View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7051_low_6 (Length: 403)
Name: NF7051_low_6
Description: NF7051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7051_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 219 - 394
Target Start/End: Complemental strand, 29023091 - 29022912
Alignment:
| Q |
219 |
gtgtaattaagtcaaattaatatgatatccaaccacatacgatgacaaagagggaccataccctgtatggttgattcgtgcttgtcctagtcatcatgtc |
318 |
Q |
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| T |
29023091 |
gtgtaattaagtcaaattaatatgatatccaaccacatatgatgacaaagagggaccatatcctgtatggttaattcgtgcttgtcctagtcatcatgtc |
29022992 |
T |
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| Q |
319 |
atttatgtttccttacgttaatg----nnnnnnnngaacatgccaaaatgagatataacattagcaaatgtgtttcatct |
394 |
Q |
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| T |
29022991 |
atttatgttttcttacgtgaatgtttttttttttttaacatgccaaaatgagatataacattaacaaatgtgttccatct |
29022912 |
T |
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Target: chr3; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 29023257 - 29023080
Alignment:
| Q |
19 |
ttttctgttaaaatagtgtgctacaaattgaataataaaatccgtaaatatgtatatttctttttgtagc--nnnnnnnnggataaagaaaagatcaagg |
116 |
Q |
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| T |
29023257 |
ttttctgttgaaatagtgtgctacaaattgaataataaaatccgcaaatatgtatatttctttttgtagcaaaaataaaaggataaagaaaagatcaagg |
29023158 |
T |
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| Q |
117 |
cattacacgagggattacatatgt-nnnnnnntgaccactttaatgagattattaaaatagaggaattaaaagtgtaattaagt |
199 |
Q |
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| T |
29023157 |
cattacacgagggattacatatgtaaaaaaaatgaccac------gagattattaaaatagaggaattaaaagtgtaattaagt |
29023080 |
T |
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