View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7052_high_1 (Length: 903)
Name: NF7052_high_1
Description: NF7052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7052_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 753; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 753; E-Value: 0
Query Start/End: Original strand, 19 - 893
Target Start/End: Original strand, 31449830 - 31450695
Alignment:
| Q |
19 |
agatagagggtaatatatatggataggctcatgtgtaagggtattcagacttgtgtaaggaattggttaggagaattattctctggtaagaaccctagag |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31449830 |
agatagagggtaatatatatggataggctcatgtgtaagggtattcagacttgtataaggaattggttaggagaattattctctggtaagaaccctagag |
31449929 |
T |
|
| Q |
119 |
ctctgctaggaatttttgactttggtttaacttttcatttgccgttccttcgttgtagagcctctgagctcatctttaccattcaataatatacaaattt |
218 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31449930 |
ctctgctaggaattttttactttggtttaacttttcatttgccgttccttcgttgtagagcctctgagctcatctttaccattcaataatatacaaattt |
31450029 |
T |
|
| Q |
219 |
accttatttaaatttgtaattgaagacatcaccgcactagtgcactactgtcatacatttaaattttacaaggaccccaccctacataagtgcattattg |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
31450030 |
accttatttaaatttgtaattgaagacatcaccgcactagtgcactactgtcatacatttaaattttactaggaccccaccctacataagtgcattattg |
31450129 |
T |
|
| Q |
319 |
tgatgcttgatttatttgcaataagtattttttgtttatgttttcgcaggcctttgggctctgactagactggaaactacatttcannnnnnnaaaaact |
418 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
31450130 |
tgatgcttgatttatttgcaataagta-tttttgtttatgttttcgcaggcctttgggctctgactagactggaaactacatttcattttttaaaaaact |
31450228 |
T |
|
| Q |
419 |
tataatgcaagtagatgtagctcttgata-ttgttaataaaatctgag-aacttttcactaaatgaatattgtatttactttaataatgcagtttgtacg |
516 |
Q |
| |
|
|||||||||||| ||||| |||||||||| |||||||||||||||| | |||||||||||||||||||| ||| ||||||||||||||||| |
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|
| T |
31450229 |
tataatgcaagtggatgtggctcttgatatttgttaataaaatctgtgaaacttttcactaaatgaata----------tttcataatgcagtttgtacg |
31450318 |
T |
|
| Q |
517 |
tgcatacatgatggttaatgaattgcagaaaatgaatttagaacctacgacagccatgtacaatgcaatactggcaggatatttccacgaggtatcattg |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31450319 |
tgcatacatgatggttaatgaattgcagaaaatgaatttagaacctacgacagccatgtacaatgcaatactggcaggatatttccacgaggtatcattg |
31450418 |
T |
|
| Q |
617 |
ttggattttgtagacgcctattcttgctcagattttcaactatttctcaaacttgatgataatgctttgctttaacttcaaatataatgtgacaagtttt |
716 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
31450419 |
ttggattttgtagacgcctattcttgctcagattttcaactatttctcaaactagatgataatgctttgctttaacttcgaatataatgtgacaagtttt |
31450518 |
T |
|
| Q |
717 |
gacatttccaacattaagttcaaataacttctcgacttgcatgtctagactctagagacttcctaaagtagattgcatagacattttttctctcataagc |
816 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31450519 |
gacatttccaacatcaagttcaaataacttctcgacttgcatgtctagactctagagacttcctaaagtagattgcatagacattttttctctcataagc |
31450618 |
T |
|
| Q |
817 |
atgatatttatatagatggattaataaatagtacatacaggtatgaataaaccaagcttctgtcttaacaccaaact |
893 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31450619 |
atgatatttgtatagatggattaataaatagtacatacaggtatgaataaaccaagcttctgtcttaacaccaaact |
31450695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 471 - 683
Target Start/End: Original strand, 31463518 - 31463732
Alignment:
| Q |
471 |
ttcactaaatgaatattgtatttactttaataatgcagtttgtacgtgcatacatgatggttaatgaattgcagaaaatgaatttagaacctacgacagc |
