View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7051_low_5 (Length: 414)
Name: NF7051_low_5
Description: NF7051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7051_low_5 |
 | |
|
| [»] scaffold0042 (1 HSPs) |
| | |
|
| [»] scaffold0290 (1 HSPs) |
| | |
|
| [»] scaffold0005 (2 HSPs) |
| | |
|
| [»] scaffold0047 (1 HSPs) |
| | |
|
| [»] scaffold0627 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0042 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 2 - 353
Target Start/End: Complemental strand, 10313 - 9960
Alignment:
| Q |
2 |
taacttgttctattgcataagcttgatcttgactcgaaacatatcagaatcatattcatatccatc--cattctttatgttagaagttagcatgtaacaa |
99 |
Q |
| |
|
||||||||||||||| ||||||||| |||| || ||||||||||| ||||||||||||| ||| ||||| ||||||||| |||||| | ||||| |
|
|
| T |
10313 |
taacttgttctattggataagcttgttcttttcttgaaacatatcataatcatattcataatcatgttcattcattatgttagcggttagcgttgaacaa |
10214 |
T |
|
| Q |
100 |
acaacattattttggttcattttacggagtgtgtcaggtggagtaaccccgagtacaatccctcacttgaccgatgaaaacctagctaaggtacatcgga |
199 |
Q |
| |
|
| || ||||||| |||||||||||||||||| || | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10213 |
aaaatattatttgagttcattttacggagtgtatctg-tggagtaaccccgagtacaatcccttacttgaccgatgaaaacctagctaaggtacatcgga |
10115 |
T |
|
| Q |
200 |
ctccctcagtgacgtgcgggcctaccttgcggagcgtattctgatcccctggcgagaacctctcgtatcccccttggcgtggataacgaaaagacacgac |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||| |||||||| |||||| ||| |
|
|
| T |
10114 |
ctccctcagtgacgtgcgggcctaccttgcggagcgtatcccgttcccctggcgagaacctctcgtatcccccttggcaaggataacggtaagacatgac |
10015 |
T |
|
| Q |
300 |
acctacatcttac-ttatggtattgaccatacatgataacttatcttagtactta |
353 |
Q |
| |
|
||||||||||||| ||||||| ||||||||| ||||||| || |||||||||||| |
|
|
| T |
10014 |
acctacatcttactttatggtcttgaccatatatgataatttgtcttagtactta |
9960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 24058151 - 24057754
Alignment:
| Q |
1 |
ataacttgttctattgcataagcttgatcttgactcgaaacatatcagaatcatattcatatccatccattctttatgttagaagttagcatgtaacaaa |
100 |
Q |
| |
|
||||||||||||||||| ||||||| |||| ||||||||||||| |||||||| ||||| |||| ||||||||||||||||| ||||||||| |
|
|
| T |
24058151 |
ataacttgttctattgcgtaagcttattcttatctcgaaacatatcgtaatcatat-catatacatc------ttatgttagaagttagcgtgtaacaaa |
24058059 |
T |
|
| Q |
101 |
caacattattttggttcattttacggagtgtgtcaggtggagtaaccccgagtacaatccctcacttgaccgatgaaaacctagctaaggtacatcggac |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
24058058 |
caacattatcttggttcattttacggagtgcatcgagtggagtaaccccgagtacaatcccttacttgaccgatgaaaatctagctaaggtacatcagac |
24057959 |
T |
|
| Q |
201 |
tccctcagtgacgtgcgggcctaccttgcggagcgtattctgatcccctggcgagaacctctcgtatcccccttggcgtggataacgaaaagacacgaca |
300 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||| | |||||| |||||||||||||||||||| ||||| |||||||||| |||||||||||| |
|
|
| T |
24057958 |
tccctcggtgacgtgcgggcctaccttacggagcgtatctcgttcccctagcgagaacctctcgtatccctcttggtgtggataacggaaagacacgaca |
24057859 |
T |
|
| Q |
301 |
cctacatcttact-tatggtattgaccatacatgataacttatcttagtacttagcacttgcttacttagtcattcttactcatggtgaagagattattc |
399 |
Q |
| |
|
||||||||||||| |||||| ||||||||| |||||| ||| | |||||||||| |||||||| |||||||| |||| ||||||||| ||| | |
|
|
| T |
24057858 |
cctacatcttactctatggtcttgaccatatatgatagcttgttttagtactta-------cttacttaatcattcttgttcatagtgaagagactatgc |
24057766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 78 - 307
Target Start/End: Complemental strand, 23308417 - 23308188
Alignment:
| Q |
78 |
gttagaagttagcatgtaacaaacaacattattttggttcattttacggagtgtgtcaggtggagtaaccccgagtacaatccctcacttgaccgatgaa |
177 |
Q |
| |
|
|||||| |||||||| |||||||| |||| ||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
23308417 |
gttagaggttagcattgaacaaacatagttatcttggttcattttacggagtgtatcgggtggagtaaccccgagtacaatcccttacttgaccgatgaa |
23308318 |
T |
|
| Q |
178 |
aacctagctaaggtacatcggactccctcagtgacgtgcgggcctaccttgcggagcgtattctgatcccctggcgagaacctctcgtatcccccttggc |
277 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||| | | | |||||||||||||||||||||||||||||||| |
|
|
| T |
23308317 |
aacctagctaaggtacatcggactctctcactgacgtgcgagcctaccttgcggagcgtatcccgtttccctggcgagaacctctcgtatcccccttggc |
23308218 |
T |
|
| Q |
278 |
gtggataacgaaaagacacgacacctacat |
307 |
Q |
| |
|
|||||||||| || |||||||||||||||| |
|
|
| T |
23308217 |
gtggataacggaaggacacgacacctacat |
23308188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 156 - 414
Target Start/End: Complemental strand, 43516734 - 43516483
Alignment:
| Q |
156 |
aatccctcacttgaccgatgaaaacctagctaaggtacatcggactccctcagtgacgtgcgggcctaccttgcggagcgtattctgatcccctggcgag |
255 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||| | |||||| | ||| |
|
|
| T |
43516734 |
aatcccttacttgaccgatgaaaacctagctaaggtacatcagactccctcagtggcgtgcgggcctaccttgcggagtgtatctcgttccccttgtgag |
43516635 |
T |
|
| Q |
256 |
aacctctcgtatcccccttggcgtggataacgaaaagacacgacacctacatcttac-ttatggtattgaccatacatgataacttatcttagtacttag |
354 |
Q |
| |
|
||||| || ||||||| |||| |||||||||| ||||||||||||| |||||||||| ||||||| ||||||||| ||||| |||| ||||||| |
|
|
| T |
43516634 |
aacctgtcatatccccattggtgtggataacggaaagacacgacacttacatcttactttatggtcttgaccatatatgat-acttgtcttagt------ |
43516542 |
T |
|
| Q |
355 |
cacttgcttacttagtcattcttactcatggtgaagagattattcttatcaattcacaac |
414 |
Q |
| |
|
| ||||||||||| |||| |||| |||| |||||||||||| | ||||| |||||||| |
|
|
| T |
43516541 |
-atttgcttacttaatcatgcttaatcataatgaagagattatgcctatcacttcacaac |
43516483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 114 - 315
Target Start/End: Complemental strand, 10215965 - 10215762
Alignment:
| Q |
114 |
gttcattttacggagtgtgtcaggtggagtaaccccgagtacaatccctcacttgaccgatgaaaacctagctaaggtacatcggactccctcagtgacg |
213 |
Q |
| |
|
|||||||||||||||||| || | |||||||||||||||||||||| | || ||||||||||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
10215965 |
gttcattttacggagtgtatcggatggagtaaccccgagtacaatctcatacatgaccgatgaattcctagctaaggtacatcggactccctcagtgtcg |
10215866 |
T |
|
| Q |
214 |
tgcgggc----ctaccttgcggagcgtattctgatcccctggcgagaacctctcgtatcccccttggcgtggataacgaaaagacacgacacctacatct |
309 |
Q |
| |
|
||| || | ||||||||||| ||| | | |||||||| | |||||||| ||||||||| | ||||||||| | || ||||||||||||||||||| |
|
|
| T |
10215865 |
tgcatgcagagcccccttgcggagcttatcccgttcccctggtgtgaacctcttgtatccccc-tagcgtggatagc-aagagacacgacacctacatct |
10215768 |
T |
|
| Q |
310 |
tactta |
315 |
Q |
| |
|
| |||| |
|
|
| T |
10215767 |
tgctta |
10215762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 105 - 262
Target Start/End: Complemental strand, 24090512 - 24090356
Alignment:
| Q |
105 |
attattttggttcattttacggagtgtgtcaggtggagtaaccccgagtacaatccctcacttgaccgatgaaaacctagctaaggtacatcggactccc |
204 |
Q |
| |
|
||||| ||| |||||||||||||| | ||||||||||||||| ||||| |||||| || ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
24090512 |
