View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7053_high_13 (Length: 243)
Name: NF7053_high_13
Description: NF7053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7053_high_13 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 6609783 - 6610008
Alignment:
| Q |
18 |
agcagcaatccttgagtcattagctatagctgacaagatattatttttaacaattctgttcaggtttggacaagttctaatgtagaaattgtaatatagt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
6609783 |
agcagcaatccttgagtcattagctatagctgacaagatattatttttaacaattctgttcaggtttggacaagttctaatgtagaagttgtaatagagt |
6609882 |
T |
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| Q |
118 |
tgagagcacacaagtggagtaagaaacacaagacaaaacatgaaaacaaaaacatgtttgttagagacacactccatgagttgaaactatgatgacaaca |
217 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6609883 |
tgagagcacacatttggagtaagaaacacaagacaaaacatgaaaacaaaaacatgtttgttagagacacactccatgagttgaaactatgatgacaaca |
6609982 |
T |
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| Q |
218 |
aagggaagttaaaatttgttgagttt |
243 |
Q |
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|||||||||||||||||||||||||| |
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| T |
6609983 |
aagggaagttaaaatttgttgagttt |
6610008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 6602268 - 6602465
Alignment:
| Q |
18 |
agcagcaatccttgagtcattagctatagctgacaagatattatttttaacaattctgttcaggtttggacaagttctaatgtagaaattgtaatatagt |
117 |
Q |
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|||||||||||| || |||||||||||||||||||||||||| | |||||||||| ||||||| |||||||||||||| | |||||||||||||||||| |
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| T |
6602268 |
agcagcaatcctagaatcattagctatagctgacaagatattgtctttaacaattttgttcagatttggacaagttctgttatagaaattgtaatatagt |
6602367 |
T |
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| Q |
118 |
tgagagcacacaagtggagtaagaaacacaagacaaaacatgaaaacaaaaacatgtttgttagagacacactccatgagttgaaactatgatgacaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
6602368 |
tgagagcacacaagtggagtaagaaacacaagacaaaacatgaaaataaaaacatgtttgttagagacacactccatgagctgaaactatgttgacaa |
6602465 |
T |
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