570 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||| || || ||| ||||||||||||| |
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|
| T |
31463518 |
ttcactaaatgaatattgtatttactttcataatgcagtttgaacgtgcatacaagatggttaatgaattgcatgaattgggtttcaaacctacgacagc |
31463617 |
T |
|
| Q |
571 |
catgtacaatgcaatactggcaggatatttccacgaggtatcattgttggattttgtagacgccta--ttcttgctcagattttcaactatttctcaaac |
668 |
Q |
| |
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|||||||||||| ||| ||||||||||||| | |||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||| |
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|
| T |
31463618 |
catgtacaatgccataatggcaggatattttcgtgaggtatcattgttggattttgtagaaatctatgttctcgctcagattttcaactatttctcaaac |
31463717 |
T |
|
| Q |
669 |
ttgatgataatgctt |
683 |
Q |
| |
|
| ||| ||||||||| |
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|
| T |
31463718 |
tcgataataatgctt |
31463732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 719 - 893
Target Start/End: Original strand, 31463735 - 31463912
Alignment:
| Q |
719 |
catttccaacattaagttcaaataacttctcgacttgcatgtctagactctagagacttcctaaagtagattgcatagacatttttt---ctctcataag |
815 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| || ||| |||||||||| ||||||||| |||||| | |
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|
| T |
31463735 |
catttccaacattaagttcaaataacctcttgacttgcatgtctagactctagagactttctgaagcagattgcatatacattttttttcttctcattaa |
31463834 |
T |
|
| Q |
816 |
catgatatttatatagatggattaataaatagtacatacaggtatgaataaaccaagcttctgtcttaacaccaaact |
893 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||| | || ||||||||||||||||||| ||||||||||| |
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|
| T |
31463835 |
catgatatttacatagatggattaataaatagtacatgcagttgtggataaaccaagcttctgtctaaacaccaaact |
31463912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 487 - 622
Target Start/End: Complemental strand, 55805224 - 55805089
Alignment:
| Q |
487 |
tgtatttactttaataatgcagtttgtacgtgcatacatgatggttaatgaattgcagaaaatgaatttagaacctacgacagccatgtacaatgcaata |
586 |
Q |
| |
|
|||||||||||| || |||||||||| | |||| |||| ||||||||||||||||||||||| | |||| || | ||| ||||||| ||||| || |
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|
| T |
55805224 |
tgtatttactttcattatgcagtttgaatgtgcgtacaagatggttaatgaattgcagaaaaagtatttcaaatacaaaacaaccatgtataatgccatt |
55805125 |
T |
|
| Q |
587 |
ctggcaggatatttccacgaggtatcattgttggat |
622 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |
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|
| T |
55805124 |
atggcaggatattttttcgaggtatcattgttggat |
55805089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 255 - 402
Target Start/End: Original strand, 31462262 - 31462415
Alignment:
| Q |
255 |
ctagtgcactactgtcatacatttaaattttacaaggaccccaccctacataagtgcattattgtgatgcttgatttatttgcaataagtattttttgtt |
354 |
Q |
| |
|
|||||||| || ||| || ||||||||||||| || || ||||| ||||||| |||||||||| |||||||||||| | |||||| |||||||||| || |
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|
| T |
31462262 |
ctagtgcattattgtaatgcatttaaattttataataactccaccttacataaatgcattattgcgatgcttgatttttatgcaattagtattttttttt |
31462361 |
T |
|
| Q |
355 |
t------atgttttcgcaggcctttgggctctgactagactggaaactacattt |
402 |
Q |
| |
|
| ||||||| | |||||||||| ||||||||| |||||||| ||||| |
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|
| T |
31462362 |
tctcttagtgttttcatatgcctttgggcactgactagattggaaactgcattt |