attatcttgattcattttacggagagcc-caggtggagtaaccctgagtataatcccatacatgaccgatgaaaacctagctaagatacatcggactccc |
24090414 |
T |
|
| Q |
205 |
tcagtgacgtgcgggcctaccttgcggagcgtattctgatcccctggcgagaacctct |
262 |
Q |
| |
|
||||||||||| | ||| ||||| |||| ||| | | ||||||||||||||||||| |
|
|
| T |
24090413 |
tcagtgacgtgtgtgccccccttgtagagcttatcccgttcccctggcgagaacctct |
24090356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 114 - 201
Target Start/End: Complemental strand, 10216078 - 10215991
Alignment:
| Q |
114 |
gttcattttacggagtgtgtcaggtggagtaaccccgagtacaatccctcacttgaccgatgaaaacctagctaaggtacatcggact |
201 |
Q |
| |
|
|||||||||||||||||| || | |||||||||||||||||||||| | || ||||||||||| |||||||||||||||||||||| |
|
|
| T |
10216078 |
gttcattttacggagtgtatcggatggagtaaccccgagtacaatctcatacatgaccgatgaattcctagctaaggtacatcggact |
10215991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 74 - 352
Target Start/End: Original strand, 39888526 - 39888803
Alignment:
| Q |
74 |
ttatgttagaagttagcatgtaacaaacaacattattttggttcattttacggagtgtgtcaggtggagtaaccccgagtacaatccctcacttgaccga |
173 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
39888526 |
ttatgttagaagttagcgtgtaacaaacaacattatcttggttcattttacggagtgcatcgggtggagtaaccccgagtacattcccttacttgaccga |
39888625 |
T |
|
| Q |
174 |
tgaaaacctagctaaggtacatcggactccctcagtgacgtgcgggcctaccttgcggagcgtattctgatcccctggcgagaacctctcgtatccccct |
273 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | | |||||| ||||||||||||||||||||| |
|
|
| T |
39888626 |
tgaaaacctagctaaggtacaccggactccctcagtgacgtgcgggcctaccttgcggagcgtatcccgttcccct--tgagaacctctcgtatccccct |
39888723 |
T |
|
| Q |
274 |
tggcgtggataacgaaaagacacgacacctacatcttac-ttatggtattgaccatacatgataacttatcttagtactt |
352 |
Q |
| |
|
|||||||||||||| |||| ||||||| ||||||||||| ||||||| ||||||||| |||||| ||| ||||||||||| |
|
|
| T |
39888724 |
tggcgtggataacggaaagccacgacaactacatcttactttatggtcttgaccatatatgatatcttgtcttagtactt |
39888803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 74 - 346
Target Start/End: Original strand, 3083319 - 3083590
Alignment:
| Q |
74 |
ttatgttagaagttagcatgtaacaaacaacattattttggttcattttacggagtgtgtcaggtggagtaaccccgagtacaatccctcacttgaccga |
173 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||| | |||||||| |
|
|
| T |
3083319 |
ttatgttagaagttagcgtgtaacaa-caacattatcttggttcattttacggagtgtatcaggtggagtaaccccgagtacattcccttaattgaccga |
3083417 |
T |
|
| Q |
174 |
tgaaaacctagctaaggtacatcggactccctcagtgacgtgcgggcctaccttgcggagcgtattctgatcccctggcgagaacctctcgtatccccct |
273 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||| | | |||||| | ||||||||||||||||||||| |
|
|
| T |
3083418 |
tgaaaacctagctaaggtacactggactccctcagtgacgtgcgggcctaccttttggagcatatcccgttccccttg-gagaacctctcgtatccccct |
3083516 |
T |
|
| Q |
274 |
tggcgtggataacgaaaagacacgacacctacatcttac-ttatggtattgaccatacatgataacttatctta |
346 |
Q |
| |
|
||| ||||||||| |||||||||||| ||||||||||| ||||||| || |||||| |||||| ||||||||| |
|
|
| T |
3083517 |
tggtgtggataacagaaagacacgacatctacatcttactttatggtctttaccatatatgatatcttatctta |
3083590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 15562051 - 15561716
Alignment:
| Q |
1 |
ataacttgttctattgcataagcttgatcttgactcgaaacatatcagaatcatattcatatccatccattctttatgttagaagttagcatgtaacaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||| | |||||||||||||| ||| ||||||||||| ||||||| ||||||||| |
|
|
| T |
15562051 |
ataacttgttctattgcataagcttgttcttaactcgaaacataacgtaatcatattcatattcat----tctttatgttataagttagtgtgtaacaaa |
15561956 |
T |
|
| Q |
101 |
caacattattttggttcattttacggagtgtgtcaggtggagtaaccccgagtac--aatccctcacttgaccgatgaaaacctagctaaggtacatcgg |
198 |
Q |
| |
|
||||||||| |||||||| |||||| || ||| ||| | | ||| ||| ||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
15561955 |
caacattatcttggttcaatttacg--------------gattaatccctggaaattaattccttacttgaccgttgagaacctagctaaggtacatcgg |
15561870 |
T |
|
| Q |
199 |
actccctcagtgacgtgcgggcctaccttgcggagcgtattctgatcccctggcgagaacctctcgtatcccccttggcgtggataacgaaaagacacga |
298 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||| | | |||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
15561869 |
actccctcaatgacgtgcgggccgaccttgcggagcgtatcccgttccccttgcgagaacctctcgtatcccccttggcgtggataacggaaagacacga |
15561770 |
T |
|
| Q |
299 |
cacctacatcttacttatggtattgaccatacatgataacttatcttagtactt |
352 |
Q |
| |
|
|||||||||||| ||||| || |||| |||| ||||||| || ||||||||||| |
|
|
| T |
15561769 |
cacctacatcttgcttatagtcttgatcataaatgataatttgtcttagtactt |
15561716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 119 - 238
Target Start/End: Complemental strand, 11245626 - 11245506
Alignment:
| Q |
119 |
ttttacggagtgtgtcaggtggagtaaccccgagtacaatccctcacttgaccgatgaaaacctagctaaggtacatcggactcc-ctcagtgacgtgcg |
217 |
Q |
| |
|
||||||||| ||| || |||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| || | || ||| || |
|
|
| T |
11245626 |
ttttacggaatgtatcgagtggagtaaccccgagtacaatcccttactttaccgatgaattcctagctaaggtacatcggactcctcttaatgccgtacg |
11245527 |
T |
|
| Q |
218 |
ggcctaccttgcggagcgtat |
238 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
11245526 |
ggccgaccttgcggagcgtat |
11245506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 17147546 - 17147486
Alignment:
| Q |
67 |
ccattctttatgttagaagttagcatgtaacaaacaacattattttggttcattttacgga |
127 |
Q |
| |
|
|||||| ||||||||| ||||||| |||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
17147546 |
ccattcattatgttaggagttagcgtgtaacaaacaacattatcttggttcgttttacgga |
17147486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 18380601 - 18380658
Alignment:
| Q |
67 |
ccattctttatgttagaagttagcatgtaacaaacaacattattttggttcattttac |
124 |
Q |
| |
|
|||||| ||||||||| |||||| |||||||||||||||||| ||||||| |||||| |
|
|
| T |
18380601 |
ccattcattatgttagcagttagtgtgtaacaaacaacattatcttggttcgttttac |
18380658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 184; Significance: 2e-99; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 28086375 - 28086729
Alignment:
| Q |
1 |
ataacttgttctattgcataagcttgatcttgactcgaaacatatcagaatcatattcatatccatc--cattctttatgttagaagttagcatgtaaca |
98 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||| ||| ||||||||| ||||||||||||| ||||||| |
|
|
| T |
28086375 |
ataacttgttctattgcataagcttgttcttaactcgaaacatatcgtaatcatattcatatgcataatcattctttaagttagaagttagcgtgtaaca |
28086474 |
T |
|
| Q |
99 |
aacaacattattttggttcattttacggagt-gtgtcaggtggagtaaccccg--agtacaatccctcacttgaccgatgaaaacctagctaaggtacat |
195 |
Q |
| |
|
||||||||||| ||||||||||||||||| | | | ||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
28086475 |
aacaacattatcttggttcattttacggattaatcccgggtggagtaaccccggaagt-taatcccttacttgaccgatgaaaacctagctaaggtacat |
28086573 |
T |
|
| Q |
196 |
cggactccctcagtgacgtgcgggcctaccttgcggagcgtattctgatcccctggcgagaacctctcgtatcccccttggcgtggataacgaaaagaca |
295 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||||| | | |||| | ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28086574 |
