View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7053_high_12 (Length: 251)
Name: NF7053_high_12
Description: NF7053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7053_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 118 - 237
Target Start/End: Original strand, 6610181 - 6610300
Alignment:
| Q |
118 |
gttaaacaattgctctaagtggcaagatgatgcagtatatgagaatattaaaaacagtatagtgcatagtttggttttatgattttgtgtggcagttaag |
217 |
Q |
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| T |
6610181 |
gttaaacaattgctctaagtggcaagatgatgcagtatatgagaatattaaaaacagtatagtgcatagtttggttttatgattttgtgtggcagttaag |
6610280 |
T |
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| Q |
218 |
aattttctttaatcttgatg |
237 |
Q |
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| T |
6610281 |
aattttctttaatcttgatg |
6610300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 6610027 - 6610142
Alignment:
| Q |
1 |
tgtgtgtgacaataagctgtaagctgaaataatttatagaaagnnnnnnnnnnnnnnncacttgttagttgttacaatagtttttatt--gagtggcaga |
98 |
Q |
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| T |
6610027 |
tgtgtgtgacaataagctgtaagctgaaataatttatagaaagaaaaaaaaaa-----cacttgttagttgttacaatagtttttattgagagtggcaga |
6610121 |
T |
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| Q |
99 |
gccactataattgtcctttgt |
119 |
Q |
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| T |
6610122 |
gccactataattgtcctttgt |
6610142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 6602531 - 6602588
Alignment:
| Q |
59 |
cacttgttagttgttacaatagtttttattgagtggcagagccactataattgtcctt |
116 |
Q |
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| T |
6602531 |
cacttgttaattgttaacatagtttttatagagtggcagagccactatgattgtcctt |
6602588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 6602481 - 6602519
Alignment:
| Q |
3 |
tgtgtgacaataagctgtaagctgaaataatttatagaa |
41 |
Q |
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| T |
6602481 |
tgtgtgacaataagttgtaagctgaaacaatttatagaa |
6602519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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