31462415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 227
Target Start/End: Original strand, 48625478 - 48625572
Alignment:
| Q |
133 |
tttgactttggtttaacttttcatttgccgttccttcgttgtagagcctctgagctcatctttaccattcaataatatacaaatttaccttattt |
227 |
Q |
| |
|
||||||| |||| || | |||||||||| |||||| |||||||||||||| ||| |||||||||||| ||||||||| | |||| |||||||| |
|
|
| T |
48625478 |
tttgactctggtctatcctttcatttgctattcctttgttgtagagcctctaggctaatctttaccattaaataatataaagatttgccttattt |
48625572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 4e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 487 - 623
Target Start/End: Original strand, 29710440 - 29710576
Alignment:
| Q |
487 |
tgtatttactttaataatgcagtttgtacgtgcatacatgatggttaatgaattgcagaaaatgaatttagaacctacgacagccatgtacaatgcaata |
586 |
Q |
| |
|
|||||||||||| || |||||||||| | |||| |||| ||||||||||||||||||||||| | |||| || | ||| ||||||| ||||| || |
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|
| T |
29710440 |
tgtatttactttcattatgcagtttgaatgtgcgtacaagatggttaatgaattgcagaaaaagtatttcaaatacaaaacaaccatgtataatgccatt |
29710539 |
T |
|
| Q |
587 |
ctggcaggatatttccacgaggtatcattgttggatt |
623 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
|
|
| T |
29710540 |
atggcaggatattttttcgaggtatcattgttggatt |
29710576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 29975200 - 29975163
Alignment:
| Q |
171 |
ttgtagagcctctgagctcatctttaccattcaataat |
208 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
29975200 |
ttgtagagcctctgagctcatctttctcattcaataat |
29975163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 4e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 135 - 223
Target Start/End: Complemental strand, 14453089 - 14453001
Alignment:
| Q |
135 |
tgactttggtttaacttttcatttgccgttccttcgttgtagagcctctgagctcatctttaccattcaataatatacaaatttacctt |
223 |
Q |
| |
|
||||| ||||||| | |||||||| | || ||| ||||||||||||||||| ||||||||||||||||||||| |||| ||||||||| |
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|
| T |
14453089 |
tgactctggtttatcctttcatttcctatttcttagttgtagagcctctgaggtcatctttaccattcaataatctacagatttacctt |
14453001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 135 - 223
Target Start/End: Complemental strand, 14452937 - 14452849
Alignment:
| Q |
135 |
tgactttggtttaacttttcatttgccgttccttcgttgtagagcctctgagctcatctttaccattcaataatatacaaatttacctt |
223 |
Q |
| |
|
||||| ||||||| | |||||||| | || ||| ||||||||||||| ||||||||||||||||||||||||| ||| ||||||||| |
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|
| T |
14452937 |
tgactctggtttatcctttcatttcctatttcttggttgtagagcctccgagctcatctttaccattcaataatcaacagatttacctt |
14452849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 487 - 548
Target Start/End: Original strand, 15169403 - 15169464
Alignment:
| Q |
487 |
tgtatttactttaataatgcagtttgtacgtgcatacatgatggttaatgaattgcagaaaa |
548 |
Q |
| |
|
||||||||||||||| |||||||||| | |||| |||| ||||||||||||||||||||||| |
|
|
| T |
15169403 |
tgtatttactttaattatgcagtttgaatgtgcgtacaagatggttaatgaattgcagaaaa |
15169464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 487 - 543
Target Start/End: Original strand, 15165136 - 15165192
Alignment:
| Q |
487 |
tgtatttactttaataatgcagtttgtacgtgcatacatgatggttaatgaattgca |
543 |
Q |
| |
|
|||||||||||| || |||||||||| | |||||||| |||||||||||||||||| |
|
|
| T |
15165136 |
tgtatttactttcattatgcagtttgaatctgcatacaagatggttaatgaattgca |
15165192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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