cggactccctctgtgacgtgcgggcctaccttacggagcgtatcccatttcccttg-gagaacctctcgtatcccccttggcgtggataacggaaagaca |
28086672 |
T |
|
| Q |
296 |
cgacacctacatcttac-ttatggtattgaccatacatgataacttatcttagtactt |
352 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||| ||||| |||| ||||||||||| |
|
|
| T |
28086673 |
cgacacctacatcttactttatggtcttgaccatatatgat-acttgtcttagtactt |
28086729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 68 - 315
Target Start/End: Complemental strand, 10702188 - 10701943
Alignment:
| Q |
68 |
cattctttatgttagaagttagcatgtaacaaacaacattattttggttcattttacggagtgtgtcaggtggagtaaccccgagtacaatccctcactt |
167 |
Q |
| |
|
||||| |||||||||| |||||| | |||||||| |||| ||||||| |||||| ||||| || ||||||||||||||||||||||||||| || | |
|
|
| T |
10702188 |
cattcattatgttagaggttagcgttgaacaaacatagttatcttggttcgttttacagagtgcatcgggtggagtaaccccgagtacaatcccttacat |
10702089 |
T |
|
| Q |
168 |
gaccgatgaaaacctagctaaggtacatcggactccctcagtgacgtgcgggcctaccttgcggagcgtattctgatcccctggcgagaacctctcgtat |
267 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||| |||||||| |||||||||||||||| | ||| |||||||||| |||||||| |||| |
|
|
| T |
10702088 |
gaccgatgaaaacctaggtaaggtacatcagactccctcagtgtcgtgcgggtctaccttgcggagcgtgtcctgttcccctggcgtgaacctcttgtat |
10701989 |
T |
|
| Q |
268 |
cccccttggcgtggataacgaaa-agacacgacacctacatcttactta |
315 |
Q |
| |
|
||||| ||||||||||| |||| |||||||||||||||||||| |||| |
|
|
| T |
10701988 |
ccccc-tggcgtggata--gaaagagacacgacacctacatcttgctta |
10701943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 68 - 315
Target Start/End: Complemental strand, 10915958 - 10915713
Alignment:
| Q |
68 |
cattctttatgttagaagttagcatgtaacaaacaacattattttggttcattttacggagtgtgtcaggtggagtaaccccgagtacaatccctcactt |
167 |
Q |
| |
|
||||| |||||||||| |||||| | |||||||| |||| ||||||| |||||| ||||| || ||||||||||||||||||||||||||| || | |
|
|
| T |
10915958 |
cattcattatgttagaggttagcgttgaacaaacatagttatcttggttcgttttacagagtgcatcgggtggagtaaccccgagtacaatcccttacat |
10915859 |
T |
|
| Q |
168 |
gaccgatgaaaacctagctaaggtacatcggactccctcagtgacgtgcgggcctaccttgcggagcgtattctgatcccctggcgagaacctctcgtat |
267 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||| |||||||| |||||||||||||||| | ||| |||||||||| |||||||| |||| |
|
|
| T |
10915858 |
gaccgatgaaaacctaggtaaggtacatcagactccctcagtgtcgtgcgggtctaccttgcggagcgtgtcctgttcccctggcgtgaacctcttgtat |
10915759 |
T |
|
| Q |
268 |
cccccttggcgtggataacgaaa-agacacgacacctacatcttactta |
315 |
Q |
| |
|
||||| ||||||||||| |||| |||||||||||||||||||| |||| |
|
|
| T |
10915758 |
ccccc-tggcgtggata--gaaagagacacgacacctacatcttgctta |
10915713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 143 - 315
Target Start/End: Original strand, 10668933 - 10669103
Alignment:
| Q |
143 |
taaccccgagtacaatccctcacttgaccgatgaaaacctagctaaggtacatcggactccctcagtgacgtgcgggcctaccttgcggagcgtattctg |
242 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||| | ||| |
|
|
| T |
10668933 |
taaccccgagtacaatcccttacacgaccgatgaaaacctagataaggtacatcggactccctcagtgtcgtgcgggtctaccttgcggagcgtgtcctg |
10669032 |
T |
|
| Q |
243 |
atcccctggcgagaacctctcgtatcccccttggcgtggataacgaaaagacacgacacctacatcttactta |
315 |
Q |
| |
|
|||||||||| |||||||| ||||||||| ||||||||||| | || |||||||||||||||||||| |||| |
|
|
| T |
10669033 |
ttcccctggcgtgaacctcttgtatccccc-tggcgtggatagc-aagagacacgacacctacatcttgctta |
10669103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 143 - 315
Target Start/End: Original strand, 10882572 - 10882742
Alignment:
| Q |
143 |
taaccccgagtacaatccctcacttgaccgatgaaaacctagctaaggtacatcggactccctcagtgacgtgcgggcctaccttgcggagcgtattctg |
242 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||| | ||| |
|
|
| T |
10882572 |
taaccccgagtacaatcccttacacgaccgatgaaaacctagataaggtacatcggactccctcagtgtcgtgcgggtctaccttgcggagcgtgtcctg |
10882671 |
T |
|
| Q |
243 |
atcccctggcgagaacctctcgtatcccccttggcgtggataacgaaaagacacgacacctacatcttactta |
315 |
Q |
| |
|
|||||||||| |||||||| ||||||||| ||||||||||| | || |||||||||||||||||||| |||| |
|
|
| T |
10882672 |
ttcccctggcgtgaacctcttgtatccccc-tggcgtggatagc-aagagacacgacacctacatcttgctta |
10882742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 74 - 301
Target Start/End: Complemental strand, 14283216 - 14282992
Alignment:
| Q |
74 |
ttatgttagaagttagcatgtaacaaacaacattattttggttcattttacggagtgtgtcaggtggagtaaccccgagtacaatccctcacttgaccga |
173 |
Q |
| |
|
|||| ||||| |||||| |||||||||||| |||| | |||| |||||||||||| || |||||||||||||||| |||| ||||| |||| ||||| |
|
|
| T |
14283216 |
ttatattagatgttagcgtgtaacaaacaa--ttatctgggttgcttttacggagtgcatcgggtggagtaaccccgaatacattcccttactt-accga |
14283120 |
T |
|
| Q |
174 |
tgaaaacctagctaaggtacatcggactcc-ctcagtgacgtgcgggcctaccttgcggagcgtattctgatcccctggcgagaacctctcgtatccccc |
272 |
Q |
| |
|
|||| | |||||||||| ||||||||||| || | || ||||| ||||||||||||||||||||| ||| |||||| | |||||||||||||||||||| |
|
|
| T |
14283119 |
tgaattcttagctaaggtgcatcggactcctcttaatgccgtgcaggcctaccttgcggagcgtatcctgttccccttg-gagaacctctcgtatccccc |
14283021 |
T |
|
| Q |
273 |
ttggcgtggataacgaaaagacacgacac |
301 |
Q |
| |
|
||||||||||||||| ||||||||||||| |
|
|
| T |
14283020 |
ttggcgtggataacggaaagacacgacac |
14282992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 68 - 342
Target Start/End: Original strand, 11169594 - 11169868
Alignment:
| Q |
68 |
cattctttatgttagaagttagcatgtaacaaacaacattattttggttcattttacggagtgtgtcaggtggag--taaccccgagtacaatccctcac |
165 |
Q |
| |
|
||||| ||||||||| |||||| | |||||||| |||| ||| ||||||||||||||||| || ||||||| ||||||||||||||||||| || |
|
|
| T |
11169594 |
cattcattatgttaggggttagcgttgaacaaacatagttatcttgattcattttacggagtgtatcgggtggagagtaaccccgagtacaatcccatac |
11169693 |
T |
|
| Q |
166 |
ttgaccgatgaaaacctagctaaggtacatcggactccctcagtgacgtgcgggcctaccttgcggagcgtattctgatcccctggcgagaacctctcgt |
265 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||| |||||| ||||||| || |||||||||||| | | | | |||||||| | |||||||| || |
|
|
| T |
11169694 |
atgacctatgaaaacctaactaaggtacatcggactccttcagtgtcgtgcggacccaccttgcggagcttgtcccgttcccctggtgtgaacctcttgt |
11169793 |
T |
|
| Q |
266 |
atcccccttggcgtggataacgaaaagacacgacacctacatcttacttatggtattgaccatacatgataacttat |
342 |
Q |
| |
|
||||||| || | |||||| | || |||||||||||||||||||| |||| || ||| ||||||||||||||||| |
|
|
| T |
11169794 |
atccccc-tgacatggatagc-aagagacacgacacctacatcttgcttaaagtcttgttcatacatgataacttat |
11169868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 75 - 284
Target Start/End: Complemental strand, 14817523 - 14817315
Alignment:
| Q |
75 |
tatgttagaa-gttagcatgtaacaaacaacattattttggttcattttacggagtgtgtcaggtggagtaaccccgagtacaatccctcacttgaccga |
173 |
Q |
| |
|
|||||||||| |||||| ||||||| |||| |||| | ||| |||||||||||||| || |||||||||||||||||||||||||| || ||||||| |
|
|
| T |
14817523 |
tatgttagaaagttagcgtgtaacatacaa--ttatctgagttgattttacggagtgtatcgggtggagtaaccccgagtacaatcccatacatgaccga |
