399  Q
    ||||||||||||||||| |||||||||||||||||||    
T  41186078 taatgcatttttgcaat-ttttatcatcccctgaata 41186043  T

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Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 275 - 403
Target Start/End: Complemental strand, 31266960 - 31266829
Alignment:
Q  275 tcaactagagaataatctacttcagatcgtagatgtctaaaacaccaatcgaacttgagggatctttttccatgaggagctggaagcataatgcattttt 374  Q
    |||||||||||||||||||||||||||||||||| ||||||| || | |||||||| | ||| ||| ||| || ||||| ||||||  ||||||||||||    
T  31266960 tcaactagagaataatctacttcagatcgtagatttctaaaatactagtcgaacttaaaggaacttgttctattaggagttggaagtgtaatgcattttt 31266861  T
Q  375 gcaa---tcttttatcatcccctgaatagaca 403  Q
    ||||   | |||||||||||||||||||||||    
T  31266860 gcaattttattttatcatcccctgaatagaca 31266829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 268 - 332
Target Start/End: Original strand, 43156214 - 43156278
Alignment:
Q  268 aagttattcaactagagaataatctacttcagatcgtagatgtctaaaacaccaatcgaacttga 332  Q
    |||||| ||||||||||||||||| |||| |||  |||||||||||||| |||||| ||||||||    
T  43156214 aagttactcaactagagaataatcaacttgagacggtagatgtctaaaataccaattgaacttga 43156278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 193 - 263
Target Start/End: Original strand, 43156049 - 43156119
Alignment:
Q  193 tcctactctagtcaaagtattggcaa-caaaaaggaaataggtcgaaacacaaaagaccacaaataacattg 263  Q
    |||||||||||| ||| ||||||||| ||||||||||||||||| |||||| ||||| ||||| ||||||||    
T  43156049 tcctactctagttaaattattggcaagcaaaaaggaaataggtcaaaacac-aaagatcacaagtaacattg 43156119  T

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Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 275 - 404
Target Start/End: Complemental strand, 14964467 - 14964338
Alignment:
Q  275 tcaactagagaataatctacttcagatcgtagatgtctaaaacaccaatcgaacttgagggatctttttccatgaggagctggaagcataatgcattttt 374  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||| | | | | | | ||| || |||  |||||||||||| ||||||||||||    
T  14964467 tcaactagagaataatctacttcatattgtagatgtctaaaacaccaatctaccatcaagcaccttgttgcatctggagctggaagcgtaatgcattttt 14964368  T
Q  375 gcaatcttttatcatcccctgaatagacac 404  Q
    |||||  |||||||||||| ||||| ||||    
T  14964367 gcaattgtttatcatccccagaatacacac 14964338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 324
Target Start/End: Complemental strand, 34606100 - 34606051
Alignment:
Q  275 tcaactagagaataatctacttcagatcgtagatgtctaaaacaccaatc 324  Q
    ||||| |||| ||||||||| ||| || ||||||||||||||||||||||    
T  34606100 tcaacgagagtataatctacctcatattgtagatgtctaaaacaccaatc 34606051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 324
Target Start/End: Complemental strand, 34727377 - 34727328
Alignment:
Q  275 tcaactagagaataatctacttcagatcgtagatgtctaaaacaccaatc 324  Q
    ||||| |||| ||||||||| ||| || ||||||||||||||||||||||    
T  34727377 tcaacgagagtataatctacctcatattgtagatgtctaaaacaccaatc 34727328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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