14817426 |
T |
|
| Q |
174 |
tgaaaacctagctaaggtacatcggactcc-ctcagtgacgtgcgggcctaccttgcggagcgtattctgatcccctggcgagaacctctcgtatccccc |
272 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||| ||| ||||| ||||||||||| ||||||| | | | ||||||| | |||||||| ||||||||| |
|
|
| T |
14817425 |
tgaattcctagctaaggtacatcggactcctctcggtgccgtgcaggcctaccttgtggagcgtgtcccgttcccctgaggtgaacctcttgtatccccc |
14817326 |
T |
|
| Q |
273 |
ttggcgtggata |
284 |
Q |
| |
|
||||||||||| |
|
|
| T |
14817325 |
-tggcgtggata |
14817315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 67 - 236
Target Start/End: Complemental strand, 14827304 - 14827135
Alignment:
| Q |
67 |
ccattctttatgttagaa-gttagcatgtaacaaacaacattattttggttcattttacggagtgtgtcaggtggagtaaccccgagtacaatccctcac |
165 |
Q |
| |
|
|||||| ||||||| ||| |||||| ||||||| |||| |||| | ||| |||||| |||||| || |||||||||||||||||||||||| | || |
|
|
| T |
14827304 |
ccattcattatgttggaaagttagcgtgtaacatacaa--ttatctgagtttattttatggagtgcatcgggtggagtaaccccgagtacaatctcatac |
14827207 |
T |
|
| Q |
166 |
ttgaccgatgaaaacctagctaaggtacatcggactcc-ctcagtgacgtgcgggcctaccttgcggagcgt |
236 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||| || | | |||||| ||||||||||||||||||| |
|
|
| T |
14827206 |
atgaccgatgaattcctagctaaggtacatcaatctcctctgaattacgtgcaggcctaccttgcggagcgt |
14827135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 68 - 127
Target Start/End: Original strand, 22674684 - 22674743
Alignment:
| Q |
68 |
cattctttatgttagaagttagcatgtaacaaacaacattattttggttcattttacgga |
127 |
Q |
| |
|
||||| |||||||||| |||||| ||||||||||| |||||| ||||||| ||||||||| |
|
|
| T |
22674684 |
cattcattatgttagaggttagcgtgtaacaaacagcattatcttggttcgttttacgga |
22674743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 21324120 - 21324010
Alignment:
| Q |
118 |
attttacggagtgtgtcaggtggagtaaccccgagtacaatccc-tcacttgaccgatgaaaacctagctaaggtacatcggactcc-ctcagtgacgtg |
215 |
Q |
| |
|
||||||| ||||| || |||||||||||| ||||||||||||| | || | ||||||||| ||||||||||||||| ||||||| || | || |||| |
|
|
| T |
21324120 |
attttacaaagtgtatcgggtggagtaacctcgagtacaatcccgtaacataaccgatgaattcctagctaaggtacactggactcctcttaatgccgtg |
21324021 |
T |
|
| Q |
216 |
cgggcctacct |
226 |
Q |
| |
|
||||||||||| |
|
|
| T |
21324020 |
cgggcctacct |
21324010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 179; Significance: 2e-96; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 24539768 - 24540109
Alignment:
| Q |
1 |
ataacttgttctattgcataagcttgatcttgactcgaaacatatcagaatcatattcatatccatccattctttatgttagaagttagcatgtaacaaa |
100 |
Q |
| |
|
||||||| ||||||||||||| |||| ||||| |||| || || | || ||||||||||| ||| | |||||||||| ||||| ||||||||| |
|
|
| T |
24539768 |
ataacttattctattgcataaacttgttcttgtctcgtaatgtaacgtaaacatattcatattcattc-----ttatgttagatgttagtgtgtaacaaa |
24539862 |
T |
|
| Q |
101 |
caacattattttggttcattttacggagtgtgtcaggtggagtaaccccgagtacaatccctcacttgaccgatgaaaacctagctaaggtacatcggac |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| | ||| |
|
|
| T |
24539863 |
caacattatcttggttcattttacggagtgcatcgagtggagtaaccccgagtacaatcccttacttgacagatgaaaacctagctaaggtacaccagac |
24539962 |
T |
|
| Q |
201 |
tccctcagtgacgtgcgggcctaccttgcggagcgtattctgatcccctggcgagaacctctcgtatcccccttggcgtggataacgaaaagacacgaca |
300 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||| | | |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
24539963 |
tccctcagtgacgtgcgggcataccttgcggaccgtatccagttcccctggcgagaacctctcgtatcccccttggcgtggataacggaaagacatgaca |
24540062 |
T |
|
| Q |
301 |
cctacatcttac-ttatggtattgaccatacatgataacttatctta |
346 |
Q |
| |
|
|||||||||||| ||||||| ||||||||| |||||||||| ||||| |
|
|
| T |
24540063 |
cctacatcttactttatggtcttgaccatatatgataacttgtctta |
24540109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 19440960 - 19440611
Alignment:
| Q |
1 |
ataacttgttctattgcataagcttgatcttgactcgaaacatatcagaatcatattcatatccatc--cattctttatgttagaagttagcatgtaaca |
98 |
Q |
| |
|
||||||| ||||||||||| |||||| ||||| || ||||||||||| |||||||| |||| ||| ||||| |||||||||| |||||| | |||| |
|
|
| T |
19440960 |
ataactttttctattgcatgagcttgttcttgtcttgaaacatatcataatcatat-cataatcatgttcattcattatgttagaggttagcgttgaaca |
19440862 |
T |
|
| Q |
99 |
aacaacattattttggttcattttacggagtgtgtcaggtggagtaaccccgagtacaatccctcacttgaccgatgaaaacctagctaaggtacatcgg |
198 |
Q |
| |
|
||||| ||||| | ||||||||||||| |||| || ||||||||||||||||||||| |||| || |||||||||||||||||| |||||||||||| |
|
|
| T |
19440861 |
aacaatattatctgagttcattttacggggtgtatcgggtggagtaaccccgagtacactcccatacatgaccgatgaaaacctagttaaggtacatcga |
19440762 |
T |
|
| Q |
199 |
actccctcagtgacgtgcgggcctaccttgcggagcgtattctgatcccctggcgagaacctctcgtatcccccttggcgtggataacgaaaagacacga |
298 |
Q |
| |
|
||||||||| || | || ||||| ||||||||||| ||| | |||||||||| |||||||| ||||||||| ||||||||||| | || ||||| || |
|
|
| T |
19440761 |
actccctcaatgtcatgtgggcc-cccttgcggagcttatcgcgttcccctggcgtgaacctcttgtatccccc-tggcgtggatagc-aagagacagga |
19440665 |
T |
|
| Q |
299 |
cacctacatcttacttatggtattgaccatacatgataacttatcttagtactt |
352 |
Q |
| |
|
||||||||||||||||| || ||| ||||||||||||||||| ||| ||||| |
|
|
| T |
19440664 |
cacctacatcttacttaaagtcttgttcatacatgataacttatattattactt |
19440611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 19577110 - 19576771
Alignment:
| Q |
1 |
ataacttgttctattgcataagcttgatcttgactcgaaacatatcagaatcatattcatatccatc--cattctttatgttagaagttagcatgtaaca |
98 |
Q |
| |
|
||||||| ||||||||||| |||||| ||||| || ||||||||||| |||||||| |||| ||| ||||| |||||||||| |||||| | |||| |
|
|
| T |
19577110 |
ataactttttctattgcatgagcttgttcttgtcttgaaacatatcataatcatat-cataatcatgttcattcattatgttagaggttagcgttgaaca |
19577012 |
T |
|
| Q |
99 |
aacaacattattttggttcattttacggagtgtgtcaggtggagtaaccccgagtacaatccctcacttgaccgatgaaaacctagctaaggtacatcgg |
198 |
Q |
| |
|
||||| ||||| | ||||||||||||| |||| || ||||||||||||||||||||| |||| || |||||||||||||||||| |||||||||||| |
|
|
| T |
19577011 |
aacaatattatctgagttcattttacggggtgtatcgggtggagtaaccccgagtacactcccatacatgaccgatgaaaacctagttaaggtacatcga |
19576912 |
T |
|
| Q |
199 |
actccctcagtgacgtgcgggcctaccttgcggagcgtattctgatcccctggcgagaacctctcgtatcccccttggcgtggataacgaaaagacacga |
298 |
Q |
| |
|
||||||||| || | || ||||| ||||||||||| ||| | |||||||||| |||||||| ||||||||| ||||||||||| | || ||||| || |
|
|
| T |
19576911 |
actccctcaatgtcatgtgggcc-cccttgcggagcttatcgcgttcccctggcgtgaacctcttgtatccccc-tggcgtggatagc-aagagacagga |
19576815 |
T |
|
| Q |
299 |
cacctacatcttacttatggtattgaccatacatgataacttat |
342 |
Q |
| |
|
||||||||||||||||| || ||| ||||||||||||||||| |
|
|
| T |
19576814 |
cacctacatcttacttaaagtcttgttcatacatgataacttat |
19576771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 57 - 203
Target Start/End: Complemental strand, 23807971 - 23807823
Alignment:
| Q |
57 |
tcatatccat--ccattctttatgttagaagttagcatgtaacaaacaacattattttggttcattttacggagtgtgtcaggtggagtaaccccgagta |
154 |
Q |
| |
|
|||||||||| |||||| |||||||||| ||||| |||||| ||||||||||| ||||||||||||||||||||| || | |||||||||||||| || |
|
|
| T |
23807971 |
tcatatccatagccattcattatgttagaggttagtgtgtaacgaacaacattatcttggttcattttacggagtgtatcggatggagtaaccccgatta |
23807872 |
T |
|
| Q |
155 |
caatccctcacttgaccgatgaaaacctagctaaggtacatcggactcc |
203 |
Q |
| |
|
|||||||| |||||| ||||||| ||||||||||||||||| |||||| |
|
|
| T |
23807871 |
caatcccttacttgatcgatgaattcctagctaaggtacatcagactcc |
23807823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 118 - 307
Target Start/End: Original strand, 25239280 - 25239468
Alignment:
| Q |
118 |
attttacggagtgtgtcaggtggagtaaccccgagtacaatccctcacttgaccgatgaaaacctagctaaggtacatcggactcc-ctcagtgacgtgc |
216 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||| |||||| ||||||| ||||| |
|
|
| T |
25239280 |
attttacggagtgtatcgggtggagtaaccccgagtataatcccatacttgaccgatgaattcctagctaaggtacatcagactcctctcagtgtcgtgc |
25239379 |
T |
|
| Q |
217 |
gggcctaccttgcggagcgtattctgatcccctggcgagaacctctcgtatcccccttggcgtggataacgaaaagacacgacacctacat |
307 |
Q |
| |
|
|||||||||||| ||||||| | | ||||||| | |||||| |||| |||||||||||||||| | || ||||||||||||||||| |
|
|
| T |
25239380 |
gggcctaccttgtggagcgtgtctcgttcccctgatgtgaaccttatgtat-ccccttggcgtggatagc-aagagacacgacacctacat |
25239468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 118 - 238
Target Start/End: Complemental strand, 25188926 - 25188805
Alignment:
| Q |
118 |
attttacggagtgtgtcaggtggagtaaccccgagtacaatccctcacttgaccgatgaaaacctagctaaggtacatcggactcc-ctcagtgacgtgc |
216 |
Q |
| |
|
||||||| |||||| || |||||||||||| |||||||||||||| |||| |||||||||| |||||||||||||||||||||||| || | || ||||| |
|
|
| T |
25188926 |
attttacagagtgtatcgggtggagtaacctcgagtacaatcccttactttaccgatgaaatcctagctaaggtacatcggactcctcttaatgtcgtgc |
25188827 |
T |
|
| Q |
217 |
gggcctaccttgcggagcgtat |
238 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
25188826 |
gggcctaccttgcggaacgtat |
25188805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 114 - 214
Target Start/End: Complemental strand, 21539558 - 21539458
Alignment:
| Q |
114 |
gttcattttacggagtgtgtcaggtggagtaaccccgagtacaatccctcacttgaccgatgaaaacctagctaaggtacatcggactccctcagtgacg |
213 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
21539558 |
gttcattttacggagagccccaggtggagtaaccccgagtacaatcccatacatgaccgatgaaaacctagctaaggcacatcggactccctcagtgacg |
21539459 |
T |
|
| Q |
214 |
t |
214 |
Q |
| |
|
| |
|
|
| T |
21539458 |
t |
21539458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 177 - 316
Target Start/End: Original strand, 30613627 - 30613763
Alignment:
| Q |
177 |
aaacctagctaaggtacatcggactccctcagtgacgtgcgggcctaccttgcggagcgtattctgatcccctggcgagaacctctcgtatcccccttgg |
276 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||| | | ||||||||| |||||||| | |||||| || |
|
|
| T |
30613627 |
aaacctagctagggtacatcagactccctcagtgtcgtgcgggcctaccttgcggagcgtgtcccatccccctggcgtgaacctcttgcatcccc--tga |
30613724 |
T |
|
| Q |
277 |
cgtggataacgaaaagacacgacacctacatcttacttat |
316 |
Q |
| |
|
||||||||| || |||||||||||||||||||| ||||| |
|
|
| T |
30613725 |
tgtggataac-aagagacacgacacctacatcttgcttat |
30613763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 23811070 - 23811003
Alignment:
| Q |
67 |
ccattctttatgttagaagttagcatgtaacaaacaacattattttggttcattttacggagtgtgtc |
134 |
Q |
| |
|
|||||| |||| ||||| |||||| ||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
23811070 |
ccattcattattttagaggttagcgtgtaacaaataacattatcttggttcattttacggagtgtgtc |
23811003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 178; Significance: 7e-96; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 22827365 - 22827668
Alignment:
| Q |
1 |
ataacttgttctattgcataagcttgatcttgactcgaaacatatcagaatcatattcatatccatccattctttatgttagaagttagcatgtaacaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||| |||||||| ||||| ||| |||||||||||||||||| ||||||||| |
|
|
| T |
22827365 |
ataacttgttctattgcataagcttattcttatctcgaaacatatcgtaatcatat-catattcatt-----tttatgttagaagttagcgtgtaacaaa |
22827458 |
T |
|
| Q |
101 |
caacattattttggttcattttacggagtgtgtcaggtggagtaaccccgagtacaatccctcacttgaccgatgaaaacctagctaaggtacatcggac |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||| || | |||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22827459 |
caacattatcttggttcattttacggagtgcttcgagaggagtaaccccgagtacattcccttacttgaccgatgaaaacctaactaaggtacatcggac |
22827558 |
T |
|
| Q |
201 |
tccctcagtgacgtgcgggcctaccttgcggagcgtattctgatcccctggcgagaacctctcgtatcccccttggcgtggataacgaaaagacacgaca |
300 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
22827559 |
tccctcattgacgtgcgggcctaccttgcggagcgtatctcgttcccctgacgagaacctctcgtatcccccttggcgtggataatggaaagacacgaca |
22827658 |
T |
|
| Q |
301 |
cctacatctt |
310 |
Q |
| |
|
|||||||||| |
|
|
| T |
22827659 |
cctacatctt |
22827668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 68 - 352
Target Start/End: Complemental strand, 16878695 - 16878411
Alignment:
| Q |
68 |
cattctttatgttagaagttagcatgtaacaaacaacattattttggttcattttacggagtgtgtcaggtggagtaaccccgagtacaatccctcactt |
167 |
Q |
| |
|
||||| ||||||||| ||||||| | ||||||||| |||| |||||||||||||||||||| || ||||||||||||||||||||| ||||| |||| |
|
|
| T |
16878695 |
cattcattatgttaggagttagcgttgaacaaacaatgttatcttggttcattttacggagtgcatcgggtggagtaaccccgagtacattcccttactt |
16878596 |
T |
|
| Q |
168 |
gaccgatgaaaacctagctaaggtacatcggactccctcagtgacgtgcgggcctaccttgcggagcgtattctgatcccctggcgagaacctctcgtat |
267 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||| ||||||||| ||| | |||| | ||||||||||||||| |
|
|
| T |
16878595 |
gaccgatgaaaacctagctaaggtacaccggactccctcagtgacatgcaggcctaccttgtggagcgtatcctgtttccctcg-gagaacctctcgtat |
16878497 |
T |
|
| Q |
268 |
cccccttggcgtggataacgaaaagacacgacacctacatcttac-ttatggtattgaccatacatgataacttatcttagtactt |
352 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||| ||| |||||| ||||||||||| |
|
|
| T |
16878496 |
cccccttggcgtggataacggaaagacacgacacctacatcttactttatggtcttgaccatatatgttaacttgtcttagtactt |
16878411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 68 - 352
Target Start/End: Complemental strand, 16990828 - 16990544
Alignment:
| Q |
68 |
cattctttatgttagaagttagcatgtaacaaacaacattattttggttcattttacggagtgtgtcaggtggagtaaccccgagtacaatccctcactt |
167 |
Q |
| |
|
||||| ||||||||| ||||||| | ||||||||| |||| |||||||||||||||||||| || ||||||||||||||||||||| ||||| |||| |
|
|
| T |
16990828 |
cattcattatgttaggagttagcgttgaacaaacaatgttatcttggttcattttacggagtgcatcgggtggagtaaccccgagtacattcccttactt |
16990729 |
T |
|
| Q |
168 |
gaccgatgaaaacctagctaaggtacatcggactccctcagtgacgtgcgggcctaccttgcggagcgtattctgatcccctggcgagaacctctcgtat |
267 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||| ||||||||| ||| | |||| | ||||||||||||||| |
|
|
| T |
16990728 |
gaccgatgaaaacctagctaaggtacaccggactccctcagtgacatgcaggcctaccttgtggagcgtatcctgtttccctcg-gagaacctctcgtat |
16990630 |
T |
|
| Q |
268 |
cccccttggcgtggataacgaaaagacacgacacctacatcttac-ttatggtattgaccatacatgataacttatcttagtactt |
352 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||| ||| |||||| ||||||||||| |
|
|
| T |
16990629 |
cccccttggcgtggataacggaaagacacgacacctacatcttactttatggtcttgaccatatatgttaacttgtcttagtactt |
16990544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 68 - 315
Target Start/End: Complemental strand, 6870 - 6625
Alignment:
| Q |
68 |
cattctttatgttagaagttagcatgtaacaaacaacattattttggttcattttacggagtgtgtcaggtggagtaaccccgagtacaatccctcactt |
167 |
Q |
| |
|
||||| |||||||||| |||||| | ||||||||| ||||| | |||||||||| ||||||| || ||||||||||||| |||||||||||| || | |
|
|
| T |
6870 |
cattcattatgttagaggttagcgttgaacaaacaatattatctgagttcattttatggagtgtatcgggtggagtaaccctgagtacaatcccatacat |
6771 |
T |
|
| Q |
168 |
gaccgatgaaaacctagctaaggtacatcggactccctcagtgacgtgcgggcctaccttgcggagcgtattctgatcccctggcgagaacctctcgtat |
267 |
Q |
| |
|
|||| ||||| ||||||||||| ||||| ||||||||||||| |||||||||| ||||||| ||| ||| | | |||||||||| ||| | || |||| |
|
|
| T |
6770 |
gacctatgaattcctagctaaggcacatcagactccctcagtgtcgtgcgggccccccttgcgaagcttatcccgttcccctggcgtgaatcccttgtat |
6671 |
T |
|
| Q |
268 |
cccccttggcgtggataacgaaaagacacgacacctacatcttactta |
315 |
Q |
| |
|
||||| ||||||||||| | || |||||||||||||||||||| |||| |
|
|
| T |
6670 |
ccccc-tggcgtggatagc-aagagacacgacacctacatcttgctta |
6625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 74 - 315
Target Start/End: Complemental strand, 21338763 - 21338523
Alignment:
| Q |
74 |
ttatgttagaagttagcatgtaacaaacaacattattttggttcattttacggagtgtgtcaggtggagtaaccccgagtacaatccctcacttgaccga |
173 |
Q |
| |
|
|||||||||| |||| | | ||||||||| ||||| | |||||||||| ||||||| || |||||||||||||||||||||||||| || ||||||| |
|
|
| T |
21338763 |
ttatgttagaggttaacgttgaacaaacaatattatctgagttcattttatggagtgtatcgggtggagtaaccccgagtacaatcccatacatgaccga |
21338664 |
T |
|
| Q |
174 |
tgaaaacctagctaaggtacatcggactccctcagtgacgtgcggg-cctaccttgcggagcgtattctgatcccctggcgagaacctctcgtatccccc |
272 |
Q |
| |
|
|||| ||||||||||| |||| | |||||||||||| |||||||| || ||||||||||| ||| | | |||||||| | ||||| || ||||||||| |
|
|
| T |
21338663 |
tgaattcctagctaaggcacattgaactccctcagtgtcgtgcgggcccccccttgcggagcttatcccgttcccctggtgtgaaccccttgtatccccc |
21338564 |
T |
|
| Q |
273 |
ttggcgtggataacgaaaagacacgacacctacatcttactta |
315 |
Q |
| |
|
||||||||||| | || |||||||||||||||||||| |||| |
|
|
| T |
21338563 |
-tggcgtggatagc-aagagacacgacacctacatcttgctta |
21338523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 67 - 237
Target Start/End: Complemental strand, 19240 - 19070
Alignment:
| Q |
67 |
ccattctttatgttagaagttagcatgtaacaaacaacattattttggttcattttacggagtgtgtcaggtggagtaaccccgagtacaatccctcact |
166 |
Q |
| |
|
|||||| |||||||||| |||||| | ||||||||| ||||| | |||||||||||||||||| || ||||| |||||||||||||||||| | || |
|
|
| T |
19240 |
ccattcattatgttagaggttagcgttgaacaaacaatattatctgagttcattttacggagtgtatcgggtggcgtaaccccgagtacaatctcataca |
19141 |
T |
|
| Q |
167 |
tgaccgatgaaaacctagctaaggtacatcggactccctcagtgacgtgcgggcctaccttgcggagcgta |
237 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||| |||||||| |||||||||| ||||||||| ||||| |
|
|
| T |
19140 |
tgaccgatgaattcctagctaaggtacatcagacttcctcagtgtcgtgcgggcccaccttgcggtgcgta |
19070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 119 - 238
Target Start/End: Complemental strand, 29791174 - 29791054
Alignment:
| Q |
119 |
ttttacggagtgtgtcaggtggagtaaccccgagtacaatccctcacttgaccgatgaaaacctagctaaggtacatcggactcc-ctcagtgacgtgcg |
217 |
Q |
| |
|
||||||||| | | || ||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||| |||||| |||| || |||||| |
|
|
| T |
29791174 |
ttttacggaatctatcgggtggagtaaccccgagtacaatcccttactttaccgatgaattcctagctaaggtacatcagactcctctcaatgtcgtgcg |
29791075 |
T |
|
| Q |
218 |
ggcctaccttgcggagcgtat |
238 |
Q |
| |
|
|| |||||||| ||||||||| |
|
|
| T |
29791074 |
ggtctaccttgtggagcgtat |
29791054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 204 - 352
Target Start/End: Complemental strand, 21889002 - 21888856
Alignment:
| Q |
204 |
ctcagtgacgtgcgggcctaccttgcggagcgtattctgatcccctggcgagaacctctcgtatcccccttggcgtggataacgaaaagacacgacacct |
303 |
Q |
| |
|
||||||| |||||||| ||||||| |||||||| | | | |||||| | |||||||| |||||||||| || || |||| | || ||||||||||||| |
|
|
| T |
21889002 |
ctcagtgtcgtgcggggctaccttccggagcgtgtcccgttcccctcacttgaacctcttgtatccccct-ggtgtagatagc-aagagacacgacacct |
21888905 |
T |
|
| Q |
304 |
acatcttacttatggtattgaccatacatgataacttatcttagtactt |
352 |
Q |
| |
|
||||||| | || || |||| |||||||||||| |||||||||||||| |
|
|
| T |
21888904 |
acatctttcctaaagtcttgatcatacatgataagttatcttagtactt |
21888856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 143; Significance: 5e-75; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 9345282 - 9345633
Alignment:
| Q |
1 |
ataacttgttctattgcataagcttgatcttgactcgaaacatatcagaatcatattcatatccatc--cattctttatgttagaagttagcatgtaaca |
98 |
Q |
| |
|
||||||| |||||||||||||||||| |||| || |||||||||| ||||||||||||| |||| ||||| ||||||||| |||||| | ||| |
|
|
| T |
9345282 |
ataacttattctattgcataagcttgttcttatcttgaaacatatcgtaatcatattcataatcatcttcattcaatatgttagaggttagcgttggaca |
9345381 |
T |
|
| Q |
99 |
aacaacattattttggttcattttacggagtgtgtcaggtggagtaaccccgagtacaatccctcacttgaccgatgaaaacctagctaaggtacatcgg |
198 |
Q |
| |
|
|| || ||||| | |||||||||||||||||| || |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
9345382 |
aaaaatattatctaagttcattttacggagtgtatcgggtggagtaaccccgagtacaatcccatacatgaccgatgaaaacctagctaaggtacatcgg |
9345481 |
T |
|
| Q |
199 |
actccctcagtgacgtgcgggcctaccttgcggagcgtattctgatcccctggcgagaacctctcgtatcccccttggcgtggataacgaaaagacacga |
298 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| | | | |||||||| || ||||| ||||||||| |||| |||||| | || |||||||| |
|
|
| T |
9345482 |
actccctcagtgtcgtgcgggcctaccttgcggagcgtgtcccgtccccctggcatgaccctcttgtatccccc-tggcatggatagc-aagagacacga |
9345579 |
T |
|
| Q |
299 |
cacctacatcttacttatggtattgaccatacatgataacttatcttagtactt |
352 |
Q |
| |
|
|||||||||||| |||| || |||| ||||||||||||||||||||||||| |
|
|
| T |
9345580 |
cacctacatcttgattatagtcttgattgtacatgataacttatcttagtactt |
9345633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 156 - 352
Target Start/End: Original strand, 26228320 - 26228516
Alignment:
| Q |
156 |
aatccctcacttgaccgatgaaaacctagctaaggtacatcggactccctcagtgacgtgcgggcctaccttgcggagcgtattctgatcccctggcgag |
255 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| | | |||||| | ||| |
|
|
| T |
26228320 |
aatcccttacttgaccgatgaaaacctagctaaggtacatcggactccctcggtgacgtgcgggcctaccatgcggagcgtatcccgttccccttg-gag |
26228418 |
T |
|
| Q |
256 |
aacctctcgtatcccccttggcgtggataacgaaaagacacgacacctacatcttac-ttatggtattgaccatacatgataacttatcttagtactt |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||| || |||||| ||||||||||| |
|
|
| T |
26228419 |
aacctctcgtatcccccttggcgtggataactgaaagacacgacacctacatcttactttatggtcttgaccatatatattaacttgtcttagtactt |
26228516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 68 - 309
Target Start/End: Original strand, 16262010 - 16262248
Alignment:
| Q |
68 |
cattctttatgttagaagttagcatgtaacaaacaacattattttggttcattttacggagtgtgtcaggtggagtaaccccgagtacaatccctcactt |
167 |
Q |
| |
|
||||| |||||||||| ||||| | |||||||| ||||| ||| ||||||||||| | || || ||||||||||||||||||||||||| || | |
|
|
| T |
16262010 |
cattcattatgttagaggttagtgttgaacaaacataattatcttgattcattttacgaaatgcatcgactggagtaaccccgagtacaatcccttacat |
16262109 |
T |
|
| Q |
168 |
gaccgatgaaaacctagctaaggtacatcggactccctcagtgacgtgcgggcctaccttgcggagcgtattctgatcccctggcgagaacctctcgtat |
267 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| | | | ||||||||| |||||||| |||| |
|
|
| T |
16262110 |
gaccgatgaaa-cctagctaaggtacatcggactccctcagtgtcgtgcgggcctaccttgcagagcgtgtcccgtccccctggcgtgaacctcttgtat |
16262208 |
T |
|
| Q |
268 |
cccccttggcgtggataacgaaaagacacgacacctacatct |
309 |
Q |
| |
|
|||||||||||||||| | || |||||||||| |||||||| |
|
|
| T |
16262209 |
-ccccttggcgtggatagc-aagagacacgacatctacatct |
16262248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 300
Target Start/End: Original strand, 21082705 - 21082791
Alignment:
| Q |
213 |
gtgcgggcctaccttgcggagcgtattctgatcccctggcgagaacctctcgtatcccccttggcgtggataacgaaaagacacgaca |
300 |
Q |
| |
|
|||||||||||||||||||||||||| | | ||||| || ||| |||||||||||| | ||| |||||||||| |||||||||||| |
|
|
| T |
21082705 |
gtgcgggcctaccttgcggagcgtatcccgtccccctaacgtgaaactctcgtatccctc-tggagtggataacggaaagacacgaca |
21082791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 14733323 - 14733262
Alignment:
| Q |
212 |
cgtgcgggcctaccttgcggagcgtattctgatcccctggcgagaacctctcgtatccccct |
273 |
Q |
| |
|
||||||||||||| ||||||||||||| || ||||| || ||||||||||||||||||| |
|
|
| T |
14733323 |
cgtgcgggcctactttgcggagcgtatcttgtccccctaacgtgaacctctcgtatccccct |
14733262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 156 - 353
Target Start/End: Original strand, 22805791 - 22805989
Alignment:
| Q |
156 |
aatccctcacttgaccgatgaaaacctagctaaggtacatcggactccctcagtgacgtgcgggcctaccttgcggagcgtattctgatcccctggcgag |
255 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||| | ||| |
|
|
| T |
22805791 |
aatcccttacttgaccgatgaaaacctagctaaagtacatcggactccctcagtgacatgcgggcctaccttgcggagcgtatcacgttccccttgtgag |
22805890 |
T |
|
| Q |
256 |
aacctctcgtatcccccttggcgtggataacgaaaagacacgacacctacatcttac-ttatggtattgaccatacatgataacttatcttagtactta |
353 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||| ||||||||| || |||||| |||||||||||| |
|
|
| T |
22805891 |
aacctctcgtatcccccttggcgttgataacggaaagacacgacacctacatcttactttatggtcttgaccatatgtgttaacttgtcttagtactta |
22805989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 156 - 411
Target Start/End: Original strand, 19243688 - 19243936
Alignment:
| Q |
156 |
aatccctcacttgaccgatgaaaacctagctaaggtacatcggactccctcagtgacgtgcgggcctaccttgcggagcgtattctgatcccctggcgag |
255 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||| ||| |||||||||||||||||||| ||||||| |||||||||||| | | |||||| | ||| |
|
|
| T |
19243688 |
aatcccttacttgaccgacgaaaacctagctaaggtatatcagactccctcagtgacgtgcgagcctaccatgcggagcgtatcccgttccccttgtgag |
19243787 |
T |
|
| Q |
256 |
aacctctcgtatcccccttggcgtggataacgaaaagacacgacacctacatcttac-ttatggtattgaccatacatgataacttatcttagtacttag |
354 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||| ||||||||| ||||| |||| ||||||| |
|
|
| T |
19243788 |
aacctctcgtatcccccttggcgtggatagcataaagacacgacacctacatcttactttatggtcttgaccatatatgat-acttgtcttagt------ |
19243880 |
T |
|
| Q |
355 |
cacttgcttacttagtcattcttactcatggtgaagagattattcttatcaattcac |
411 |
Q |
| |
|
|||||||| ||||||||||||| ||||| ||||| ||| ||| ||||||||||| |
|
|
| T |
19243881 |
-acttgcttgcttagtcattcttgctcatagtgaaaagactataactatcaattcac |
19243936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 156 - 411
Target Start/End: Original strand, 21950542 - 21950790
Alignment:
| Q |
156 |
aatccctcacttgaccgatgaaaacctagctaaggtacatcggactccctcagtgacgtgcgggcctaccttgcggagcgtattctgatcccctggcgag |
255 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||| ||| ||||||||||| ||||||||| | | |||||| | ||| |
|
|
| T |
21950542 |
aatcccttacttgaccgatgaaaacctagctaaggtacatcggacttcctcaacgacttgcaggcctaccttgtggagcgtatcccgttccccttgtgag |
21950641 |
T |
|
| Q |
256 |
aacctctcgtatcccccttggcgtggataacgaaaagacacgacacctacatcttac-ttatggtattgaccatacatgataacttatcttagtacttag |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||| ||||| |||| ||||||| |
|
|
| T |
21950642 |
aacctctcgtatcccccttggcgtggataacggaaagacacgacacctacatcttactttatggtcttgaccatgtatgat-acttgtcttagt------ |
21950734 |
T |
|
| Q |
355 |
cacttgcttacttagtcattcttactcatggtgaagagattattcttatcaattcac |
411 |
Q |
| |
|
|||||||| ||||||| ||||||||||| ||||| ||| ||| ||||||||||| |
|
|
| T |
21950735 |
-acttgcttgcttagtcgttcttactcatagtgaatagactataactatcaattcac |
21950790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 68 - 315
Target Start/End: Original strand, 22800918 - 22801165
Alignment:
| Q |
68 |
cattctttatgttagaagttagcatgtaacaaacaacattattttggttcattttacggagtgtgtcaggtggagtaaccccgagtacaatccctcactt |
167 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||| || ||||||||||||||||| || |||||||||||||||||||||||||| |||| |
|
|
| T |
22800918 |
cattcattatgttagaagttagcgtgtaacaaacaacattatcttcattcattttacggagtgtatcgggtggagtaaccccgagtacaatcccatactt |
22801017 |
T |
|
| Q |
168 |
gaccgatgaaaacctagctaaggtacatcggactccctcagtgacgtgcgggcctaccttgcggagcgtattctgatcccctggcgagaacctctcg-ta |
266 |
Q |
| |
|
|| ||||||||||||| |||||| ||| ||||||||||||| ||||||||||||||||| ||||||||| | | ||||||||| |||||||| | | |
|
|
| T |
22801018 |
tgccaatgaaaacctagcgaaggtatatcagactccctcagtgtcgtgcgggcctaccttgtggagcgtatcccgtccccctggcgtgaacctcttgaaa |
22801117 |
T |
|
| Q |
267 |
tcccccttggcgtggataacgaaaagacacgacacctacatcttactta |
315 |
Q |
| |
|
||||||||||| ||||| | || | |||||||||||||||||| |||| |
|
|
| T |
22801118 |
tcccccttggcatggatcgc-aagaaacacgacacctacatcttgctta |
22801165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 164 - 239
Target Start/End: Original strand, 3575746 - 3575821
Alignment:
| Q |
164 |
acttgaccgatgaaaacctagctaaggtacatcggactccctcagtgacgtgcgggcctaccttgcggagcgtatt |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3575746 |
acttgaccgatgaaaacctagctaaggtacatcggactccctcagtgacgtgcgggcctaccttgcagagcgtatt |
3575821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 411
Target Start/End: Original strand, 22801264 - 22801316
Alignment:
| Q |
359 |
tgcttacttagtcattcttactcatggtgaagagattattcttatcaattcac |
411 |
Q |
| |
|
||||||| || |||||||| ||||||||||||| |||| ||||||||||||| |
|
|
| T |
22801264 |
tgcttacataatcattcttgttcatggtgaagagcttatacttatcaattcac |
22801316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 9e-40; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 69 - 238
Target Start/End: Original strand, 37984590 - 37984761
Alignment:
| Q |
69 |
attctttatgttagaa-gttagcatgtaacaaacaacattattttggttcattttacggagtgtgtcaggtggagtaaccccgagtacaatccctcactt |
167 |
Q |
| |
|
|||| ||||||||||| |||||| |||||||||||||||||| | ||| |||| || |||||| || |||| |||||||||||||||||||| | |||| |
|
|
| T |
37984590 |
attcattatgttagaaagttagcgtgtaacaaacaacattatctgagttgatttgacagagtgtatcgggtgcagtaaccccgagtacaatcctttactt |
37984689 |
T |
|
| Q |
168 |
gaccgatgaaaacctagctaaggtacatcggactcc-ctcagtgacgtgcgggcctaccttgcggagcgtat |
238 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| || | || ||||||||||||||||||||||||||| |
|
|
| T |
37984690 |
gaccgatgaattcctagctaaggtacatcggactcctcttaatgccgtgcgggcctaccttgcggagcgtat |
37984761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 4 - 203
Target Start/End: Original strand, 29253155 - 29253351
Alignment:
| Q |
4 |
acttgttctattgcataagcttgatcttgactcgaaacatatcagaatcatattcatatccatccattctttatgttagaagttagcatgtaacaaacaa |
103 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||| ||| |||||||||||||| ||| | ||||||||||| ||||| ||||||||| || |
|
|
| T |
29253155 |
acttgttctattgcataaacttgctcttgactcgaaacaaatcgtaatcatattcatattcattc-----ttatgttagaaattagcgtgtaacaaaaaa |
29253249 |
T |
|
| Q |
104 |
cattattttggttcattttacggagtgtgtcag-gtggagtaaccccg--agtacaatccctcacttgaccgatgaaaacctagctaaggtacatcggac |
200 |
Q |
| |
|
|||||| ||||||||||||||||| | | | |||||||||||||| ||| ||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
29253250 |
cattatcttggttcattttacggattaatcccgagtggagtaaccccggaagtt-aatcccttacttgactgatgaaaacctagctaaggtacatcggac |
29253348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 236
Target Start/End: Complemental strand, 21231361 - 21231260
Alignment:
| Q |
136 |
ggtggagtaaccccgagtacaatccctcacttgaccgatgaaaacctagctaaggtacatcggactcc-ctcagtgacgtgcgggcctaccttgcggagc |
234 |
Q |
| |
|
|||||||||||||||| |||||||| || | |||||| || ||||||||| ||||||| ||||| ||||||| ||||||||||||||||| ||||| |
|
|
| T |
21231361 |
ggtggagtaaccccgattacaatcctaaacataaccgattaattcctagctaaagtacatcatactcctctcagtgtcgtgcgggcctaccttgtggagc |
21231262 |
T |
|
| Q |
235 |
gt |
236 |
Q |
| |
|
|| |
|
|
| T |
21231261 |
gt |
21231260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 68 - 127
Target Start/End: Original strand, 22752537 - 22752597
Alignment:
| Q |
68 |
cattctttatgttaga-agttagcatgtaacaaacaacattattttggttcattttacgga |
127 |
Q |
| |
|
||||| |||||||||| ||||||| |||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
22752537 |
cattcattatgttagagagttagcgtgtaacaaacaacattatcttggttcgttttacgga |
22752597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0290 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0290
Description:
Target: scaffold0290; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 74 - 203
Target Start/End: Complemental strand, 5636 - 5507
Alignment:
| Q |
74 |
ttatgttagaagttagcatgtaacaaacaacattattttggttcattttacggagtgtgtcaggtggagtaaccccgagtacaatccctcacttgaccga |
173 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||| ||||||| ||||||||||||| || ||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
5636 |
ttatgttagaggttaatgtgtaacaaacaacattatcttggttcgttttacggagtgtatcgggtggagtaaccccgagtacaatcccttactttaccga |
5537 |
T |
|
| Q |
174 |
tgaaaacctagctaaggtacatcggactcc |
203 |
Q |
| |
|
|||| |||||||||||||||| ||||||| |
|
|
| T |
5536 |
tgaattcctagctaaggtacattggactcc |
5507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 75 - 284
Target Start/End: Original strand, 22188 - 22396
Alignment:
| Q |
75 |
tatgttagaa-gttagcatgtaacaaacaacattattttggttcattttacggagtgtgtcaggtggagtaaccccgagtacaatccctcacttgaccga |
173 |
Q |
| |
|
|||||||||| |||||| ||||||| |||| |||| | ||| |||||||||||||| || |||||||||||||||||||||||||| || ||||||| |
|
|
| T |
22188 |
tatgttagaaagttagcgtgtaacatacaa--ttatctgagttgattttacggagtgtatcgggtggagtaaccccgagtacaatcccatacatgaccga |
22285 |
T |
|
| Q |
174 |
tgaaaacctagctaaggtacatcggactcc-ctcagtgacgtgcgggcctaccttgcggagcgtattctgatcccctggcgagaacctctcgtatccccc |
272 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||| ||| ||||| ||||||||||| ||||||| | | | ||||||| | |||||||| ||||||||| |
|
|
| T |
22286 |
tgaattcctagctaaggtacatcggactcctctcggtgccgtgcaggcctaccttgtggagcgtgtcccgttcccctgaggtgaacctcttgtatccccc |
22385 |
T |
|
| Q |
273 |
ttggcgtggata |
284 |
Q |
| |
|
||||||||||| |
|
|
| T |
22386 |
-tggcgtggata |
22396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 67 - 236
Target Start/End: Original strand, 12405 - 12574
Alignment:
| Q |
67 |
ccattctttatgttagaa-gttagcatgtaacaaacaacattattttggttcattttacggagtgtgtcaggtggagtaaccccgagtacaatccctcac |
165 |
Q |
| |
|
|||||| ||||||| ||| |||||| ||||||| |||| |||| | ||| |||||| |||||| || |||||||||||||||||||||||| | || |
|
|
| T |
12405 |
ccattcattatgttggaaagttagcgtgtaacatacaa--ttatctgagtttattttatggagtgcatcgggtggagtaaccccgagtacaatctcatac |
12502 |
T |
|
| Q |
166 |
ttgaccgatgaaaacctagctaaggtacatcggactcc-ctcagtgacgtgcgggcctaccttgcggagcgt |
236 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||| || | | |||||| ||||||||||||||||||| |
|
|
| T |
12503 |
atgaccgatgaattcctagctaaggtacatcaatctcctctgaattacgtgcaggcctaccttgcggagcgt |
12574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 67 - 236
Target Start/End: Complemental strand, 24114 - 23945
Alignment:
| Q |
67 |
ccattctttatgttagaa-gttagcatgtaacaaacaacattattttggttcattttacggagtgtgtcaggtggagtaaccccgagtacaatccctcac |
165 |
Q |
| |
|
|||||| ||||||| ||| |||||| ||||||| |||| |||| | ||| |||||| |||||| || |||||||||||||||||||||||| | || |
|
|
| T |
24114 |
ccattcattatgttggaaagttagcgtgtaacatacaa--ttatctgagtttattttatggagtgcatcgggtggagtaaccccgagtacaatctcatac |
24017 |
T |
|
| Q |
166 |
ttgaccgatgaaaacctagctaaggtacatcggactcc-ctcagtgacgtgcgggcctaccttgcggagcgt |
236 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||| || | | |||||| ||||||||||||||||||| |
|
|
| T |
24016 |
atgaccgatgaattcctagctaaggtacatcaatctcctctgaattacgtgcaggcctaccttgcggagcgt |
23945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0627
Description:
Target: scaffold0627; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 146
Target Start/End: Complemental strand, 1343 - 1198
Alignment:
| Q |
2 |
taacttgttctattgcataagcttgatcttgactcgaaacatatcagaatcatattcatatcca--tccattctttatgttagaagttagcatgtaacaa |
99 |
Q |
| |
|
||||||||||||||| ||||||||| |||| || ||||||||||| ||||||||||||| || | ||||| ||||||||| |||||| | ||||| |
|
|
| T |
1343 |
taacttgttctattggataagcttgttcttttcttgaaacatatcataatcatattcataatcatgttcattcattatgttagcggttagcgttgaacaa |
1244 |
T |
|
| Q |
100 |
acaacattattttggttcattttacggagtgtgtcaggtggagtaac |
146 |
Q |
| |
|
| | ||||| | |||||||||||||||||| || ||||||||||| |
|
|
| T |
1243 |
aaactattatctgagttcattttacggagtgtatc-ggtggagtaac |
1198 |
T |
|
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